FASTA searches a protein or DNA sequence data bank
 version 3.4t11 Apr 17, 2002
Please cite:
 W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

 ../query/mKIAA1822.ptfa, 636 aa
 vs ./tmplib.26680 library

1768381 residues in  2168 sequences
  Expectation_n fit: rho(ln(x))= 8.5593+/-0.00672; mu= -1.6754+/- 0.443
 mean_var=292.4046+/-69.829, 0's: 0 Z-trim: 1  B-trim: 0 in 0/36
 Lambda= 0.0750

FASTA (3.45 Mar 2002) function [optimized, BL50 matrix (15:-5)] ktup: 2
 join: 38, opt: 26, open/ext: -10/-2, width:  16
The best scores are:                                       opt bits E(2168)
mFLJ00268  ( 241 res)   mtj02475                   ( 241)  237   39 0.00069


>>mFLJ00268  ( 241 res)   mtj02475                        (241 aa)
 initn: 259 init1: 171 opt: 237  Z-score: 162.1  bits: 38.8 E(): 0.00069
Smith-Waterman score: 237;  40.336% identity (42.105% ungapped) in 119 aa overlap (513-630:117-231)

            490       500       510       520       530       540  
mKIAA1 AAPPAPTPRPTKPARPTRRPGARKGGGRRRGRPSTAVPEPENGSVRLVRPAGLSPGRGRV
                                     :  ..:.    . ..:: .  : :   :::
mFLJ00 IRTDVFHCVGTEPHLLSCPTSTLGAQACALGNSASALCSGLQDALRLRE--GQSHCDGRV
         90       100       110       120       130         140    

            550       560       570       580       590       600  
mKIAA1 EVFIGGRWGTVCDDAWDTKAAAVVCRQLGFAHAVRAAKRAEFGEGRALRILLDDVRCAGS
       :::. : :: : :.::: . ::::::::: ..:  :      :. ... . :. :.: ::
mFLJ00 EVFLDGTWGRVLDSAWDLRDAAVVCRQLGCGEAQLAYDAPAPGH-KTIPVGLSLVHCLGS
          150       160       170       180        190       200   

             610       620       630          
mKIAA1 ERNLLEC-AHAGVGTHNCKHDEDAGVECSHQDPNL    
       : .: .: . :.. .:     .:::: ::          
mFLJ00 ETHLTQCNVSASLLVHAGTL-RDAGVVCSGECEVSTCPP
           210       220        230       240 




636 residues in 1 query   sequences
1768381 residues in 2168 library sequences
 Scomplib [34t11]
 start: Mon Mar 27 10:53:53 2006 done: Mon Mar 27 10:53:54 2006
 Scan time:  0.780 Display time:  0.010

Function used was FASTA [version 3.4t11 Apr 17, 2002]