FASTA searches a protein or DNA sequence data bank version 3.4t11 Apr 17, 2002 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 ../query/mKIAA1557.ptfa, 1161 aa vs ./tmplib.26680 library 1767856 residues in 2168 sequences Expectation_n fit: rho(ln(x))= 12.7018+/-0.00902; mu= -20.4638+/- 0.594 mean_var=524.6194+/-127.290, 0's: 0 Z-trim: 16 B-trim: 0 in 0/36 Lambda= 0.0560 FASTA (3.45 Mar 2002) function [optimized, BL50 matrix (15:-5)] ktup: 2 join: 39, opt: 27, open/ext: -10/-2, width: 16 The best scores are: opt bits E(2168) mFLJ00386 ( 769 res) mbe05021 ( 769) 295 39 0.0029 >>mFLJ00386 ( 769 res) mbe05021 (769 aa) initn: 269 init1: 148 opt: 295 Z-score: 150.9 bits: 39.3 E(): 0.0029 Smith-Waterman score: 315; 26.170% identity (30.597% ungapped) in 470 aa overlap (52-504:89-507) 30 40 50 60 70 mKIAA1 SVHTHQQQNSPVTVIQNKAPIPCEVVKATVIQNSVPQTAV--PVSI--SVGGAPAQNSVG :.:. :..: :.. :. :.:. ...: mFLJ00 KDMESHVFLKAKTRDEYLSLVARLIIHFRDIHNKKSQASVSDPMNALQSLTGGPTPGAAG 60 70 80 90 100 110 80 90 100 110 120 130 mKIAA1 QNHSAGPQPVTVVNSQTLLHHPSVMPQPSPLHTVVP----GQVPSGTPVTVIQQTVPQSR : : .: . ..: :: :: : :..: : ..:.. ..::.. mFLJ00 ----IGMPPRGPGQSLGGMGGLGAMGQPLPLSGQPPPGTSGMAPHG--MAVVSTATPQTQ 120 130 140 150 160 170 140 150 160 170 180 190 mKIAA1 MFGRVQSIPACTSTVSQGQQLITTSPQPMHTSSQQTAAGSQPQDTVIIAPPQYVTTSASN . ..:.. ...: :: : .. .:: :: .: :. : . .: mFLJ00 L--QLQQV-----ALQQQQQ-----QQQQQQFQQQQAALQQQQQQQQQQQQQQQFQAQQN 180 190 200 210 220 200 210 220 230 240 250 mKIAA1 IVSATSVQNFQVATGQVVTIAGVPSPQPSRVGFQNIAPKPLPSQQVSPSVVQQPIQQPQQ .. :.::... : . : . ... . . .:: ..: .:: :: mFLJ00 AMQ----QQFQAVVQQQQLQQ--QQQQQHLIKLHHQSQQQQIQQQQLQRMAQLQLQQQQQ 230 240 250 260 270 260 270 280 290 300 310 mKIAA1 PAQQSVVIVSQPAQQGQAYAPAIHQIVLANPAALPAGQTVQLTGQPNITPSSSPSPVPPT ::... .. : :: :...: ::: : :: . : . . : . mFLJ00 QQQQQALQAQPPMQQ-----PSMQQPQPPPSQALPQ-QLSQLHHPQHHQPPPQAQQSPIA 280 290 300 310 320 320 330 340 350 360 mKIAA1 NNQVPTA--MSSSSTLQSQG---PPPTVSQMLSVKRQQQQQHSPAAPAQQVQVQVQQPQQ .:: : .:.:. : ::. : : :: . .:: . .:: ::: : :: mFLJ00 QNQPPQIPPQSQSQPLVSQAQALPGP----MLYAAQQQLKFVRAPMVVQQPQVQ-PQVQQ 330 340 350 360 370 380 370 380 390 400 410 420 mKIAA1 VQVQVQPQ---QPSAGVGQPAPNESSLIKQLLLPKRGPSTPGGKLILPAPQIPPPNNARA :: ::::: : . .. . ::. . ..: : . .:: .. : . :::. mFLJ00 VQPQVQPQAAVQAAQSAQMVAPGVQ--VSQSSLTMLSSPSPGQQVQTPQSMPPPPQ---- 390 400 410 420 430 430 440 450 460 470 480 mKIAA1 PSPQVVYQVANNQAAGFGVQGQTPAQQLLVGQQNVQLVQSAMPPAGGVQTVPISNLQILP :::: : .: ..: .:. . .. . . : :: . : :. . . : mFLJ00 PSPQPGSQPNSNVSSG-----PAPSPSSFLPSPSPQPSQSPVT-ARTPQNFSVPS----P 440 450 460 470 480 490 500 510 520 530 540 mKIAA1 GPLISN-SPATIFQGTSGNQVTITVVPNTSFATATVSQGNAAQLIAPAGLSMSGAQASAG ::: . .:..... ....:. mFLJ00 GPLNTPVNPSSVMSPAGSSQAEEQQYLDKLKQLSKYIEPLRRMINKIDKNEDRKKDLSKM 490 500 510 520 530 540 1161 residues in 1 query sequences 1767856 residues in 2168 library sequences Scomplib [34t11] start: Mon Mar 27 10:48:05 2006 done: Mon Mar 27 10:48:06 2006 Scan time: 1.130 Display time: 0.040 Function used was FASTA [version 3.4t11 Apr 17, 2002]