FASTA searches a protein or DNA sequence data bank version 3.4t11 Apr 17, 2002 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 ../query/mKIAA0143.ptfa, 832 aa vs ./tmplib.26680 library 1768185 residues in 2168 sequences Expectation_n fit: rho(ln(x))= 4.4964+/-0.00418; mu= 18.4322+/- 0.280 mean_var=83.9132+/-18.680, 0's: 0 Z-trim: 2 B-trim: 0 in 0/36 Lambda= 0.1400 FASTA (3.45 Mar 2002) function [optimized, BL50 matrix (15:-5)] ktup: 2 join: 38, opt: 26, open/ext: -10/-2, width: 16 The best scores are: opt bits E(2168) mKIAA0953 ( 657 res) mbg06276 ( 657) 1847 383 4.7e-107 >>mKIAA0953 ( 657 res) mbg06276 (657 aa) initn: 1686 init1: 726 opt: 1847 Z-score: 2014.3 bits: 383.4 E(): 4.7e-107 Smith-Waterman score: 2507; 56.392% identity (60.611% ungapped) in 704 aa overlap (131-832:1-657) 110 120 130 140 150 160 mKIAA0 CHSQSIKPFVESFLHMVAKLLESGEPKLQVLGTNSFVKFANIEEDTPSYHRRYDFFVSRF ::::::::::::::::::::: :::::::: mKIAA0 LGTNSFVKFANIEEDTPSYHRSYDFFVSRF 10 20 30 170 180 190 200 210 220 mKIAA0 SAMCHSCHSDPEIRTEIRIAGIRGIQGVVRKTVNDELRATIWEPQHMDKIVPSLLFNMQK : :::: :.: ::.:.::..::.:.::::::::::::.:.::.::::::::::::::.:. mKIAA0 SEMCHSSHDDLEIKTKIRMSGIKGLQGVVRKTVNDELQANIWDPQHMDKIVPSLLFNLQH 40 50 60 70 80 90 230 240 250 260 270 mKIAA0 IEEVDSRLGPPSSPSAADKE-ENPAVLAESCFRELLGRATFGNMNNAVRPVFAHLDHHKL .::..:: :: .: .:: :::: ::: :.:::::::.:::..::..::. :::.:.: mKIAA0 VEEAESR--SPSPLQAPEKEKENPAELAERCLRELLGRAAFGNIKNAIKPVLIHLDNHSL 100 110 120 130 140 280 290 300 310 320 330 mKIAA0 WDPNEFAVHCFKIIMYSIQAQYSHHVIQEILGHLDARRKDSPRVRAGIIQVLLEAVAIAA :.:. ::..:::::::::: :.:: :::..:.:::: ... :::::..:: ::. ::: mKIAA0 WEPKVFATRCFKIIMYSIQPQHSHLVIQQLLSHLDANSRSAATVRAGIVEVLSEAAIIAA 150 160 170 180 190 200 340 350 360 370 380 390 mKIAA0 KGSIGPTVLEVFNTLLKHLRLSVELEANDSQKGSVGSVTVSSKDNDEKIVQNAVIQTIGF ::.::::::.:::::..::::.. . : :.:. . :...: . :.:::.::: mKIAA0 TGSVGPTVLEMFNTLLRQLRLSIDYALTGSYDGAVSLGSKIIKEHEECMFQEAVIKTIGS 210 220 230 240 250 260 400 410 420 430 440 450 mKIAA0 FGSNLPDYQRSEIMMFIMGKVPVFGTSTHTLDISQLGDLGTRRIQIMLLRSLLMVTSGYK :.:.:: :::::...:::.:::. . : .. .. :. .: :::::.:::.:..:.. mKIAA0 FASTLPTYQRSEVILFIMSKVPL-PSVHHPVETGRTGENRNRLTQIMLLKSLLQVSTGFQ 270 280 290 300 310 320 460 470 480 490 500 510 mKIAA0 AKTIVTALPGSFLDPLLSPSLMEDYELRQLVLEVMHNLMDRHDNRAKLRGIRIIPDVADL .....:::..::: ::: .:::: :.: .:::.. ...::: :: :. : . :.. : mKIAA0 CNNMMSALPSNFLDRLLSTALMEDAEIRLFVLEILISFIDRHGNRHKFSTISTLGDISVL 330 340 350 360 370 380 520 530 540 550 560 570 mKIAA0 KIKREKICRQDTSFMKKNGQQLYRHIYLGCKEEDNVQKNYELLYTSLALITIELANEEVV :.: .: :::: ::::..:::::::::.:::: :.::.:: :: ::::.::::::::: mKIAA0 KLKVDKCSRQDTVFMKKHSQQLYRHIYLSCKEETNIQKHYEALYGLLALISIELANEEVV 390 400 410 420 430 440 580 590 600 610 620 630 mKIAA0 IDLIRLAIALQDSAIINEDNLSMFHRCGIMALVAAYLNFVSQMIAVPAFCQHVSKVIETR .:::::..:.: ::::: mKIAA0 VDLIRLVLAVQ--------------------------------------------VIETR 450 460 640 650 660 670 680 690 mKIAA0 TMEAPYFLPEHIFRDKCMLPKSLEKHDKNLYFLTNKIAESLGGSGYSVERLTVPYVPQVT ::::.::: .: .: : ..:. .. : .::.: ::::::. .:: .::.::.: mKIAA0 KKEAPYMLPEDVFVEKPRLSQNLDGVVIEFLFRQSKISEVLGGSGYNSDRLCLPYIPQLT 470 480 490 500 510 520 700 710 720 730 740 750 mKIAA0 DEDRLSRRKSIVDTVSIQVDILSNSVPSDDVVSNTEEITFEALKKAI-DTNGMEEQEKEK ::::::.:::: .:.:.::.. : . : . .::::.:.::::: :. ..::::.:. mKIAA0 DEDRLSKRKSIGETISLQVEVESRNSPEKEERVPAEEITYETLKKAIVDSVAVEEQERER 530 540 550 560 570 580 760 770 780 790 800 810 mKIAA0 RRLVIEKFQKAPFEEIAAQCESKANLLHDRLAQILELTIRPPPSPSGTLTVTSGHTQYQS .: :.:::::::::::::.: ..:.::...: ::.:.:::::::::::.... :. : .: mKIAA0 QRQVVEKFQKAPFEEIAAHCGARASLLQSKLNQIFEITIRPPPSPSGTISAAYGQPQNHS 590 600 610 620 630 640 820 830 mKIAA0 VPVYEMKFPDLCVY .::::::::::::: mKIAA0 IPVYEMKFPDLCVY 650 832 residues in 1 query sequences 1768185 residues in 2168 library sequences Scomplib [34t11] start: Mon Mar 27 10:13:05 2006 done: Mon Mar 27 10:13:06 2006 Scan time: 0.860 Display time: 0.060 Function used was FASTA [version 3.4t11 Apr 17, 2002]