FASTA searches a protein or DNA sequence data bank version 3.4t11 Apr 17, 2002 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 ../query/mKIAA1453.ptfa, 974 aa vs ./tmplib.26680 library 1768043 residues in 2168 sequences Expectation_n fit: rho(ln(x))= 12.3060+/-0.00817; mu= -19.0646+/- 0.537 mean_var=458.3783+/-113.664, 0's: 0 Z-trim: 7 B-trim: 0 in 0/36 Lambda= 0.0599 FASTA (3.45 Mar 2002) function [optimized, BL50 matrix (15:-5)] ktup: 2 join: 39, opt: 27, open/ext: -10/-2, width: 16 The best scores are: opt bits E(2168) mKIAA4202 ( 520 res) mpj00623 ( 520) 353 45 2.6e-05 mKIAA1063 ( 570 res) mfj05092 ( 570) 349 45 3.5e-05 >>mKIAA4202 ( 520 res) mpj00623 (520 aa) initn: 186 init1: 94 opt: 353 Z-score: 187.8 bits: 45.3 E(): 2.6e-05 Smith-Waterman score: 353; 26.962% identity (29.699% ungapped) in 293 aa overlap (160-436:126-407) 130 140 150 160 170 180 mKIAA1 GGDGVPAPQKVLFPVERLSLRWERVFRVGAGLHNLGNTCFLNSTIQCLTYTPPL--ANYL :: ::: ::..:. .: . : : :: mKIAA4 EHIWLGEIDENSFHSIDDPNCERRKKNSFVGLTNLGATCYVNTFLQVWFLNLELRQALYL 100 110 120 130 140 150 190 200 210 220 230 mKIAA1 LSKEHARSCHQGGF--------CMLCLMQNHMVQAFANSGNA-IKPVSFIRDLKKIARHF . . . :. .: ... . ::. : : .:.. : . mKIAA4 CPSTCSDYTKGDGIHGGKDYEPQTICEHLQYLFALLQNSNRRYIDPSGFVKALG-----L 160 170 180 190 200 210 240 250 260 270 280 290 mKIAA1 RFGNQEDAHEFLRYTIDAMQKACLNGYAKLDRQTQATTLVHQIFGGYLRSRVKCSVCKSV :.:.::.:: . .. .. . .: ... .. ..:.: : : . :. : mKIAA4 DTGQQQDAQEFSKLFMSLLE----DTLSK-QKNPDVRNVVQQQFCGEYAYVTVCNQCGRE 220 230 240 250 260 300 310 320 330 340 350 mKIAA1 SDTYDPYLDIALEIRQAANIVRALELFVKSDVLSGENAYMCAKCKKKVPASKRFTIHRTS : . . .. :.:. ... . :.: . : :.: :.: .:..: :.... . mKIAA4 SKLVSKFYELELNIQGHKQLTDCISEFLKEERLEGDNRYFCENCQSKQNATRKIRLLSLP 270 280 290 300 310 320 360 370 380 390 400 410 mKIAA1 NVLTLSLKRFA-NFSGG---KITKDVGYPEFLNIRPYMSQSSGDPVMYGLYAVLVHSGYS .:.:.: ::. . . : :.. .:. : :...::. ...:. : : : :::.: : : mKIAA4 CTLNLQLMRFVFDRQTGHKKKLNAYIGFSESLDMEPYVEHKGGSFV-YELSAVLIHRGVS 330 340 350 360 370 380 420 430 440 450 460 470 mKIAA1 CHAGHYYCYVK-ASNGQWYQMNDSLVHSSNVKVVLNQQAYVLFYLRIPGSKKSPEGPVSR ..::: .:: ..:.::..:: mKIAA4 AYSGHYIAHVKDPQSGEWYKFNDEDIEKMEGKKLQLGIEEDLEPSKSQTRKPKCGKGTHC 390 400 410 420 430 440 >>mKIAA1063 ( 570 res) mfj05092 (570 aa) initn: 463 init1: 229 opt: 349 Z-score: 185.4 bits: 45.0 E(): 3.5e-05 Smith-Waterman score: 504; 28.571% identity (33.108% ungapped) in 343 aa overlap (160-457:222-562) 130 140 150 160 170 180 mKIAA1 GGDGVPAPQKVLFPVERLSLRWERVFRVGAGLHNLGNTCFLNSTIQCLTYTPPLANYLLS :: :::::::.: .: ::.:: : ...:: mKIAA1 TWEPTKRELELLKHNPKRRKITSNCTIGLRGLINLGNTCFMNCIVQALTHTPLLRDFFLS 200 210 220 230 240 250 190 200 210 220 230 240 mKIAA1 KEHARSCHQGGFCMLCLMQNHMVQAFANSGNAIKPVSFIRDLKKIARHFRFGNQEDAHEF .: .. . :..: :.. . . ... . : .... . :::. .:.::::: mKIAA1 DRHRCEMQSPSSCLVCEMSSLFQEFYSGHRSPHIPYKLLHLVWTHARHLAGYEQQDAHEF 260 270 280 290 300 310 250 260 270 280 290 300 mKIAA1 LRYTIDAMQKACL---NGYAKLDRQTQATTLVHQIFGGYLRSRVKCSVCKSVSDTYDPYL : ..:.... : :: : . .. . .. ::: : :.: : :.::..:: : ::. mKIAA1 LIAALDVLHRHCKGDDNG-KKANNPNHCNCIIDQIFTGGLQSDVTCQVCHGVSTTIDPFW 320 330 340 350 360 370 310 320 330 340 mKIAA1 DIALEIRQAAN-------------------------IVRALELFVKSDVLSGENAYMCAK ::.:.. ... .. :. :.. . :.. :. mKIAA1 DISLDLPGSSTPFWPLSPGSEGSVVNGESHASGTTTLTDCLRRFTRPEHLGSSAKIKCSG 380 390 400 410 420 430 350 360 370 380 390 mKIAA1 CKKKVPASKRFTIHRTSNVLTLSLKRFANFSG--GKITKDVGYPEFLNIRPYMSQS---- :.. ..:..:... : . :::: . . ::: :..: :.. :.:..: mKIAA1 CHSYQESTKQLTMKKLPIVACFHLKRFEHSAKLRRKITTYVSFPLELDMTPFMASSKESR 440 450 460 470 480 490 400 410 420 430 440 mKIAA1 -SGD---PV-------MYGLYAVLVHSGYSCHAGHYYCYVKASNGQWYQMNDSLVHSSNV .:. :. :.:.::. :.: . ..::: ... . ::.. .:... .... mKIAA1 MNGQYQQPLDSLNNDNKYSLFAVVNHQG-TLESGHYTSFIRQHKDQWFKCDDAIITKASI 500 510 520 530 540 450 460 470 480 490 500 mKIAA1 KVVLNQQAYVLFYLRIPGSKKSPEGPVSRVGATLPSRPKVVPEHPKKSPGNGVVPSPLMA : ::....:.::: mKIAA1 KDVLDSEGYLLFYHKQFLEYE 550 560 570 974 residues in 1 query sequences 1768043 residues in 2168 library sequences Scomplib [34t11] start: Mon Mar 27 10:45:21 2006 done: Mon Mar 27 10:45:22 2006 Scan time: 1.040 Display time: 0.040 Function used was FASTA [version 3.4t11 Apr 17, 2002]