FASTA searches a protein or DNA sequence data bank version 3.4t11 Apr 17, 2002 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 ../query/mKIAA4215.ptfa, 703 aa vs ./tmplib.26680 library 1768314 residues in 2168 sequences Expectation_n fit: rho(ln(x))= 4.5754+/-0.00409; mu= 16.7717+/- 0.274 mean_var=86.1050+/-20.235, 0's: 0 Z-trim: 3 B-trim: 0 in 0/36 Lambda= 0.1382 FASTA (3.45 Mar 2002) function [optimized, BL50 matrix (15:-5)] ktup: 2 join: 38, opt: 26, open/ext: -10/-2, width: 16 The best scores are: opt bits E(2168) mKIAA1567 ( 668 res) mid08086 ( 668) 1425 295 2.2e-80 >>mKIAA1567 ( 668 res) mid08086 (668 aa) initn: 2694 init1: 1349 opt: 1425 Z-score: 1535.5 bits: 294.5 E(): 2.2e-80 Smith-Waterman score: 3609; 74.965% identity (82.083% ungapped) in 715 aa overlap (1-703:4-668) 10 20 30 40 50 mKIAA4 ETIQALDVVMRHLPSMRYTPVGRSFFTASEGCSNPLGGGREVWFGFHQSVRPSLWKM ...:::::. ::::::::::::::::. :: .::::::::::::::::::..:.: mKIAA1 VPDDSVQALDVITRHLPSMRYTPVGRSFFSPPEGYYHPLGGGREVWFGFHQSVRPAMWNM 10 20 30 40 50 60 60 70 80 90 100 110 mKIAA4 MLNIDVSATAFYKAQPVIEFVCEVLDFKSIEEQQKPLTDSQRVKFTKEIKGLKVEITHCG ::::::::::::.:::.:::.:::::...:.:: :::::::::::::::.:::::.:::: mKIAA1 MLNIDVSATAFYRAQPIIEFMCEVLDIQNINEQTKPLTDSQRVKFTKEIRGLKVEVTHCG 70 80 90 100 110 120 120 130 140 150 160 170 mKIAA4 QMKRKYRVCNVTRRPASHQTFPLQQESGQTVECTVAQYFKDRHKLVLRYPHLPCLQVGQE :::::::::::::::::::::::: :.::..:::::::::....: :..::::::::::: mKIAA1 QMKRKYRVCNVTRRPASHQTFPLQLENGQAMECTVAQYFKQKYSLQLKHPHLPCLQVGQE 130 140 150 160 170 180 180 190 200 210 220 230 mKIAA4 QKHTYLPLEVCNIVAGQRCIKKLTDNQTSTMIRATARSAPDRQEEISKLMRSASF--NTD ::::::::::::::::::::::::::::::::.::::::::::::::.:..: :. . : mKIAA1 QKHTYLPLEVCNIVAGQRCIKKLTDNQTSTMIKATARSAPDRQEEISRLVKSNSMVGGPD 190 200 210 220 230 240 240 250 260 270 280 290 mKIAA4 PYVREFGIMVKDEMTDVTGRVLQPPSILYGGRNKAIATPVQGVWDMRNKQFHTGIEIKVW ::..::::.:..::: mKIAA1 PYLKEFGIVVHNEMT--------------------------------------------- 250 300 310 320 330 340 350 mKIAA4 AIACFAPQRQCTEVHLKSFTEQLRKISRDAGMPIQGQPCFCKYAQGADSVEPMFRHLKNT :: . :: .. :::.::::::.::::::::::::::::::::::::::.::: : mKIAA1 ---CF--RLQCCSMEAGSFTDQLRKISKDAGMPIQGQPCFCKYAQGADSVEPMFKHLKMT 260 270 280 290 300 310 360 370 380 390 400 410 mKIAA4 YAGLQLVVVILPGKTPVYAEVKRVGDTVLGMATQCVQMKNVQRTTPQTLSNLCLKINVKL :.::::.::::::::::::::::::::.:::::::::.::: .:.::::::::::.:.:: mKIAA1 YVGLQLIVVILPGKTPVYAEVKRVGDTLLGMATQCVQVKNVVKTSPQTLSNLCLKMNAKL 320 330 340 350 360 370 420 430 440 450 460 470 mKIAA4 GGVNNILLPQGRPPVFQQPVIFLGADVTHPPAGDGKKPSIAAVVGSMDAHPNRYCATVRV ::.::.:.:. :: ::::::::::::::::::::::::::::::::::.::.:::::::: mKIAA1 GGINNVLVPHQRPSVFQQPVIFLGADVTHPPAGDGKKPSIAAVVGSMDGHPSRYCATVRV 380 390 400 410 420 430 480 490 500 510 520 mKIAA4 QQHRQEI----------IQDLAAMVRELLIQFYKSTRFKPTRIIFYRDGVSEGQFQQVLH : :::: .:::..:. ::::::::::::::::::.:: ::::::..:: mKIAA1 QTSRQEITQELLYSQEVVQDLTSMAWELLIQFYKSTRFKPTRIIYYRGGVSEGQMKQVAW 440 450 460 470 480 490 530 540 550 560 570 580 mKIAA4 HELLAIREACIKLEKDYQPGITFIVVQKRHHTRLFCTDKNERVGKSGNIPAGTTVDTKIT ::.:::.:::.::.::.::::.:::::::::::::.:: ::::::::.:::::::. .: mKIAA1 PELIAIRKACISLEEDYRPGITYIVVQKRHHTRLFCADKMERVGKSGNVPAGTTVDSTVT 500 510 520 530 540 550 590 600 610 620 630 640 mKIAA4 HPTEFDFYLCSHAGIQGTSRPSHYHVLWDDNRFSSDELQILTYQLCHTYVRCTRSVSIPA ::.:::::::::::::::::::::.:::::: :..::::.:::::::::::::::::::: mKIAA1 HPSEFDFYLCSHAGIQGTSRPSHYQVLWDDNCFTADELQLLTYQLCHTYVRCTRSVSIPA 560 570 580 590 600 610 650 660 670 680 690 700 mKIAA4 PAYYAHLVAFRARYHLVDKEHDSAEGSHTSGQSNGRDHQALAKAVQVHQDTLRTMYFA :::::.:::::::::::::.::::::::.:::::::: ::::::::.:.:: .::::: mKIAA1 PAYYARLVAFRARYHLVDKDHDSAEGSHVSGQSNGRDPQALAKAVQIHHDTQHTMYFA 620 630 640 650 660 703 residues in 1 query sequences 1768314 residues in 2168 library sequences Scomplib [34t11] start: Mon Mar 27 11:05:23 2006 done: Mon Mar 27 11:05:24 2006 Scan time: 0.820 Display time: 0.050 Function used was FASTA [version 3.4t11 Apr 17, 2002]