# /usr/local/bin/fasta34_t -T 4 -b50 -d10 -E0.01 -H -O./tmp/mph02039.fasta.nr -Q ../query/mKIAA3012.ptfa /cdna4/rodent/rouge_util/new.rouge/nfasta/nr 2 FASTA searches a protein or DNA sequence data bank version 34.26.5 April 26, 2007 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 mKIAA3012, 253 aa vs /cdna4/rodent/rouge_util/new.rouge/nfasta/nr library 2727779818 residues in 7921681 sequences statistics sampled from 60000 to 7908189 sequences Expectation_n fit: rho(ln(x))= 5.3858+/-0.000191; mu= 7.8489+/- 0.011 mean_var=81.6212+/-16.129, 0's: 40 Z-trim: 131 B-trim: 1553 in 1/65 Lambda= 0.141962 FASTA (3.5 Sept 2006) function [optimized, BL50 matrix (15:-5)] ktup: 2 join: 36, opt: 24, open/ext: -10/-2, width: 16 The best scores are: opt bits E(7921681) gi|119620329|gb|EAW99923.1| RAB1A, member RAS onco ( 257) 1408 297.5 1.5e-78 gi|51338603|sp|P62820.3|RAB1A_HUMAN RecName: Full= ( 205) 1321 279.6 2.9e-73 gi|54695924|gb|AAV38334.1| RAB1A, member RAS oncog ( 206) 1321 279.6 2.9e-73 gi|74185239|dbj|BAE30098.1| unnamed protein produc ( 205) 1316 278.5 5.8e-73 gi|197127903|gb|ACH44401.1| putative RAB1B member ( 205) 1313 277.9 8.9e-73 gi|75056559|sp|Q52NJ2.3|RAB1A_PIG RecName: Full=Ra ( 205) 1312 277.7 1e-72 gi|206553|gb|AAA42006.1| ras protein ( 205) 1309 277.1 1.6e-72 gi|56205120|emb|CAI24449.1| RAB1, member RAS oncog ( 202) 1304 276.1 3.2e-72 gi|197127906|gb|ACH44404.1| putative RAB1B member ( 205) 1302 275.7 4.2e-72 gi|27924279|gb|AAH45014.1| Rab1-prov protein [Xeno ( 204) 1286 272.4 4.1e-71 gi|114577812|ref|XP_530454.2| PREDICTED: hypotheti ( 211) 1284 272.0 5.6e-71 gi|131785|sp|P22125.1|RAB1_DISOM RecName: Full=Ras ( 202) 1279 271.0 1.1e-70 gi|109103158|ref|XP_001089840.1| PREDICTED: simila ( 204) 1275 270.1 1.9e-70 gi|149640905|ref|XP_001513393.1| PREDICTED: simila ( 228) 1274 270.0 2.4e-70 gi|197127904|gb|ACH44402.1| putative RAB1B member ( 217) 1272 269.6 3.1e-70 gi|221220558|gb|ACM08940.1| Ras-related protein Ra ( 202) 1265 268.1 8e-70 gi|223649310|gb|ACN11413.1| Ras-related protein Ra ( 202) 1263 267.7 1.1e-69 gi|27817324|emb|CAD61089.1| novel protein similar ( 201) 1245 264.0 1.4e-68 gi|28839092|gb|AAH47816.1| Zgc:56049 [Danio rerio] ( 201) 1244 263.8 1.6e-68 gi|220673266|emb|CAX13666.1| novel protein similar ( 201) 1231 261.1 9.9e-68 gi|66911050|gb|AAH97013.1| Zgc:86773 protein [Dani ( 201) 1219 258.7 5.5e-67 gi|210118783|gb|EEA66512.1| hypothetical protein B ( 204) 1216 258.1 8.5e-67 gi|110832072|sp|Q2HJH2.1|RAB1B_BOVIN RecName: Full ( 201) 1214 257.6 1.1e-66 gi|126697336|gb|ABO26625.1| Ras-related protein Ra ( 205) 1210 256.8 2e-66 gi|226486|prf||1515250A rab1B protein ( 201) 1209 256.6 2.3e-66 gi|109105440|ref|XP_001118047.1| PREDICTED: simila ( 271) 1209 256.7 2.8e-66 gi|23396834|sp|Q9H0U4.1|RAB1B_HUMAN RecName: Full= ( 201) 1206 256.0 3.5e-66 gi|109511883|ref|XP_001061706.1| PREDICTED: simila ( 288) 1204 255.7 6.1e-66 gi|122064946|sp|Q06AU7.1|RAB1B_PIG RecName: Full=R ( 201) 1202 255.2 6.1e-66 gi|49065350|emb|CAG38493.1| RAB1B [Homo sapiens] ( 201) 1202 255.2 6.1e-66 gi|156219283|gb|EDO40167.1| predicted protein [Nem ( 205) 1202 255.2 6.2e-66 gi|75077202|sp|Q4R8X3.1|RAB1B_MACFA RecName: Full= ( 201) 1200 254.8 8.1e-66 gi|149042337|gb|EDL96044.1| rCG63295 [Rattus norve ( 201) 1198 254.4 1.1e-65 gi|46577116|sp|Q9D1G1.1|RAB1B_MOUSE RecName: Full= ( 201) 1197 254.2 1.2e-65 gi|131803|sp|P10536.1|RAB1B_RAT RecName: Full=Ras- ( 201) 1197 254.2 1.2e-65 gi|114638536|ref|XP_001150399.1| PREDICTED: simila ( 255) 1198 254.5 1.3e-65 gi|74193229|dbj|BAE20616.1| unnamed protein produc ( 201) 1195 253.8 1.6e-65 gi|126338784|ref|XP_001365286.1| PREDICTED: hypoth ( 201) 1178 250.3 1.8e-64 gi|221116035|ref|XP_002155975.1| PREDICTED: simila ( 202) 1166 247.8 1e-63 gi|198415359|ref|XP_002126732.1| PREDICTED: simila ( 204) 1162 247.0 1.8e-63 gi|464524|sp|Q05974.1|RAB1A_LYMST RecName: Full=Ra ( 205) 1162 247.0 1.8e-63 gi|190589897|gb|EDV29919.1| GTP-binding protein o- ( 202) 1145 243.5 2e-62 gi|193806493|sp|Q92928.2|RAB1C_HUMAN RecName: Full ( 201) 1144 243.3 2.3e-62 gi|47211161|emb|CAF92536.1| unnamed protein produc ( 247) 1136 241.7 8.4e-62 gi|66556180|ref|XP_392967.2| PREDICTED: similar to ( 206) 1120 238.4 7.1e-61 gi|91087113|ref|XP_975150.1| PREDICTED: similar to ( 202) 1106 235.5 5.1e-60 gi|194142033|gb|EDW58441.1| GJ14443 [Drosophila vi ( 205) 1102 234.7 9.1e-60 gi|194170237|gb|EDW85138.1| GK12772 [Drosophila wi ( 205) 1101 234.5 1e-59 gi|193918105|gb|EDW16972.1| GI10837 [Drosophila mo ( 205) 1101 234.5 1e-59 gi|88193099|pdb|2FOL|A Chain A, Crystal Structure ( 191) 1097 233.7 1.7e-59 >>gi|119620329|gb|EAW99923.1| RAB1A, member RAS oncogene (257 aa) initn: 1408 init1: 1408 opt: 1408 Z-score: 1566.7 bits: 297.5 E(): 1.5e-78 Smith-Waterman score: 1408; 99.537% identity (99.537% similar) in 216 aa overlap (38-253:42-257) 10 20 30 40 50 60 mKIAA3 LLYRNSLAHSSLSITCGAESWGGGCVSKGGGGGGGGGSCSDMSSMNPEYDYLFKLLLIGD :::::::::::::::::::::::::::::: gi|119 ESWPCVALSVLSSRSRARDSLSRHARRGSKGGGGGGGSCSDMSSMNPEYDYLFKLLLIGD 20 30 40 50 60 70 70 80 90 100 110 120 mKIAA3 SGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQRWDTAGQERFRTITSS :::::::::::::::::::::::::::::::::::::::::::: ::::::::::::::: gi|119 SGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSS 80 90 100 110 120 130 130 140 150 160 170 180 mKIAA3 YYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLTTKKVVDYTTA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|119 YYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLTTKKVVDYTTA 140 150 160 170 180 190 190 200 210 220 230 240 mKIAA3 KEFADSLGIPFLETSAKNATNVEQSFMTMAAEIKKRMGPGATAGGAEKSNVKIQSTPVKQ :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|119 KEFADSLGIPFLETSAKNATNVEQSFMTMAAEIKKRMGPGATAGGAEKSNVKIQSTPVKQ 200 210 220 230 240 250 250 mKIAA3 SGGGCC :::::: gi|119 SGGGCC >>gi|51338603|sp|P62820.3|RAB1A_HUMAN RecName: Full=Ras- (205 aa) initn: 1321 init1: 1321 opt: 1321 Z-score: 1471.8 bits: 279.6 E(): 2.9e-73 Smith-Waterman score: 1321; 99.512% identity (99.512% similar) in 205 aa overlap (49-253:1-205) 20 30 40 50 60 70 mKIAA3 LSITCGAESWGGGCVSKGGGGGGGGGSCSDMSSMNPEYDYLFKLLLIGDSGVGKSCLLLR :::::::::::::::::::::::::::::: gi|513 MSSMNPEYDYLFKLLLIGDSGVGKSCLLLR 10 20 30 80 90 100 110 120 130 mKIAA3 FADDTYTESYISTIGVDFKIRTIELDGKTIKLQRWDTAGQERFRTITSSYYRGAHGIIVV ::::::::::::::::::::::::::::::::: :::::::::::::::::::::::::: gi|513 FADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVV 40 50 60 70 80 90 140 150 160 170 180 190 mKIAA3 YDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLTTKKVVDYTTAKEFADSLGIPF :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|513 YDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLTTKKVVDYTTAKEFADSLGIPF 100 110 120 130 140 150 200 210 220 230 240 250 mKIAA3 LETSAKNATNVEQSFMTMAAEIKKRMGPGATAGGAEKSNVKIQSTPVKQSGGGCC ::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|513 LETSAKNATNVEQSFMTMAAEIKKRMGPGATAGGAEKSNVKIQSTPVKQSGGGCC 160 170 180 190 200 >>gi|54695924|gb|AAV38334.1| RAB1A, member RAS oncogene (206 aa) initn: 1321 init1: 1321 opt: 1321 Z-score: 1471.7 bits: 279.6 E(): 2.9e-73 Smith-Waterman score: 1321; 99.512% identity (99.512% similar) in 205 aa overlap (49-253:1-205) 20 30 40 50 60 70 mKIAA3 LSITCGAESWGGGCVSKGGGGGGGGGSCSDMSSMNPEYDYLFKLLLIGDSGVGKSCLLLR :::::::::::::::::::::::::::::: gi|546 MSSMNPEYDYLFKLLLIGDSGVGKSCLLLR 10 20 30 80 90 100 110 120 130 mKIAA3 FADDTYTESYISTIGVDFKIRTIELDGKTIKLQRWDTAGQERFRTITSSYYRGAHGIIVV ::::::::::::::::::::::::::::::::: :::::::::::::::::::::::::: gi|546 FADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVV 40 50 60 70 80 90 140 150 160 170 180 190 mKIAA3 YDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLTTKKVVDYTTAKEFADSLGIPF :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|546 YDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLTTKKVVDYTTAKEFADSLGIPF 100 110 120 130 140 150 200 210 220 230 240 250 mKIAA3 LETSAKNATNVEQSFMTMAAEIKKRMGPGATAGGAEKSNVKIQSTPVKQSGGGCC ::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|546 LETSAKNATNVEQSFMTMAAEIKKRMGPGATAGGAEKSNVKIQSTPVKQSGGGCCL 160 170 180 190 200 >>gi|74185239|dbj|BAE30098.1| unnamed protein product [M (205 aa) initn: 1316 init1: 1316 opt: 1316 Z-score: 1466.2 bits: 278.5 E(): 5.8e-73 Smith-Waterman score: 1316; 99.024% identity (99.512% similar) in 205 aa overlap (49-253:1-205) 20 30 40 50 60 70 mKIAA3 LSITCGAESWGGGCVSKGGGGGGGGGSCSDMSSMNPEYDYLFKLLLIGDSGVGKSCLLLR :::::::::::::::::::::::::::::: gi|741 MSSMNPEYDYLFKLLLIGDSGVGKSCLLLR 10 20 30 80 90 100 110 120 130 mKIAA3 FADDTYTESYISTIGVDFKIRTIELDGKTIKLQRWDTAGQERFRTITSSYYRGAHGIIVV ::::::::::::::::::::::::::::::::: :::::.:::::::::::::::::::: gi|741 FADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGEERFRTITSSYYRGAHGIIVV 40 50 60 70 80 90 140 150 160 170 180 190 mKIAA3 YDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLTTKKVVDYTTAKEFADSLGIPF :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|741 YDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLTTKKVVDYTTAKEFADSLGIPF 100 110 120 130 140 150 200 210 220 230 240 250 mKIAA3 LETSAKNATNVEQSFMTMAAEIKKRMGPGATAGGAEKSNVKIQSTPVKQSGGGCC ::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|741 LETSAKNATNVEQSFMTMAAEIKKRMGPGATAGGAEKSNVKIQSTPVKQSGGGCC 160 170 180 190 200 >>gi|197127903|gb|ACH44401.1| putative RAB1B member RAS (205 aa) initn: 1313 init1: 1313 opt: 1313 Z-score: 1462.9 bits: 277.9 E(): 8.9e-73 Smith-Waterman score: 1313; 99.024% identity (99.512% similar) in 205 aa overlap (49-253:1-205) 20 30 40 50 60 70 mKIAA3 LSITCGAESWGGGCVSKGGGGGGGGGSCSDMSSMNPEYDYLFKLLLIGDSGVGKSCLLLR :::::::::::::::::::::::::::::: gi|197 MSSMNPEYDYLFKLLLIGDSGVGKSCLLLR 10 20 30 80 90 100 110 120 130 mKIAA3 FADDTYTESYISTIGVDFKIRTIELDGKTIKLQRWDTAGQERFRTITSSYYRGAHGIIVV ::::::::::::::::::::::::::::::::: :::::::::::::::::::::::::: gi|197 FADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVV 40 50 60 70 80 90 140 150 160 170 180 190 mKIAA3 YDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLTTKKVVDYTTAKEFADSLGIPF :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|197 YDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLTTKKVVDYTTAKEFADSLGIPF 100 110 120 130 140 150 200 210 220 230 240 250 mKIAA3 LETSAKNATNVEQSFMTMAAEIKKRMGPGATAGGAEKSNVKIQSTPVKQSGGGCC ::::::::::::::::::::::::::::::::::::::::::::::::::.:::: gi|197 LETSAKNATNVEQSFMTMAAEIKKRMGPGATAGGAEKSNVKIQSTPVKQSSGGCC 160 170 180 190 200 >>gi|75056559|sp|Q52NJ2.3|RAB1A_PIG RecName: Full=Ras-re (205 aa) initn: 1312 init1: 1312 opt: 1312 Z-score: 1461.8 bits: 277.7 E(): 1e-72 Smith-Waterman score: 1312; 99.024% identity (99.024% similar) in 205 aa overlap (49-253:1-205) 20 30 40 50 60 70 mKIAA3 LSITCGAESWGGGCVSKGGGGGGGGGSCSDMSSMNPEYDYLFKLLLIGDSGVGKSCLLLR :::::::::::::::::::::::::::::: gi|750 MSSMNPEYDYLFKLLLIGDSGVGKSCLLLR 10 20 30 80 90 100 110 120 130 mKIAA3 FADDTYTESYISTIGVDFKIRTIELDGKTIKLQRWDTAGQERFRTITSSYYRGAHGIIVV ::::::::::::::::::::::::::::::::: :::::::::::::::::::::::::: gi|750 FADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVV 40 50 60 70 80 90 140 150 160 170 180 190 mKIAA3 YDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLTTKKVVDYTTAKEFADSLGIPF :::::: ::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|750 YDVTDQGSFNNVKQWLQEIDRYASENVNKLLVGNKCDLTTKKVVDYTTAKEFADSLGIPF 100 110 120 130 140 150 200 210 220 230 240 250 mKIAA3 LETSAKNATNVEQSFMTMAAEIKKRMGPGATAGGAEKSNVKIQSTPVKQSGGGCC ::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|750 LETSAKNATNVEQSFMTMAAEIKKRMGPGATAGGAEKSNVKIQSTPVKQSGGGCC 160 170 180 190 200 >>gi|206553|gb|AAA42006.1| ras protein (205 aa) initn: 1309 init1: 1309 opt: 1309 Z-score: 1458.5 bits: 277.1 E(): 1.6e-72 Smith-Waterman score: 1309; 98.537% identity (98.537% similar) in 205 aa overlap (49-253:1-205) 20 30 40 50 60 70 mKIAA3 LSITCGAESWGGGCVSKGGGGGGGGGSCSDMSSMNPEYDYLFKLLLIGDSGVGKSCLLLR :::::::::::::::::::::::::::::: gi|206 MSSMNPEYDYLFKLLLIGDSGVGKSCLLLR 10 20 30 80 90 100 110 120 130 mKIAA3 FADDTYTESYISTIGVDFKIRTIELDGKTIKLQRWDTAGQERFRTITSSYYRGAHGIIVV ::::::::::::::::::::::::::::::::: :::::::::::::::::::::::::: gi|206 FADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVV 40 50 60 70 80 90 140 150 160 170 180 190 mKIAA3 YDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLTTKKVVDYTTAKEFADSLGIPF :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|206 YDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLTTKKVVDYTTAKEFADSLGIPF 100 110 120 130 140 150 200 210 220 230 240 250 mKIAA3 LETSAKNATNVEQSFMTMAAEIKKRMGPGATAGGAEKSNVKIQSTPVKQSGGGCC ::::::: :::::::::::::::::::::::::::::::::::::::::::::: gi|206 LETSAKNEKNVEQSFMTMAAEIKKRMGPGATAGGAEKSNVKIQSTPVKQSGGGCC 160 170 180 190 200 >>gi|56205120|emb|CAI24449.1| RAB1, member RAS oncogene (202 aa) initn: 1304 init1: 1304 opt: 1304 Z-score: 1453.0 bits: 276.1 E(): 3.2e-72 Smith-Waterman score: 1304; 99.505% identity (99.505% similar) in 202 aa overlap (52-253:1-202) 30 40 50 60 70 80 mKIAA3 TCGAESWGGGCVSKGGGGGGGGGSCSDMSSMNPEYDYLFKLLLIGDSGVGKSCLLLRFAD :::::::::::::::::::::::::::::: gi|562 MNPEYDYLFKLLLIGDSGVGKSCLLLRFAD 10 20 30 90 100 110 120 130 140 mKIAA3 DTYTESYISTIGVDFKIRTIELDGKTIKLQRWDTAGQERFRTITSSYYRGAHGIIVVYDV :::::::::::::::::::::::::::::: ::::::::::::::::::::::::::::: gi|562 DTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDV 40 50 60 70 80 90 150 160 170 180 190 200 mKIAA3 TDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLTTKKVVDYTTAKEFADSLGIPFLET :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|562 TDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLTTKKVVDYTTAKEFADSLGIPFLET 100 110 120 130 140 150 210 220 230 240 250 mKIAA3 SAKNATNVEQSFMTMAAEIKKRMGPGATAGGAEKSNVKIQSTPVKQSGGGCC :::::::::::::::::::::::::::::::::::::::::::::::::::: gi|562 SAKNATNVEQSFMTMAAEIKKRMGPGATAGGAEKSNVKIQSTPVKQSGGGCC 160 170 180 190 200 >>gi|197127906|gb|ACH44404.1| putative RAB1B member RAS (205 aa) initn: 1302 init1: 1302 opt: 1302 Z-score: 1450.7 bits: 275.7 E(): 4.2e-72 Smith-Waterman score: 1302; 98.537% identity (99.024% similar) in 205 aa overlap (49-253:1-205) 20 30 40 50 60 70 mKIAA3 LSITCGAESWGGGCVSKGGGGGGGGGSCSDMSSMNPEYDYLFKLLLIGDSGVGKSCLLLR :::::::::::::::::::::::::::::: gi|197 MSSMNPEYDYLFKLLLIGDSGVGKSCLLLR 10 20 30 80 90 100 110 120 130 mKIAA3 FADDTYTESYISTIGVDFKIRTIELDGKTIKLQRWDTAGQERFRTITSSYYRGAHGIIVV ::::::::::::::::::::::::::::::::: :::::::::::::::::::::::::: gi|197 FADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVV 40 50 60 70 80 90 140 150 160 170 180 190 mKIAA3 YDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLTTKKVVDYTTAKEFADSLGIPF :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|197 YDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLTTKKVVDYTTAKEFADSLGIPF 100 110 120 130 140 150 200 210 220 230 240 250 mKIAA3 LETSAKNATNVEQSFMTMAAEIKKRMGPGATAGGAEKSNVKIQSTPVKQSGGGCC ::::::::::::::::::::::::::::::::::::::::::::: ::::.:::: gi|197 LETSAKNATNVEQSFMTMAAEIKKRMGPGATAGGAEKSNVKIQSTKVKQSSGGCC 160 170 180 190 200 >>gi|27924279|gb|AAH45014.1| Rab1-prov protein [Xenopus (204 aa) initn: 1200 init1: 1200 opt: 1286 Z-score: 1433.0 bits: 272.4 E(): 4.1e-71 Smith-Waterman score: 1286; 97.561% identity (98.537% similar) in 205 aa overlap (49-253:1-204) 20 30 40 50 60 70 mKIAA3 LSITCGAESWGGGCVSKGGGGGGGGGSCSDMSSMNPEYDYLFKLLLIGDSGVGKSCLLLR :::::::::::::::::::::::::::::: gi|279 MSSMNPEYDYLFKLLLIGDSGVGKSCLLLR 10 20 30 80 90 100 110 120 130 mKIAA3 FADDTYTESYISTIGVDFKIRTIELDGKTIKLQRWDTAGQERFRTITSSYYRGAHGIIVV ::::::::::::::::::::::::::::::::: :::::::::::::::::::::::::: gi|279 FADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVV 40 50 60 70 80 90 140 150 160 170 180 190 mKIAA3 YDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLTTKKVVDYTTAKEFADSLGIPF :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|279 YDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLTTKKVVDYTTAKEFADSLGIPF 100 110 120 130 140 150 200 210 220 230 240 250 mKIAA3 LETSAKNATNVEQSFMTMAAEIKKRMGPGATAGGAEKSNVKIQSTPVKQSGGGCC :::::::::::::.:::::::::::::::::::: :: ::::::::::::.:::: gi|279 LETSAKNATNVEQAFMTMAAEIKKRMGPGATAGGQEK-NVKIQSTPVKQSSGGCC 160 170 180 190 200 253 residues in 1 query sequences 2727779818 residues in 7921681 library sequences Tcomplib [34.26] (2 proc) start: Mon Mar 16 22:27:43 2009 done: Mon Mar 16 22:32:58 2009 Total Scan time: 736.360 Total Display time: 0.030 Function used was FASTA [version 34.26.5 April 26, 2007]