FASTA searches a protein or DNA sequence data bank
 version 3.4t11 Apr 17, 2002
Please cite:
 W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

 ../query/mKIAA0156.ptfa, 968 aa
 vs ./tmplib.26680 library

1768049 residues in  2168 sequences
  Expectation_n fit: rho(ln(x))= 7.2776+/-0.00656; mu= 7.4016+/- 0.438
 mean_var=230.0149+/-53.269, 0's: 0 Z-trim: 2  B-trim: 0 in 0/36
 Lambda= 0.0846

FASTA (3.45 Mar 2002) function [optimized, BL50 matrix (15:-5)] ktup: 2
 join: 39, opt: 27, open/ext: -10/-2, width:  16
The best scores are:                                       opt bits E(2168)
mKIAA4193  ( 703 res)   mid07075                   ( 703)  212   39  0.0021


>>mKIAA4193  ( 703 res)   mid07075                        (703 aa)
 initn: 164 init1:  73 opt: 212  Z-score: 153.4  bits: 39.4 E(): 0.0021
Smith-Waterman score: 220;  22.997% identity (25.581% ungapped) in 287 aa overlap (643-915:7-278)

            620       630       640       650       660         670
mKIAA0 KALKKKKKTRGADKRREDEDEENEWGEEEEEQPSKRRRTENSLASGEASAM--KEETELS
                                     ..:. .. . .  :..:..:   : : : .
mKIAA4                         RARSLTQSPDAEKMAAGVEAAAEVAATEPKMEEESG
                                       10        20        30      

              680                690        700       710       720
mKIAA0 GKCLTIDVGPPS---------KQKEKAASLKRDMPKVA-HDSSKDSVTVFVSNLPYSIEE
       . :.    : :.         ..:.:  ..::   .   ...      .:..:.:.... 
mKIAA4 APCVPSGNGAPGPKGEERPTQNEKRKEKNIKRGGNRFEPYSNPTKRYRAFITNIPFDVKW
         40        50        60        70        80        90      

              730       740       750       760        770         
mKIAA0 PEVKLRPLFEVCGEVVQIRPIFSNRGDFRGYCYVEFGEEKSAQQALE-LDRKIVEGRPMF
         .:   . :  :::. .. ... .:  ::   :::  :.: ..: : :... . :::. 
mKIAA4 QSLK-DLVKEKVGEVTYVELLMDAEGKSRGCAVVEFKMEESMKKAAEVLNKHSLSGRPLK
        100        110       120       130       140       150     

     780       790       800       810       820       830         
mKIAA0 VSPCVDKSKNPDFKVCFLKKGVFRVGCPIGSAQGLPFSCTKEELEDICKAHGTVKDLRLV
       :.   :  .    .  . : :  :.:  .  :. : ..   ..:... .  :.:    ..
mKIAA4 VKEDPDGEHA---RRAMQKAG--RLGSTVFVAN-LDYKVGWKKLKEVFSMAGVVVRADIL
         160          170         180        190       200         

     840       850       860       870       880       890         
mKIAA0 TNRAGKPKGLAYVEYENESQASQAVMKMDGMTIRENVIKVAISNPPQRKVPEKPEVRTAP
        .. :: .:.. : .:.  .: ::.  ..:. . .  ..: ..   .: .:.       :
mKIAA4 EDKDGKSRGIGIVTFEQSIEAVQAISMFNGQLLFDRPMHVKMD---ERALPKGDFF---P
     210       220       230       240       250          260      

     900        910       920       930       940       950        
mKIAA0 GAPMLPRQM-YGARGKGRTQLSLLPRALQRQGAAPQAENGPAPGPAVAPSVATEAPKMSN
         :  :.:. .:  : :                                           
mKIAA4 --PERPQQLPHGLGGIGMGLGPGGQPIDANHLSKGIGMGNLGPAGMGMEGIGFGINKIGG
             270       280       290       300       310       320 




968 residues in 1 query   sequences
1768049 residues in 2168 library sequences
 Scomplib [34t11]
 start: Mon Mar 27 10:13:22 2006 done: Mon Mar 27 10:13:23 2006
 Scan time:  1.000 Display time:  0.030

Function used was FASTA [version 3.4t11 Apr 17, 2002]