FASTA searches a protein or DNA sequence data bank
 version 3.4t11 Apr 17, 2002
Please cite:
 W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

 ../query/mKIAA1986.ptfa, 767 aa
 vs ./tmplib.26680 library

1768250 residues in  2168 sequences
  Expectation_n fit: rho(ln(x))= 14.0312+/-0.0101; mu= -25.5827+/- 0.671
 mean_var=573.0684+/-141.356, 0's: 0 Z-trim: 2  B-trim: 0 in 0/36
 Lambda= 0.0536

FASTA (3.45 Mar 2002) function [optimized, BL50 matrix (15:-5)] ktup: 2
 join: 38, opt: 26, open/ext: -10/-2, width:  16
The best scores are:                                       opt bits E(2168)
mFLJ00348  ( 1089 res)   mth00001                  (1089)  357   42 0.00029


>>mFLJ00348  ( 1089 res)   mth00001                       (1089 aa)
 initn: 654 init1: 196 opt: 357  Z-score: 168.8  bits: 42.5 E(): 0.00029
Smith-Waterman score: 372;  28.010% identity (29.076% ungapped) in 382 aa overlap (114-485:572-949)

            90       100       110       120       130       140   
mKIAA1 AEAESPTGTSPPADGRLKAAAKRVTFPSDEDIVSGAVEPKDPWRHAQNVTVDEVISAYRQ
                                     ....: ..: :    :. ..:   .:  :.
mFLJ00 SGLLSPRVNTLLAGSLLSQGEHQSYRDQVAEVLQGFLHP-DAAVCARAINVLYCLSELRH
             550       560       570       580        590       600

              150         160       170       180       190        
mKIAA1 ---ACQKLNCRQIPKL--LRQLQEFTDLEQRINCLDLKGEKLDYKTCEALEEVFKRLQFK
          ::.  .  .   :  . . .. : :   ..  :. . . :.. : . ..:.. :  .
mFLJ00 TELACSVEEAMRSGTLAGMTSPSHRTALAYLLQMSDICSPEADFSLCLS-QHVLQSLLPQ
              610       620       630       640        650         

      200           210       220       230        240       250   
mKIAA1 VVDLEQTNLD----EDGASALFDMIEYYESATHLNISFNKH-IGTRGWQAAAHMMRKTSC
       ..  ..  ::    .: .  :.  .   ..    .::. .. ::..: .: :. .  .  
mFLJ00 LLYCQSLRLDNNQFQDPVMELLGSVLSGKDCRIRKISLAENQIGNKGAKALARSLLVNRS
     660       670       680       690       700       710         

           260       270       280       290       300       310   
mKIAA1 LQYLDARNTPLLDHSAPFVARALRIRSSLAVLHLENASLSGRPLMLLATALKMNMNLREL
       :  :: :.. .   .:  .: ::.:  .:. : :..  ..   .: .: ::  :...  :
mFLJ00 LITLDLRSNSIGPPGAKALADALKINRTLTSLSLQSNVIKDDGVMCVAEALVSNQTISML
     720       730       740       750       760       770         

           320       330       340       350       360       370   
mKIAA1 YLADNKLNGLQDSAQLGNLLKFNCSLQILDLRNNHVLDSGLAYICEGLKEQRKGLVTLVL
        :  : : ::  . :... :: : ::. : . .: . : :   . :.:: ..  : .: :
mFLJ00 QLQKN-LIGLIGAQQMADALKQNRSLKALMFSSNTIGDRGAIALAEALKVNQI-LENLDL
     780        790       800       810       820       830        

           380       390       400       410       420       430   
mKIAA1 WNNQLTHTGMAFLGMALPHTQSLETLNLGHNPIGNEGVRNLKNGLISNRSVLRLGLASTK
        .:...  :.. :  ::  .:.: .::: .: :. ::.. : ..:  : .. .: :... 
mFLJ00 QSNSISDMGVTVLMRALCSNQTLSSLNLRENSISPEGAQALTQALCRNNTLKHLDLTANL
       840       850       860       870       880       890       

           440       450       460       470       480       490   
mKIAA1 LTCEGAVAVAEFIAESPRLLRLDLRENEIKTGGLMALSLALKVNHSLLRLDLDREPKKEP
       :  .:: :.:  ..:.  : .: :. : :..:.  ::. ::..:..:  :::.       
mFLJ00 LHDRGAQAIAVAVGENHSLTHLHLQWNFIQAGAARALGQALQLNRTLTTLDLQENAIGDE
       900       910       920       930       940       950       

           500       510       520       530       540       550   
mKIAA1 VKSFIETQKALLAEIQNGCKRNFVLVREREEKQQLQLSASMPEITITAPQPLEESGELPA
                                                                   
mFLJ00 GASSVAGALKVNTTLIALYLQVASIGSQGAQALGEALTVNRTLEILDLRGNDVGAAGAKA
       960       970       980       990      1000      1010       




767 residues in 1 query   sequences
1768250 residues in 2168 library sequences
 Scomplib [34t11]
 start: Mon Mar 27 10:57:05 2006 done: Mon Mar 27 10:57:06 2006
 Scan time:  0.880 Display time:  0.030

Function used was FASTA [version 3.4t11 Apr 17, 2002]