FASTA searches a protein or DNA sequence data bank version 3.4t11 Apr 17, 2002 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 ../query/mKIAA0190.ptfa, 818 aa vs ./tmplib.26680 library 1768199 residues in 2168 sequences Expectation_n fit: rho(ln(x))= 7.3272+/-0.00561; mu= 5.4992+/- 0.370 mean_var=167.4077+/-41.284, 0's: 0 Z-trim: 8 B-trim: 143 in 1/35 Lambda= 0.0991 FASTA (3.45 Mar 2002) function [optimized, BL50 matrix (15:-5)] ktup: 2 join: 38, opt: 26, open/ext: -10/-2, width: 16 The best scores are: opt bits E(2168) mKIAA0055 ( 1108 res) mbh03469 (1108) 275 52 5e-07 mKIAA0529 ( 955 res) mbh01226 ( 955) 226 45 5.7e-05 mKIAA0891 ( 1362 res) mfj56010 (1362) 227 45 6.7e-05 >>mKIAA0055 ( 1108 res) mbh03469 (1108 aa) initn: 232 init1: 87 opt: 275 Z-score: 218.6 bits: 51.8 E(): 5e-07 Smith-Waterman score: 401; 24.737% identity (29.889% ungapped) in 760 aa overlap (86-812:435-1096) 60 70 80 90 100 110 mKIAA0 ELPPYSGTLCSIQAEDELPDGQEHQRIEFGVDEVIEPSEGLPPTPSYSISSTLNPQAPEF ::.. .:: :: .. :.: . :. . mKIAA0 QPALAGPGAAPRAEASPIIQPAPATKSVPQVDRTKKPSVKLPE--DHRIKSENTDQSGR- 410 420 430 440 450 460 120 130 140 150 160 170 mKIAA0 ILGCTTSKKI---PEAVEKDETYSSIDQYPASALALESNSNAEAETLENDSGAGGLGQRE .:. ..: . : .. :: . : : .:: .:.:.. : : :. .. mKIAA0 VLSDRSTKPVFPSPTTMLTDEEKARIHQ--ETALLMEKNKQ-EKELW--DKQQKEQKEKL 470 480 490 500 510 180 190 200 210 mKIAA0 RKKKKKRPPGYYS------------YLKDGGEDSASPATLV-------NGHATSVGTSGE :.....: : . ::: : . : : . .: ..::. . mKIAA0 RREEQERKAGKTQDADERDSTENQHKAKDGQEKKDSKQTKTEDRELSADGAQEATGTQRQ 520 530 540 550 560 570 220 230 240 250 260 mKIAA0 AVEDAEFMDVLPPVMPRTC---DSPQNPVDFISGPVPDSPFPRTLGGDARTAGLCEG-CH . . : :. :: . : .. . :.: .: : : . .: :. : .. . mKIAA0 SKSEHEASDAKVPVEGKRCPTSEAQKRPAD-VS---PASVSGELNAGKAQREPLTRARSE 580 590 600 610 620 630 270 280 290 300 310 320 mKIAA0 EADFEQPCLPADSLLRTAGTQPYVGTDTTENFAVANGKILESPGEDTAANGAELHTDEGA : : :: : . .: .:: : . .:: .: .... : : mKIAA0 EMGRIVPGLP---LGWAKFLDPITGT-----F-----RYYHSP-----TNTVHMYPPEMA 640 650 660 670 330 340 350 360 370 380 mKIAA0 DLDPAKPESQSPPAESALSASGAIPISQPAKSWASLFHDSKPSASSPMAYVETKCSPPVP :.. ..::.... : .:.: : :.:. .. . : : : : mKIAA0 ---PSSAPPSTPPTHKVKPQVPAERDREPSKLKRSY---SSPDITQALQE-EEKRRPAV- 680 690 700 710 720 390 400 410 420 430 440 mKIAA0 SPLASEKQMEVKEGLVPVSEDPVAIKIAELLETVTLIHKPVSLQPRGLINKGNWCYINAT .:.... : : : .: .. : ..... . . :: : :: ::.:. mKIAA0 TPMVNR---ENKPPCYPKAE--ISRLSASQIRNLNPVFGGSGPALTGLRNLGNTCYMNSI 730 740 750 760 770 780 450 460 470 480 490 500 mKIAA0 LQALVACPPMYHLMKFIPLYSKVQRPCTSTPMIDSFVRLMNEFTNMPVPPKPRQALGDKI :: : : :: .. . : . . .. .. .:: . .:: mKIAA0 LQCLCNAP---HLADYFN-RNCYQDDINRSNLLGHKGEVAEEFGII------MKALWTGQ 790 800 810 820 830 510 520 530 540 550 560 mKIAA0 VRDIRPGAAFEPTYIYRLLTVIKSSLSEKGR-QEDAEEYLGFILNGLHEEMLSLKKLLSP : : : :. .:. : . . : :.:..: : :...::::. :.: . mKIAA0 YRYISP-KDFK-------VTIGKINDQFAGSSQQDSQELLLFLMDGLHED---LNK--AD 840 850 860 870 570 580 590 600 610 620 mKIAA0 THEKHSVSNGPRSDLIEDEELEDTGKGSEDEWEQVGPKNKTSITRQADFVQTPITGIFGG ....:. : .:.:.: ...: :. :.: .. .. :...: : mKIAA0 NRKRHKEEN--------NEHLDDL-QAAEHAWQ----KHK-------QLNESIIVALFQG 880 890 900 910 630 640 650 660 670 680 mKIAA0 HIRSVVYQQSSKE-SATLQLFFTLQLDIQSDKIRTVQDALESLVARESVQG----YTTKT ...:.: . .. : :.. :. :.: . : . :.:: :. . .:.. : .. mKIAA0 QFKSTVQCLTCRRRSRTFEAFMYLSLPLASTSKCTLQDCLRLFSKEEKLTDNNRFYCSHC 920 930 940 950 960 970 690 700 710 720 730 740 mKIAA0 KQEVEVSRRVTLEKLPPVLVLHLKRFVYEKTGGCQKLVKNIDYPVD-LEISRELLSPGIK . . . ... . ::::::..::::: :. ::: ..:.:.. :..:. ...: : mKIAA0 RARRDSLKKIEIWKLPPVLLVHLKRFSYDGRWK-QKLQTSVDFPLENLDLSQYVIGP--K 980 990 1000 1010 1020 1030 750 760 770 780 790 800 mKIAA0 NKNFKCQRTYRLFAVVYHHGNSATGGHYTTDVFQIGLNGWLRIDDQTVKVINQYQVVKPP :. . : ::.: :.:. :::::. . . . :...::. :. :. . :. mKIAA0 NS----LKKYNLFSVSNHYGG-LDGGHYTAYCKNAARQRWFKFDDHEVSDIS-VSSVRSS 1040 1050 1060 1070 1080 810 mKIAA0 ADRTAYLLYYRRVDLL : ::.:.: mKIAA0 A---AYILFYTSLGPRITDVAT 1090 1100 >>mKIAA0529 ( 955 res) mbh01226 (955 aa) initn: 266 init1: 107 opt: 226 Z-score: 181.6 bits: 44.8 E(): 5.7e-05 Smith-Waterman score: 252; 32.075% identity (35.915% ungapped) in 159 aa overlap (663-816:762-908) 640 650 660 670 680 mKIAA0 VVYQQSSKESATLQLFFTLQLDIQSDKIRTVQDALESLVARESVQG----YTTKTKQEVE ..: .: ....:.. . : . :.. . mKIAA0 KKRYFDENAAEDFEKHESVEYKPPKRPFVKLKDCIELFTTKEKLGAEDPWYCPNCKEHQQ 740 750 760 770 780 790 690 700 710 720 730 740 mKIAA0 VSRRVTLEKLPPVLVLHLKRFVYEKTGGCQKLVKNIDYPV-DLEISRELLSPGIKNKNFK ..... : .::::::.::::: : . .:: .:.:. ::..:. :..:. mKIAA0 ATKKLDLWSLPPVLVVHLKRFSYSRYMR-DKLDTLVDFPISDLDMSEFLINPNAG----P 800 810 820 830 840 750 760 770 780 790 800 mKIAA0 CQRTYRLFAVVYHHGNSATGGHYTTDVFQIGLNGWLRIDDQTVKVINQYQVVKPPADRTA :. : :.:: :.:. . :::::. . . . : .::..:.. .. :.:. ..: mKIAA0 CR--YNLIAVSNHYGGMG-GGHYTAFAKNKDDGKWYYFDDSSVSTASEDQIVS----KAA 850 860 870 880 890 810 mKIAA0 YLLYYRRVDLL :.:.:.: : mKIAA0 YVLFYQRQDTFSGTGFFPLDRETKGASAATGIPLESDEDSNDNDNDLENENCMHTN 900 910 920 930 940 950 >>mKIAA0891 ( 1362 res) mfj56010 (1362 aa) initn: 211 init1: 106 opt: 227 Z-score: 180.3 bits: 45.0 E(): 6.7e-05 Smith-Waterman score: 227; 34.028% identity (38.889% ungapped) in 144 aa overlap (679-814:1161-1294) 650 660 670 680 690 700 mKIAA0 FTLQLDIQSDKIRTVQDALESLVARESVQGYTTKTKQEVEVSRRVTLEKLPPVLVLHLKR : . ::. :.:... : .:: ::...::: mKIAA0 GEAARAGHFTLDQCLNLFTRPEVLAPEEAWYCPQCKQHREASKQLLLWRLPNVLIVQLKR 1140 1150 1160 1170 1180 1190 710 720 730 740 750 760 mKIAA0 FVYEKTGGCQKLVKNIDYPV-DLEISRELLSPGIKNKNFKCQRTYRLFAVVYHHGNSATG : ... .:. ...:: .:..:. . : :.... .: :.::. :.:. : mKIAA0 FSFRSFIWRDKINDLVEFPVRNLDLSKFCI--GQKEEQLP---SYDLYAVINHYGG-MIG 1200 1210 1220 1230 1240 770 780 790 800 810 mKIAA0 GHYTTDVF-------QIGLNGWLRIDDQTVKVINQYQVVKPPADRTAYLLYYRRVDLL ::::. . : . :: .::.:: .... ::: : ::.:.::: mKIAA0 GHYTACARLPNDRSSQRSDVGWRLFDDSTVTTVDESQVVT----RYAYVLFYRRRNSPVE 1250 1260 1270 1280 1290 1300 mKIAA0 RPPRASHSEHHPDLGPAAEAAASQGLGPGQAPEVAPTRTAPERFAPPVDRPAPTYSNMEE 1310 1320 1330 1340 1350 1360 818 residues in 1 query sequences 1768199 residues in 2168 library sequences Scomplib [34t11] start: Mon Mar 27 10:14:10 2006 done: Mon Mar 27 10:14:11 2006 Scan time: 0.910 Display time: 0.130 Function used was FASTA [version 3.4t11 Apr 17, 2002]