FASTA searches a protein or DNA sequence data bank
 version 3.4t11 Apr 17, 2002
Please cite:
 W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

 ../query/mKIAA0794.ptfa, 367 aa
 vs ./tmplib.26680 library

1768650 residues in  2168 sequences
  Expectation_n fit: rho(ln(x))= 6.1996+/-0.00516; mu= 7.5559+/- 0.343
 mean_var=131.9130+/-31.036, 0's: 0 Z-trim: 3  B-trim: 0 in 0/36
 Lambda= 0.1117

FASTA (3.45 Mar 2002) function [optimized, BL50 matrix (15:-5)] ktup: 2
 join: 37, opt: 25, open/ext: -10/-2, width:  16
The best scores are:                                       opt bits E(2168)
mKIAA4154  ( 702 res)   mpj02503                   ( 702)  205   44   3e-05


>>mKIAA4154  ( 702 res)   mpj02503                        (702 aa)
 initn: 200 init1: 167 opt: 205  Z-score: 186.5  bits: 44.1 E(): 3e-05
Smith-Waterman score: 205;  28.902% identity (31.250% ungapped) in 173 aa overlap (199-366:537-701)

      170       180       190       200       210       220        
mKIAA0 EAAIRASLQETHFDSAQAKQDSRSDEESESELFSGSEEFISVCGSDEEEEVENLAKS---
                                     :.::....  ..   ::.:  ::. .    
mKIAA4 MGKRSSNEVLNVIQGNTTVDELMMRLMAAMEIFSAQQQE-DIKDEDEREARENVKREQDE
        510       520       530       540        550       560     

           230       240       250       260       270       280   
mKIAA0 --RKSPHKDLGHRKEENRRPLTEPPARTEPGTATNHQGLPSMDSEVLEMSPEKSDGIVEG
         : : . : ..: : ..: ..:   : :     ...     . :....: :..      
mKIAA4 AYRLSLEADRAKR-EAHEREMAEQ-FRLEQIRKEQEE-----EREAIRLSLEQALPPEPK
         570        580        590       600            610        

           290       300       310       320       330       340   
mKIAA0 IDVNGPKAQLMLRYPDGKREQITLPEQAKLLALVKHVQSKGYPNERFELLTNFPRRKLSH
        .   : ..: .: :.:.  .  .  . ::  .   : :::.: ..:.::..:::: ...
mKIAA4 EENAEPVSKLRIRTPSGEFLERRFLASNKLQIVFDFVASKGFPWDEFKLLSTFPRRDVTQ
      620       630       640       650       660       670        

           350       360       
mKIAA0 LDYDITLQEAGLCPQETVFVQERN
       :: . .: :..: ::::.:.: ..
mKIAA4 LDPNKSLLEVNLFPQETLFLQAKE
      680       690       700  




367 residues in 1 query   sequences
1768650 residues in 2168 library sequences
 Scomplib [34t11]
 start: Mon Mar 27 10:28:48 2006 done: Mon Mar 27 10:28:49 2006
 Scan time:  0.610 Display time:  0.010

Function used was FASTA [version 3.4t11 Apr 17, 2002]