FASTA searches a protein or DNA sequence data bank version 3.4t11 Apr 17, 2002 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 ../query/mKIAA0030.ptfa, 907 aa vs ./tmplib.26680 library 1768110 residues in 2168 sequences Expectation_n fit: rho(ln(x))= 4.7894+/-0.00501; mu= 20.2321+/- 0.334 mean_var=138.5518+/-32.237, 0's: 0 Z-trim: 2 B-trim: 0 in 0/36 Lambda= 0.1090 FASTA (3.45 Mar 2002) function [optimized, BL50 matrix (15:-5)] ktup: 2 join: 39, opt: 27, open/ext: -10/-2, width: 16 The best scores are: opt bits E(2168) mKIAA4003 ( 677 res) mfj10260 ( 677) 745 129 1.8e-30 >>mKIAA4003 ( 677 res) mfj10260 (677 aa) initn: 1045 init1: 586 opt: 745 Z-score: 639.2 bits: 129.1 E(): 1.8e-30 Smith-Waterman score: 1139; 35.605% identity (38.139% ungapped) in 587 aa overlap (233-805:22-583) 210 220 230 240 250 260 mKIAA0 KNFLRTHVDSHGHNVFKERISDMCKENRESLVVNYEDLAAREHVLAYFLPEAPAELLQIF : :: : . . . : : : :.. : mKIAA4 ILLNLCTCNNLERLILQESHFLNVNCEHIKSFSKNLYRQLISYPQEVIPTF 10 20 30 40 50 270 280 290 300 310 320 mKIAA0 DEAALEVVLAMYPKYDRITNH-IHVRISHLPLVEELRSLRQLHLNQLIRTSGVVTSCTGV : :. :. . :: : : .: :.:: . .. .:.: ..::: ::.: . . mKIAA4 DMAVNEIFFDRYP--DSILEHQIQVRPFNALKTKSMRNLNPEDIDQLITISGMVIRTSQL 60 70 80 90 100 330 340 350 360 370 380 mKIAA0 LPQLSMVKYNCSKCNFVLGPFCQSQNQEVKPGSCPECQSAGPFEINMEETIYQNYQRIRI .:... . ..:. : . .... ..: :: .:... . . ....... : :.. mKIAA4 IPEMQEAFFQCQVCAHTTR-VEIDRGRIAEPCSCVHCHTTHSMALIHNRSFFSDKQMIKL 110 120 130 140 150 160 390 400 410 420 430 mKIAA0 QESPGKVAAGRLPRSKDAILLA--DLVDSCKPGDEIELTGIYHN-NYDGSLNTANGFPVF :::: . ::. :.. .:.: ::::. .:::....::::. . ..: :. mKIAA4 QESPEDMPAGQTPHT--IVLFAHNDLVDKVQPGDRVNVTGIYRAVPIRVNPRVSNVKSVY 170 180 190 200 210 220 440 450 460 470 480 490 mKIAA0 ATIILANHVAKKDNKVAVGE--------LTDEDVKMITGLSKDQQIGEKIFASIAPSIYG : : . : : : : : .... ::.. ::. .: :.. ...::::: mKIAA4 KTHIDVIHYRKTDAKRLHGLDEEAEQKLFSEKRVKLLKELSRKPDIYERLASALAPSIYE 230 240 250 260 270 280 500 510 520 530 540 mKIAA0 HEDIKRGLALALFGGEPKNPG--GKHKVRGDINVLLCGDPGTAKSQFLKYIEKVSSRAIF :::::.:. : :::: :. . :. : :..::.::::::::.:::.:.:. .. :. . mKIAA4 HEDIKKGILLQLFGGTRKDFSHTGRGKFRAEINILLCGDPGTSKSQLLQYVYNLVPRGQY 290 300 310 320 330 340 550 560 570 580 590 600 mKIAA0 TTGQGASAVGLTAYVQRHPVSREWTLEAGALVLADRGVCLIDEFDKMNDQDRTSIHEAME :.:.:.:::::::::.. : .:. .:..:::::.: :.: ::::::::.. :. .::.:: mKIAA4 TSGKGSSAVGLTAYVMKDPETRQLVLQTGALVLSDNGICCIDEFDKMNESTRSVLHEVME 350 360 370 380 390 400 610 620 630 640 650 660 mKIAA0 QQSISISKAGIVTSLQARCTVIAAANPIGGRYDPSLTFSENVDLTEPIISRFDVLCVVRD ::..::.::::. .:.:: .:.:::::: ....:. : ::..: . ..::::.. .. : mKIAA4 QQTLSIAKAGIICQLNARTSVLAAANPIESQWNPKKTTIENIQLPHTLLSRFDLIFLMLD 410 420 430 440 450 460 670 680 690 700 710 720 mKIAA0 TVDPVQDEMLARFVVGSHVRHHPSNKKDEGLTNGGTLEPAMPNTYGVEPLPQEVLKKYII : . :. ::. .:. . .. .. .: : : . ::: :: mKIAA4 PQDEAYDRRLAHHLVS--LYYQSEEQVEE------------------EFLDMAVLKDYIA 470 480 490 500 730 740 750 760 770 780 mKIAA0 YAKERVRPKLNQMDQDKVARMYSDLRKESMATGSIPITVRHIESMIRMAEAHARMHLRDY ::. . :.:.. .. . . : ..:: . . : . :..::.::.:::::.... . mKIAA4 YAHSTIMPRLSEEASQALIEAYVNMRKIGSSRGMVSAYPRQLESLIRLAEAHAKVRFSNK 510 520 530 540 550 560 790 800 810 820 830 840 mKIAA0 VMEDDVNMAIRVMMESFIDTQKFSVMRSMRKTFARYLSFRRDNNDLLLFILKQLVAEQVT : ::. : :. :.. mKIAA4 VEAIDVEEAKRLHREALKQSATDPRTGIVDISILTTGMSATSRKRKEELAEALRKLILSK 570 580 590 600 610 620 907 residues in 1 query sequences 1768110 residues in 2168 library sequences Scomplib [34t11] start: Mon Mar 27 10:10:52 2006 done: Mon Mar 27 10:10:53 2006 Scan time: 0.970 Display time: 0.050 Function used was FASTA [version 3.4t11 Apr 17, 2002]