FASTA searches a protein or DNA sequence data bank version 3.4t11 Apr 17, 2002 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 ../query/mKIAA0364.ptfa, 1026 aa vs ./tmplib.26680 library 1767991 residues in 2168 sequences Expectation_n fit: rho(ln(x))= 4.2861+/-0.00406; mu= 20.5407+/- 0.272 mean_var=87.7094+/-20.617, 0's: 0 Z-trim: 5 B-trim: 0 in 0/36 Lambda= 0.1369 FASTA (3.45 Mar 2002) function [optimized, BL50 matrix (15:-5)] ktup: 2 join: 39, opt: 27, open/ext: -10/-2, width: 16 The best scores are: opt bits E(2168) mKIAA3024 ( 898 res) mfj07190 ( 898) 164 43 0.00019 mKIAA0657 ( 782 res) mbg05167 ( 782) 163 43 0.0002 mKIAA3016 ( 714 res) mph00541 ( 714) 140 38 0.0045 >>mKIAA3024 ( 898 res) mfj07190 (898 aa) initn: 106 init1: 55 opt: 164 Z-score: 172.1 bits: 43.2 E(): 0.00019 Smith-Waterman score: 201; 21.739% identity (25.000% ungapped) in 437 aa overlap (70-466:29-448) 40 50 60 70 80 mKIAA0 APWENITLWCKSPSRVSSKFLLLKDNSQMTWIRPPYKTFQ-----VS-----FFIGALTE :: : ..: :: ..:. . . mKIAA3 RSTVSVRRGQGMVLLCGPPPHSGELSYAWIFNEYPSYQDNRRFVSQETGNLYIAKVEK 10 20 30 40 50 90 100 110 120 130 140 mKIAA0 SNTGLYRCCYWKEKGWSK---PSKILELEAPGQLPK--PIFWIQ-AET-PPLPGCNVNIF :..: : : . : : : :. : . . : . .: :: : : .:.. mKIAA3 SDVGNYTCVVTNTVTNHKVLGPPTPLILRNDGVMGEYEPKIEVQFPETVPAEKGTTVKLE 60 70 80 90 100 110 150 160 170 180 190 200 mKIAA0 CHGWLQDLVFMLFKEGYTEPVDYQVPTG-TMAIFSIDNLAPENEGVYICRTHIQMLPTLW : . . . .:.... .:. .. . .:. : :. :. : : : .. mKIAA3 CFALGNPVPTILWRRADGKPIARKARRHKSNGILEIPNFQQEDAGSYECVAEN------- 120 130 140 150 160 170 210 220 230 240 250 mKIAA0 SEPSNPLKLVVAGLYPKPTLTAHPGPI-LAPGESLSLRCQGPIYGMTFALMR-LEDLKKS :. .: : .. .: .:. . . : .: ::. .:.. : .: :.. mKIAA3 SRGKNVAKGQLT-FYAQPNWVQIINDIHVAMEESVFWECKAN--GRPKPTYRWLKNGDPL 180 190 200 210 220 260 270 280 290 300 310 mKIAA0 FYHKKPIKNEAYFYFQDLKIQDTGHYLCFYYDGSYRGSLLS--DILKIWVTDTFPKTWLL . . . ... . . ....:.: : : . .: ..: .. : . : .: : mKIAA3 LTRDRIQIEQGTLNITIVNLSDAGMYQCVAENK--HGVIFSSAELSVIAESPDFSRT--L 230 240 250 260 270 280 320 330 340 350 360 370 mKIAA0 VQPSPVIQMGQNVSLRCGGLMDGVGLALYKKGEEKPLQFLDASSNTGNNSFFLKNVTYRD .. ....: .: ..: . . ..::.: :. . . . .... . ::: : mKIAA3 LKRVTLVKVGGEVVIECKPKASPRPVYTWRKGREI-LRENERITISEDGNLRIINVTKSD 290 300 310 320 330 340 380 390 400 410 420 430 mKIAA0 AGIYSC---HYYLTWKTSIKMATYNTVELMVVAWPSSV-FKVGKTITLQCRVSHP-VLEF :: :.: ... : ... .. . . ...:: :::. ::..:.: :.:.: :.. mKIAA3 AGSYTCIATNHFGTASSTGNVIVKDPTKVMVP--PSSMDVTVGESIVLPCQVTHDHSLDI 350 360 370 380 390 400 440 450 460 470 mKIAA0 SLEWEERTTFQKFSVDGD-------------FLITDIEGQGTGTYSCSYRIEAHPNTWSH . : . :. ::: ..: .:. . .: : : mKIAA3 VFTWTFNGHLIDFDKDGDHFERVGGQDSAGDLMIRNIQLKHAGKYVCMVQTSVDKLSVAA 410 420 430 440 450 460 480 490 500 510 520 530 mKIAA0 RSKPLKLVGPAGFLTWNSILNEAVRVSLTMQLASLLLLVVWIRWKCRRLRLREAWLLGTA mKIAA3 DLIVRGPPGPPEAVTIDEITDTTAQLSWRPGPDNHSPITMYVIQARTPFSVGWQAVNTVP 470 480 490 500 510 520 >>mKIAA0657 ( 782 res) mbg05167 (782 aa) initn: 104 init1: 65 opt: 163 Z-score: 171.6 bits: 43.0 E(): 0.0002 Smith-Waterman score: 192; 24.314% identity (27.679% ungapped) in 255 aa overlap (681-916:253-495) 660 670 680 690 700 mKIAA0 SEPSEALELVGTDILPKPVISASLPIRGQELQIRCKGWLEGLGFALYKKGEQEPVQ---Q ...::. : :: : . :. : mKIAA0 FFTVTVTAPPERIVHPAARSLDLQFGAPGHVELRCEVAPAGSQVRWYKDGLEVEVSDALQ 230 240 250 260 270 280 710 720 730 740 750 760 mKIAA0 LGAVGREAFFTIQRMEDKDEGNYSCRTHTEMQPFKWSEPSEPLELVIKEMYPKPFFKTWA ::: : .:. . . .: :.: :.:. : :. : :.... : :.:. mKIAA0 LGAEGPARTLTLPHAQPEDAGEYVCETRDEAVTFNVSLAELPVQFLAPEAAPNPL----- 290 300 310 320 330 770 780 790 800 810 820 mKIAA0 SPVVTPGSRVTFNCSTSHEHMSFILYKDGNEIASSDLAWGNPGGSTAHFLIISVGIGDGG :.:: :...: :. . . ..:. . ... : . : .. .. : mKIAA0 --CVVPGEPVVLSCELSRASAQVFWSHNGSPVQQGEGLELRAEGPRRILCIQAADLAHTG 340 350 360 370 380 390 830 840 850 860 870 mKIAA0 NYSCRY--------YDFSIW-SEPSNPVELVVTEFYPKPTLLAQPGPGKDITLQCRGPLP :.:. .:.. .:: ::..:. : .. :: :. : . : mKIAA0 VYTCQSGASPGAPSLSFNVQVAEP--PVRVVAPE---AAQTSVRSTPGGDLELVVHLSRP 400 410 420 430 440 450 880 890 900 910 920 930 mKIAA0 GVEFVLEHDGEE-APQ---QFSEDGDFVIDNLEG--KG-IGNYSCSYRLQAYPDIWSEPS :. .:::. : : :. . : . ..: .: :.: :. mKIAA0 GTPVRWYKDGERLASQGRVQLEQAGARQVLRVRGARRGDAGEYLCDAPQDSRIFIVSVEG 460 470 480 490 500 510 940 950 960 970 980 990 mKIAA0 DTLELVGAAGPVAQECTVGNIVRSTLIVVVVVALGIVLAVEWKKWPRLRTRGSETDGRDQ mKIAA0 NHAPLIPTKTTSHPLDPFHLLYLTQLLSMVPTNAFMTVTVRGHLPFFQHPSIAGCIAQWI 520 530 540 550 560 570 >>mKIAA3016 ( 714 res) mph00541 (714 aa) initn: 110 init1: 67 opt: 140 Z-score: 147.5 bits: 38.4 E(): 0.0045 Smith-Waterman score: 140; 22.628% identity (26.050% ungapped) in 274 aa overlap (216-466:104-364) 190 200 210 220 230 240 mKIAA0 GVYICRTHIQMLPTLWSEPSNPLKLVVAGLYPKPTLTAHPGPILA-PGESLSLRCQGPIY .::: .:..: : : ..:. :.. mKIAA3 SFVNASCAHPQLLKGRSIFTVSPDGFVCDDFPKPQITVQPETQSAIKGSDVSFTCSAASS 80 90 100 110 120 130 250 260 270 280 290 mKIAA0 G---MTFALMRLEDLKKSFYHKKPIKNEAYFYFQD---LKIQDTGHYLCF---YYDGSYR . :::: . .. .. ..: :.. : ... . :.: : .. .:: mKIAA3 SDSPMTFAWKKDNEALQD----AEMENYAHLRAQGGELMEFTSEGKYQCVISNHFGSSYS 140 150 160 170 180 300 310 320 330 340 350 mKIAA0 GSLLSDILKIWVTDTFPKTWLLVQPSPVIQMGQNVSLRCGGLMDGVGLALYKK--GEEKP .. : : . .: :: . . .:. : . :.:... . ..: : . : mKIAA3 ---VKAKLTINMLPSFTKTPMDL----TIRAGAMARLECAAVGHPAPQIAWQKDGGTDFP 190 200 210 220 230 240 360 370 380 390 400 mKIAA0 L-QFLDASSNTGNNSFFLKNVTYRDAGIYSCHYYLTWKTSIKMATYNTVELMVVAWP--- . .. ::. .: .: :.::: . . :: ...: : mKIAA3 AARERRMHVMPEDDVFFIVDVKIEDIGVYSCTAQNSAGSVSANATLTVLETPSFLRPLLD 250 260 270 280 290 300 410 420 430 440 450 460 mKIAA0 SSVFKVGKTITLQCRVSHPVLEFSLEWEER-----TTFQKFSVDGD--FLITDIEGQGTG .: : :.: .::: .. :.: . .: ..: . :. ..:.: . . .: mKIAA3 RTVTK-GETAVLQC-IAGGSPPPRLNWTKDDSPLVVTERHFFAAGNQLLIIVDSDVSDAG 310 320 330 340 350 360 470 480 490 500 510 520 mKIAA0 TYSCSYRIEAHPNTWSHRSKPLKLVGPAGFLTWNSILNEAVRVSLTMQLASLLLLVVWIR :.: mKIAA3 KYTCEMSNTLGTERGNVRLSVIPTPTCDSPHMTAPSLDGDGWATVGVVIIAVVCCVVGTS 370 380 390 400 410 420 1026 residues in 1 query sequences 1767991 residues in 2168 library sequences Scomplib [34t11] start: Mon Mar 27 10:18:56 2006 done: Mon Mar 27 10:18:57 2006 Scan time: 1.010 Display time: 0.100 Function used was FASTA [version 3.4t11 Apr 17, 2002]