FASTA searches a protein or DNA sequence data bank
 version 3.4t11 Apr 17, 2002
Please cite:
 W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

 ../query/mKIAA1303.ptfa, 373 aa
 vs ./tmplib.26680 library

1768644 residues in  2168 sequences
  Expectation_n fit: rho(ln(x))= 3.4514+/-0.00428; mu= 21.2587+/- 0.288
 mean_var=81.9965+/-18.633, 0's: 0 Z-trim: 5  B-trim: 0 in 0/36
 Lambda= 0.1416

FASTA (3.45 Mar 2002) function [optimized, BL50 matrix (15:-5)] ktup: 2
 join: 37, opt: 25, open/ext: -10/-2, width:  16
The best scores are:                                       opt bits E(2168)
mFLJ00045  ( 612 res)   mfj40199                   ( 612)  127   36  0.0088


>>mFLJ00045  ( 612 res)   mfj40199                        (612 aa)
 initn:  76 init1:  76 opt: 127  Z-score: 142.3  bits: 35.7 E(): 0.0088
Smith-Waterman score: 167;  22.826% identity (26.141% ungapped) in 276 aa overlap (108-368:313-568)

        80        90       100       110       120       130       
mKIAA1 VADKDSICFWDWEKGEKLDYFHNGNPRYTRVTAMEYLNGQDCSLLLTATDDGAIRVWKNF
                                     :.:...  :.   :: :.  :  ...:. :
mFLJ00 QDIMDTHPASGKDVRVPTTASYVFDAHDGEVNAVQFSPGS--RLLATGGMDRRVKLWEAF
            290       300       310       320         330       340

        140       150       160       170       180       190      
mKIAA1 AD-LEKNPEMVTAWQGLSDMLPTTRGAGMVVDWEQETGLLMSSGDVRIVRIWDTDRETKV
       .:  : .  .  .  :....   . ::           :: .:.:    ::: .: . ..
mFLJ00 GDKCEFKGSLSGSNAGITSIEFDSAGAY----------LLAASNDF-ASRIWTVD-DYRL
              350       360                 370        380         

        200       210       220       230            240       250 
mKIAA1 QDIPTGADSCVTSLSCDSHRSLIVAGLGDGSIRVYDRRMALSE-----CRVMTYREHTAW
       .   :: .. : : .     . ::.:  : .....: :  . :     : .:..   .. 
mFLJ00 RHTLTGHSGKVLSAKFLLDNARIVSGSHDRTLKLWDLRSKVCEEMQSLCVLMVFGFLSG-
      390       400       410       420       430       440        

             260              270       280       290       300    
mKIAA1 VVKAYLQKHP-------EGHIVSVSVNGDVRFFDPRMPESVNVMQIVKGLTALDIHPQ-A
        .:. .           :  ..:   .  .::.: :    :  :...  .::::..:. .
mFLJ00 -IKTVFAGSSCNDIVCTEQCVMSGHFDKKIRFWDIRSESVVREMELLGKITALDLNPERT
        450       460       470       480       490       500      

           310       320       330       340        350       360  
mKIAA1 NLIACGSMNQFTAIYNGNGELINNIKYYDGFMGQRVGA-ISCLAFHPHWPHLAVGSNDYY
       .:..: : ...  . .   . ...     ::   . :.  . ..: :   ..:.:: .  
mFLJ00 ELLSC-SRDDLLKVIDLRTNAVKQTFSAPGF---KCGSDWTRVVFSPDGSYVAAGSAEGS
        510        520       530          540       550       560  

            370                                          
mKIAA1 ISVYSVEKRVR                                       
       . :.::                                            
mFLJ00 LYVWSVLTGKVEKVLSKQHSSSINAVAWAPSGLHVVSVDKGSRAVLWAQP
            570       580       590       600       610  




373 residues in 1 query   sequences
1768644 residues in 2168 library sequences
 Scomplib [34t11]
 start: Mon Mar 27 10:40:20 2006 done: Mon Mar 27 10:40:21 2006
 Scan time:  0.590 Display time:  0.020

Function used was FASTA [version 3.4t11 Apr 17, 2002]