FASTA searches a protein or DNA sequence data bank
 version 3.4t11 Apr 17, 2002
Please cite:
 W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

 ../query/mKIAA0249.ptfa, 115 aa
 vs ./tmplib.26680 library

1768902 residues in  2168 sequences
  Expectation_n fit: rho(ln(x))= 3.9307+/-0.00388; mu= 13.0631+/- 0.260
 mean_var=67.1726+/-14.926, 0's: 0 Z-trim: 3  B-trim: 0 in 0/36
 Lambda= 0.1565

FASTA (3.45 Mar 2002) function [optimized, BL50 matrix (15:-5)] ktup: 2
 join: 36, opt: 24, open/ext: -10/-2, width:  16
The best scores are:                                       opt bits E(2168)
mKIAA0188  ( 684 res)   mtj00866                   ( 684)  512  124 8.3e-30
mKIAA4023  ( 888 res)   msh07169                   ( 888)  489  119 3.6e-28


>>mKIAA0188  ( 684 res)   mtj00866                        (684 aa)
 initn: 510 init1: 444 opt: 512  Z-score: 627.5  bits: 123.9 E(): 8.3e-30
Smith-Waterman score: 512;  61.739% identity (62.281% ungapped) in 115 aa overlap (1-114:565-679)

                                             10        20        30
mKIAA0                               KPEKFKIECLNDIKNLFAPSRQPFYAAFGN
                                     ::::::..::.:::::: :. .::::::::
mKIAA0 NERGTVLPQGPLLLSPSSLFSALHREVIEKKPEKFKVQCLTDIKNLFFPNTEPFYAAFGN
          540       550       560       570       580       590    

               40        50        60        70        80        90
mKIAA0 RPNDVYAYTQVGVPDCRIFTVNPKGELIQERTKGNKSSYHRLSELVEHVFPLLSKEQNSA
       :: :::.: :::.   :::::::::::.::..: : ::: :: :.:.::::::.. ..  
mKIAA0 RPADVYSYKQVGLSLNRIFTVNPKGELVQEHAKTNISSYVRLCEVVDHVFPLLKRSHSCD
          600       610       620       630       640       650    

               100       110         
mKIAA0 FPCPE-FSSFCYWRDPIPDLDLDDLA    
       ::: . ::.: .::.:.: .. .:.     
mKIAA0 FPCSDTFSNFTFWREPLPPFENQDMHSASA
          660       670       680    

>>mKIAA4023  ( 888 res)   msh07169                        (888 aa)
 initn: 489 init1: 489 opt: 489  Z-score: 598.1  bits: 118.9 E(): 3.6e-28
Smith-Waterman score: 489;  58.261% identity (58.261% ungapped) in 115 aa overlap (1-115:774-888)

                                             10        20        30
mKIAA0                               KPEKFKIECLNDIKNLFAPSRQPFYAAFGN
                                     ::: ::. ::.::..:: :.::::.:::::
mKIAA4 SEHGCGLPKGPILLSPSSLFSALHREVIEKKPEVFKVACLSDIQQLFLPQRQPFHAAFGN
           750       760       770       780       790       800   

               40        50        60        70        80        90
mKIAA0 RPNDVYAYTQVGVPDCRIFTVNPKGELIQERTKGNKSSYHRLSELVEHVFPLLSKEQNSA
       :::::.:: :::.:. :::::::.::::::  :..::.:.::.:.:: .:: . .  .. 
mKIAA4 RPNDVFAYRQVGLPESRIFTVNPRGELIQELIKSHKSTYQRLGEVVELLFPPVVRGPSTD
           810       820       830       840       850       860   

              100       110     
mKIAA0 FPCPEFSSFCYWRDPIPDLDLDDLA
       .  ::.:.. ::: :.: .:.. ::
mKIAA4 LASPEYSNLSYWRKPLPYVDFEALA
           870       880        




115 residues in 1 query   sequences
1768902 residues in 2168 library sequences
 Scomplib [34t11]
 start: Mon Mar 27 10:15:48 2006 done: Mon Mar 27 10:15:48 2006
 Scan time:  0.300 Display time:  0.010

Function used was FASTA [version 3.4t11 Apr 17, 2002]