FASTA searches a protein or DNA sequence data bank
 version 3.4t11 Apr 17, 2002
Please cite:
 W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

 ../query/mKIAA1401.ptfa, 800 aa
 vs ./tmplib.26680 library

1768217 residues in  2168 sequences
  Expectation_n fit: rho(ln(x))= 6.2506+/-0.00452; mu= 8.9470+/- 0.301
 mean_var=128.6136+/-30.103, 0's: 0 Z-trim: 6  B-trim: 0 in 0/36
 Lambda= 0.1131

FASTA (3.45 Mar 2002) function [optimized, BL50 matrix (15:-5)] ktup: 2
 join: 38, opt: 26, open/ext: -10/-2, width:  16
The best scores are:                                       opt bits E(2168)
mKIAA0187  ( 1287 res)   mpm09170                  (1287)  377   74 1.6e-13


>>mKIAA0187  ( 1287 res)   mpm09170                       (1287 aa)
 initn: 376 init1: 143 opt: 377  Z-score: 335.1  bits: 73.6 E(): 1.6e-13
Smith-Waterman score: 390;  24.900% identity (27.778% ungapped) in 502 aa overlap (315-777:631-1119)

          290       300       310       320       330       340    
mKIAA1 LLHIVGHGDFQMNQIDAPVDPFPLNPRVIKSQKKPNMAMEVCVTDAAPDMEEDLKVLMKA
                                     : .::  : :  : : . :.:  ::   . 
mKIAA0 DESEDSELSAEEEDSDHREVRGKLAHPQRDSGQKP--ASESLV-DETSDIESLLKEEEEY
              610       620       630         640        650       

          350       360       370       380         390       400  
mKIAA1 DPDHQESLQTEAIPDPMEGEQTWPTEEELDEADDLLKQRSRV--VKKVPKGTSSYQAEWI
         :.. :..:        :   :  .     :. .:.:.. .  ..:.  :: . . :  
mKIAA0 KEDNSSSVETS-------GALKWKEDLSRKAAEAFLRQQQAAPNLRKLIYGTVTEDNE--
       660              670       680       690       700          

            410                    420       430       440         
mKIAA1 LDEGDESDGEGGEY-------------DDIQHEGFMEEESQDGSGEEEEEECETMTLGES
        ..:: ..  :: .             :...   :  :  .: . ::  .  .   .  .
mKIAA0 DEDGDPAEELGGLFHVSQPDRGCKHKADSLDCSRFPVEAPHDWDLEEVMNSIRDCFVTGK
      710       720       730       740       750       760        

     450       460                 470              480       490  
mKIAA1 VRDDLYDEKVDAEDEERM----------LEKYK-------QERLEEMFPDEMDTPRDVAA
        .::    :. ::.:: .          ..: :       ..  ::   .: :  .. .:
mKIAA0 WEDDKDAAKILAEEEELYGDFEDLETGDVHKGKPGPDTQSEDIEEEEVKEETDPSEEESA
      770       780       790       800       810       820        

             500       510       520        530       540          
mKIAA1 RIR-FQKYRGLKSFRTSPWDPKENLPRDYARI-FQFQNFVNTRKRIFKEIEEK-EAEGAE
       : . ..: : :: .  . .:  :.   :  .  .: :  .:  .   .: : . . :: .
mKIAA0 RKKHLDKKRKLKELFDAEYDEGESTYFDDLKGEMQRQAQLNQAEFEDQEDETRVQYEGFR
      830       840       850       860       870       880        

     550       560       570       580       590       600         
mKIAA1 VGWYVTLHVSDVPVSVVEYFRQGAPLIAFSLLPYEQKMSVLNMVVSRNPGNTEPVKAKEE
        : :: ... ..:   :. :    :.:  .:   :  .. ..: ....    . .:... 
mKIAA0 PGMYVRIEIENIPCEFVQNFDPHYPIILGGLGNSEGTVGYVQMRIKKHRWYKKILKSRDP
      890       900       910       920       930       940        

     610       620       630       640       650       660         
mKIAA1 LIFHCGFRRFRASPLFSQHTAADKHKFQRFLTADAAFVVTVFAPITFPPASVLLFKQRRN
       .::  :.:::.. ::.  .    .... ..        .: ..::: : .. .:  :  .
mKIAA0 IIFSVGWRRFQTIPLYYIEDHNGRQRLLKYTPQHMHCGATFWGPIT-PQGTGFLAIQSVS
      950       960       970       980       990       1000       

     670          680       690       700       710       720      
mKIAA1 GMHS---LIATGHLFSVDPDRMVIKRVVLSGHPFKIFTKMAVVRYMFFNREDVMWFKPVE
       :.     . ::: ....: .  ..:.. :.: ::::: . . .. :: .  .:  :. . 
mKIAA0 GVMPEFRIAATGVVLDLDKSIKIVKKLKLTGFPFKIFKNTSFIKGMFNSALEVAKFEGAV
      1010      1020      1030      1040      1050      1060       

        730       740        750       760       770       780     
mKIAA1 LRTKWGRRGHIKEPLGT-HGHMKCSFDGKLKSQDTVLMNLYKRVFPKWTYDPYVPEPVPW
       .::  : ::.::. : . .: .. ::. ::  .: :.:  .  :     :.:        
mKIAA0 IRTVSGIRGQIKKALRSPEGAFRASFEDKLLMSDIVFMRTWYPVSIPAFYNPVTSLLKPV
      1070      1080      1090      1100      1110      1120       

         790       800                                             
mKIAA1 VKSDISSTVSEVDME                                             
                                                                   
mKIAA0 GEKDTWSGMRTTHQLRLAHGIKLKANKDSLYKPILRQKKHFNSLHIPKALQKALPFKNKP
      1130      1140      1150      1160      1170      1180       




800 residues in 1 query   sequences
1768217 residues in 2168 library sequences
 Scomplib [34t11]
 start: Mon Mar 27 10:43:47 2006 done: Mon Mar 27 10:43:48 2006
 Scan time:  0.900 Display time:  0.050

Function used was FASTA [version 3.4t11 Apr 17, 2002]