# /usr/local/bin/fasta34_t -T 4 -b50 -d10 -E0.01 -H -O./tmp/mph02290.fasta.nr -Q ../query/mKIAA4068.ptfa /cdna4/rodent/rouge_util/new.rouge/nfasta/nr 2 FASTA searches a protein or DNA sequence data bank version 34.26.5 April 26, 2007 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 mKIAA4068, 129 aa vs /cdna4/rodent/rouge_util/new.rouge/nfasta/nr library 2727779818 residues in 7921681 sequences statistics sampled from 60000 to 7920975 sequences Expectation_n fit: rho(ln(x))= 4.5908+/-0.000181; mu= 8.5020+/- 0.010 mean_var=59.0081+/-11.654, 0's: 33 Z-trim: 39 B-trim: 2140 in 1/65 Lambda= 0.166962 FASTA (3.5 Sept 2006) function [optimized, BL50 matrix (15:-5)] ktup: 2 join: 36, opt: 24, open/ext: -10/-2, width: 16 The best scores are: opt bits E(7921681) gi|26335013|dbj|BAC31207.1| unnamed protein produc ( 128) 871 217.2 5.3e-55 gi|74199646|dbj|BAE41493.1| unnamed protein produc ( 239) 701 176.5 1.8e-42 gi|26354430|dbj|BAC40843.1| unnamed protein produc ( 471) 701 176.7 3e-42 gi|93099911|gb|AAI15712.1| Sh3pxd2b protein [Mus m ( 647) 701 176.8 3.9e-42 gi|93099936|gb|AAI15765.1| Sh3pxd2b protein [Mus m ( 647) 701 176.8 3.9e-42 gi|223461423|gb|AAI41307.1| SH3 and PX domains 2B ( 908) 701 176.9 5e-42 gi|162416033|sp|A2AAY5.1|SPD2B_MOUSE RecName: Full ( 908) 701 176.9 5e-42 gi|74140592|dbj|BAE42425.1| unnamed protein produc ( 910) 701 176.9 5e-42 gi|211925505|dbj|BAG81976.1| FAD49 [Mus musculus] ( 910) 701 176.9 5e-42 gi|119581836|gb|EAW61432.1| SH3 and PX domains 2B, ( 430) 697 175.7 5.5e-42 gi|114603383|ref|XP_527118.2| PREDICTED: SH3 and P ( 910) 697 176.0 9.8e-42 gi|162317618|gb|AAI56243.1| SH3 and PX domains 2B ( 911) 697 176.0 9.8e-42 gi|109490465|ref|XP_001063612.1| PREDICTED: simila ( 907) 695 175.5 1.4e-41 gi|109079767|ref|XP_001095586.1| PREDICTED: simila ( 909) 693 175.0 1.9e-41 gi|162416204|sp|A1X283.2|SPD2B_HUMAN RecName: Full ( 911) 690 174.3 3.2e-41 gi|74132096|gb|AAZ99795.1| adaptor protein HOFI [H ( 911) 690 174.3 3.2e-41 gi|126291462|ref|XP_001380540.1| PREDICTED: simila (1063) 681 172.2 1.6e-40 gi|224067431|ref|XP_002195573.1| PREDICTED: SH3 an ( 883) 665 168.3 2e-39 gi|57032527|gb|AAH88911.1| LOC496321 protein [Xeno ( 590) 631 159.9 4.3e-37 gi|60649481|gb|AAH90430.1| Im:7155315 protein [Dan ( 562) 585 148.8 9e-34 gi|50417265|gb|AAH78272.1| Im:7155315 protein [Dan ( 563) 585 148.8 9e-34 gi|224052767|ref|XP_002193780.1| PREDICTED: SH3 an (1080) 553 141.4 3.1e-31 gi|109735007|gb|AAI18023.1| Sh3pxd2a protein [Mus ( 810) 550 140.5 4.1e-31 gi|126273155|ref|XP_001369016.1| PREDICTED: simila (1105) 550 140.6 5.2e-31 gi|181336814|ref|NP_032044.2| SH3 and PX domains 2 (1124) 550 140.6 5.3e-31 gi|81886907|sp|O89032.1|SPD2A_MOUSE RecName: Full= (1124) 550 140.6 5.3e-31 gi|126273153|ref|XP_001368985.1| PREDICTED: simila (1133) 550 140.6 5.3e-31 gi|109090476|ref|XP_001113943.1| PREDICTED: simila (1074) 549 140.4 6e-31 gi|149689696|ref|XP_001497955.1| PREDICTED: SH3 an (1100) 549 140.4 6.1e-31 gi|119570010|gb|EAW49625.1| SH3 and PX domains 2A, (1105) 549 140.4 6.2e-31 gi|114632680|ref|XP_508015.2| PREDICTED: SH3 multi (1105) 549 140.4 6.2e-31 gi|74746151|sp|Q5TCZ1.1|SPD2A_HUMAN RecName: Full= (1133) 549 140.4 6.3e-31 gi|148691808|gb|EDL23755.1| RIKEN cDNA G431001E03, ( 447) 532 136.0 5.3e-30 gi|194219601|ref|XP_001499665.2| PREDICTED: SH3 an ( 900) 532 136.2 9e-30 gi|73954039|ref|XP_546237.2| PREDICTED: similar to ( 884) 530 135.7 1.2e-29 gi|119912968|ref|XP_596546.3| PREDICTED: similar t ( 886) 528 135.3 1.7e-29 gi|189046688|sp|Q1LYG0.2|SPD2A_DANRE RecName: Full (1119) 525 134.6 3.4e-29 gi|62857981|ref|NP_001016567.1| hypothetical prote ( 89) 508 129.7 8.4e-29 gi|210085412|gb|EEA33881.1| hypothetical protein B ( 424) 513 131.4 1.2e-28 gi|118097320|ref|XP_425197.2| PREDICTED: similar t ( 845) 515 132.1 1.5e-28 gi|156211538|gb|EDO32640.1| predicted protein [Nem ( 590) 495 127.2 3.1e-27 gi|194678792|ref|XP_601330.4| PREDICTED: similar t ( 699) 474 122.2 1.2e-25 gi|198432026|ref|XP_002125414.1| PREDICTED: simila ( 765) 473 122.0 1.5e-25 gi|73998786|ref|XP_544004.2| PREDICTED: similar to (1141) 474 122.3 1.7e-25 gi|149634568|ref|XP_001512205.1| PREDICTED: simila (1081) 470 121.4 3.2e-25 gi|118092997|ref|XP_421741.2| PREDICTED: similar t (1108) 468 120.9 4.6e-25 gi|72177921|ref|XP_783086.1| PREDICTED: similar to ( 618) 453 117.1 3.6e-24 gi|67513952|dbj|BAD99568.1| neutrophil cytosolic f ( 461) 449 116.0 5.6e-24 gi|221118587|ref|XP_002156771.1| PREDICTED: simila ( 279) 368 96.3 2.9e-18 gi|55957186|emb|CAI13961.1| SH3 and PX domains 2A (1059) 372 97.7 4.1e-18 >>gi|26335013|dbj|BAC31207.1| unnamed protein product [M (128 aa) initn: 871 init1: 871 opt: 871 Z-score: 1143.8 bits: 217.2 E(): 5.3e-55 Smith-Waterman score: 871; 99.219% identity (100.000% similar) in 128 aa overlap (2-129:1-128) 10 20 30 40 50 60 mKIAA4 RQVLGGKDRFGPARPARRWARRTAMPPRRSIVEVKVLDVQKRRVPNKHYVYIIRVTWSSG .:::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|263 EVLGGKDRFGPARPARRWARRTAMPPRRSIVEVKVLDVQKRRVPNKHYVYIIRVTWSSG 10 20 30 40 50 70 80 90 100 110 120 mKIAA4 ATEAIYRRYSKFFDLQMQMLDKFPMEGGQKDPKQRIIPFLPGKILFRRSHIRDVAVKRLI :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|263 ATEAIYRRYSKFFDLQMQMLDKFPMEGGQKDPKQRIIPFLPGKILFRRSHIRDVAVKRLI 60 70 80 90 100 110 mKIAA4 PIDEYCKVS ::::::::: gi|263 PIDEYCKVS 120 >>gi|74199646|dbj|BAE41493.1| unnamed protein product [M (239 aa) initn: 701 init1: 701 opt: 701 Z-score: 918.8 bits: 176.5 E(): 1.8e-42 Smith-Waterman score: 701; 100.000% identity (100.000% similar) in 103 aa overlap (25-127:1-103) 10 20 30 40 50 60 mKIAA4 RQVLGGKDRFGPARPARRWARRTAMPPRRSIVEVKVLDVQKRRVPNKHYVYIIRVTWSSG :::::::::::::::::::::::::::::::::::: gi|741 MPPRRSIVEVKVLDVQKRRVPNKHYVYIIRVTWSSG 10 20 30 70 80 90 100 110 120 mKIAA4 ATEAIYRRYSKFFDLQMQMLDKFPMEGGQKDPKQRIIPFLPGKILFRRSHIRDVAVKRLI :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|741 ATEAIYRRYSKFFDLQMQMLDKFPMEGGQKDPKQRIIPFLPGKILFRRSHIRDVAVKRLI 40 50 60 70 80 90 mKIAA4 PIDEYCKVS ::::::: gi|741 PIDEYCKALIQLPPYISQCDEVLQFFETRPEDLNPPKEEHIGKKKSGNDPTSVDPMVLEQ 100 110 120 130 140 150 >>gi|26354430|dbj|BAC40843.1| unnamed protein product [M (471 aa) initn: 701 init1: 701 opt: 701 Z-score: 914.7 bits: 176.7 E(): 3e-42 Smith-Waterman score: 701; 100.000% identity (100.000% similar) in 103 aa overlap (25-127:1-103) 10 20 30 40 50 60 mKIAA4 RQVLGGKDRFGPARPARRWARRTAMPPRRSIVEVKVLDVQKRRVPNKHYVYIIRVTWSSG :::::::::::::::::::::::::::::::::::: gi|263 MPPRRSIVEVKVLDVQKRRVPNKHYVYIIRVTWSSG 10 20 30 70 80 90 100 110 120 mKIAA4 ATEAIYRRYSKFFDLQMQMLDKFPMEGGQKDPKQRIIPFLPGKILFRRSHIRDVAVKRLI :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|263 ATEAIYRRYSKFFDLQMQMLDKFPMEGGQKDPKQRIIPFLPGKILFRRSHIRDVAVKRLI 40 50 60 70 80 90 mKIAA4 PIDEYCKVS ::::::: gi|263 PIDEYCKALIQLPPYISQCDEVLQFFETRPEDLNPPKEEHIGKKKSGNDPTSVDPMVLEQ 100 110 120 130 140 150 >>gi|93099911|gb|AAI15712.1| Sh3pxd2b protein [Mus muscu (647 aa) initn: 701 init1: 701 opt: 701 Z-score: 912.8 bits: 176.8 E(): 3.9e-42 Smith-Waterman score: 701; 100.000% identity (100.000% similar) in 103 aa overlap (25-127:1-103) 10 20 30 40 50 60 mKIAA4 RQVLGGKDRFGPARPARRWARRTAMPPRRSIVEVKVLDVQKRRVPNKHYVYIIRVTWSSG :::::::::::::::::::::::::::::::::::: gi|930 MPPRRSIVEVKVLDVQKRRVPNKHYVYIIRVTWSSG 10 20 30 70 80 90 100 110 120 mKIAA4 ATEAIYRRYSKFFDLQMQMLDKFPMEGGQKDPKQRIIPFLPGKILFRRSHIRDVAVKRLI :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|930 ATEAIYRRYSKFFDLQMQMLDKFPMEGGQKDPKQRIIPFLPGKILFRRSHIRDVAVKRLI 40 50 60 70 80 90 mKIAA4 PIDEYCKVS ::::::: gi|930 PIDEYCKALIQLPPYISQCDEVLQFFETRPEDLNPPKEEHIGKKKSGNDPTSVDPMVLEQ 100 110 120 130 140 150 >>gi|93099936|gb|AAI15765.1| Sh3pxd2b protein [Mus muscu (647 aa) initn: 701 init1: 701 opt: 701 Z-score: 912.8 bits: 176.8 E(): 3.9e-42 Smith-Waterman score: 701; 100.000% identity (100.000% similar) in 103 aa overlap (25-127:1-103) 10 20 30 40 50 60 mKIAA4 RQVLGGKDRFGPARPARRWARRTAMPPRRSIVEVKVLDVQKRRVPNKHYVYIIRVTWSSG :::::::::::::::::::::::::::::::::::: gi|930 MPPRRSIVEVKVLDVQKRRVPNKHYVYIIRVTWSSG 10 20 30 70 80 90 100 110 120 mKIAA4 ATEAIYRRYSKFFDLQMQMLDKFPMEGGQKDPKQRIIPFLPGKILFRRSHIRDVAVKRLI :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|930 ATEAIYRRYSKFFDLQMQMLDKFPMEGGQKDPKQRIIPFLPGKILFRRSHIRDVAVKRLI 40 50 60 70 80 90 mKIAA4 PIDEYCKVS ::::::: gi|930 PIDEYCKALIQLPPYISQCDEVLQFFETRPEDLNPPKEEHIGKKKSGNDPTSVDPMVLEQ 100 110 120 130 140 150 >>gi|223461423|gb|AAI41307.1| SH3 and PX domains 2B [Mus (908 aa) initn: 701 init1: 701 opt: 701 Z-score: 910.8 bits: 176.9 E(): 5e-42 Smith-Waterman score: 701; 100.000% identity (100.000% similar) in 103 aa overlap (25-127:1-103) 10 20 30 40 50 60 mKIAA4 RQVLGGKDRFGPARPARRWARRTAMPPRRSIVEVKVLDVQKRRVPNKHYVYIIRVTWSSG :::::::::::::::::::::::::::::::::::: gi|223 MPPRRSIVEVKVLDVQKRRVPNKHYVYIIRVTWSSG 10 20 30 70 80 90 100 110 120 mKIAA4 ATEAIYRRYSKFFDLQMQMLDKFPMEGGQKDPKQRIIPFLPGKILFRRSHIRDVAVKRLI :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|223 ATEAIYRRYSKFFDLQMQMLDKFPMEGGQKDPKQRIIPFLPGKILFRRSHIRDVAVKRLI 40 50 60 70 80 90 mKIAA4 PIDEYCKVS ::::::: gi|223 PIDEYCKALIQLPPYISQCDEVLQFFETRPEDLNPPKEEHIGKKKSGNDPTSVDPMVLEQ 100 110 120 130 140 150 >>gi|162416033|sp|A2AAY5.1|SPD2B_MOUSE RecName: Full=SH3 (908 aa) initn: 701 init1: 701 opt: 701 Z-score: 910.8 bits: 176.9 E(): 5e-42 Smith-Waterman score: 701; 100.000% identity (100.000% similar) in 103 aa overlap (25-127:1-103) 10 20 30 40 50 60 mKIAA4 RQVLGGKDRFGPARPARRWARRTAMPPRRSIVEVKVLDVQKRRVPNKHYVYIIRVTWSSG :::::::::::::::::::::::::::::::::::: gi|162 MPPRRSIVEVKVLDVQKRRVPNKHYVYIIRVTWSSG 10 20 30 70 80 90 100 110 120 mKIAA4 ATEAIYRRYSKFFDLQMQMLDKFPMEGGQKDPKQRIIPFLPGKILFRRSHIRDVAVKRLI :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|162 ATEAIYRRYSKFFDLQMQMLDKFPMEGGQKDPKQRIIPFLPGKILFRRSHIRDVAVKRLI 40 50 60 70 80 90 mKIAA4 PIDEYCKVS ::::::: gi|162 PIDEYCKALIQLPPYISQCDEVLQFFETRPEDLNPPKEEHIGKKKSGNDPTSVDPMVLEQ 100 110 120 130 140 150 >>gi|74140592|dbj|BAE42425.1| unnamed protein product [M (910 aa) initn: 701 init1: 701 opt: 701 Z-score: 910.8 bits: 176.9 E(): 5e-42 Smith-Waterman score: 701; 100.000% identity (100.000% similar) in 103 aa overlap (25-127:1-103) 10 20 30 40 50 60 mKIAA4 RQVLGGKDRFGPARPARRWARRTAMPPRRSIVEVKVLDVQKRRVPNKHYVYIIRVTWSSG :::::::::::::::::::::::::::::::::::: gi|741 MPPRRSIVEVKVLDVQKRRVPNKHYVYIIRVTWSSG 10 20 30 70 80 90 100 110 120 mKIAA4 ATEAIYRRYSKFFDLQMQMLDKFPMEGGQKDPKQRIIPFLPGKILFRRSHIRDVAVKRLI :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|741 ATEAIYRRYSKFFDLQMQMLDKFPMEGGQKDPKQRIIPFLPGKILFRRSHIRDVAVKRLI 40 50 60 70 80 90 mKIAA4 PIDEYCKVS ::::::: gi|741 PIDEYCKALIQLPPYISQCDEVLQFFETRPEDLNPPKEEHIGKKKSGNDPTSVDPMVLEQ 100 110 120 130 140 150 >>gi|211925505|dbj|BAG81976.1| FAD49 [Mus musculus] (910 aa) initn: 701 init1: 701 opt: 701 Z-score: 910.8 bits: 176.9 E(): 5e-42 Smith-Waterman score: 701; 100.000% identity (100.000% similar) in 103 aa overlap (25-127:1-103) 10 20 30 40 50 60 mKIAA4 RQVLGGKDRFGPARPARRWARRTAMPPRRSIVEVKVLDVQKRRVPNKHYVYIIRVTWSSG :::::::::::::::::::::::::::::::::::: gi|211 MPPRRSIVEVKVLDVQKRRVPNKHYVYIIRVTWSSG 10 20 30 70 80 90 100 110 120 mKIAA4 ATEAIYRRYSKFFDLQMQMLDKFPMEGGQKDPKQRIIPFLPGKILFRRSHIRDVAVKRLI :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|211 ATEAIYRRYSKFFDLQMQMLDKFPMEGGQKDPKQRIIPFLPGKILFRRSHIRDVAVKRLI 40 50 60 70 80 90 mKIAA4 PIDEYCKVS ::::::: gi|211 PIDEYCKALIQLPPYISQCDEVLQFFETRPEDLNPPKEEHIGKKKSGNDPTSVDPMVLEQ 100 110 120 130 140 150 >>gi|119581836|gb|EAW61432.1| SH3 and PX domains 2B, iso (430 aa) initn: 697 init1: 697 opt: 697 Z-score: 910.0 bits: 175.7 E(): 5.5e-42 Smith-Waterman score: 697; 99.029% identity (100.000% similar) in 103 aa overlap (25-127:1-103) 10 20 30 40 50 60 mKIAA4 RQVLGGKDRFGPARPARRWARRTAMPPRRSIVEVKVLDVQKRRVPNKHYVYIIRVTWSSG :::::::::::::::::::::::::::::::::::: gi|119 MPPRRSIVEVKVLDVQKRRVPNKHYVYIIRVTWSSG 10 20 30 70 80 90 100 110 120 mKIAA4 ATEAIYRRYSKFFDLQMQMLDKFPMEGGQKDPKQRIIPFLPGKILFRRSHIRDVAVKRLI .::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|119 STEAIYRRYSKFFDLQMQMLDKFPMEGGQKDPKQRIIPFLPGKILFRRSHIRDVAVKRLI 40 50 60 70 80 90 mKIAA4 PIDEYCKVS ::::::: gi|119 PIDEYCKALIQLPPYISQCDEVLQFFETRPEDLNPPKEEHIGKKKSGGDQTSVDPMVLEQ 100 110 120 130 140 150 129 residues in 1 query sequences 2727779818 residues in 7921681 library sequences Tcomplib [34.26] (2 proc) start: Tue Mar 17 08:50:06 2009 done: Tue Mar 17 08:53:56 2009 Total Scan time: 553.420 Total Display time: 0.020 Function used was FASTA [version 34.26.5 April 26, 2007]