FASTA searches a protein or DNA sequence data bank version 3.4t11 Apr 17, 2002 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 ../query/mKIAA4121.ptfa, 391 aa vs ./tmplib.26680 library 1768626 residues in 2168 sequences Expectation_n fit: rho(ln(x))= 12.2988+/-0.00685; mu= -20.7756+/- 0.447 mean_var=523.2530+/-124.953, 0's: 0 Z-trim: 13 B-trim: 0 in 0/36 Lambda= 0.0561 FASTA (3.45 Mar 2002) function [optimized, BL50 matrix (15:-5)] ktup: 2 join: 37, opt: 25, open/ext: -10/-2, width: 16 The best scores are: opt bits E(2168) mKIAA0693 ( 407 res) mfj10262 ( 407) 885 85 6.7e-18 mFLJ00201 ( 640 res) mpm06260 ( 640) 312 39 0.00083 mKIAA1172 ( 1200 res) mfj66157 (1200) 313 40 0.0012 >>mKIAA0693 ( 407 res) mfj10262 (407 aa) initn: 1105 init1: 560 opt: 885 Z-score: 413.7 bits: 85.4 E(): 6.7e-18 Smith-Waterman score: 1501; 57.279% identity (64.865% ungapped) in 419 aa overlap (5-391:6-407) 10 20 30 40 50 mKIAA4 LGGNMSVAFAAPRQRGKGEITPAAIQKMLDENNHLIQCIMDYQNKGKASECSQYQQILH ::::::. : :::::.: .::::::::.::::::.:::.:::..::.::::::: mKIAA0 VRATTMSVAFASARPRGKGEVTQQTIQKMLDENHHLIQCILDYQSKGKTAECTQYQQILH 10 20 30 40 50 60 60 70 80 90 100 110 mKIAA4 TNLVYLATIADSNQNMQSLLPAPPTQTMPMGPGGMSQSGPPPPPRSHNMPSDGMVGGGPP :::::::::::::::::::::::::.: .:::..:::: . .. :: . : :: mKIAA0 RNLVYLATIADSNQNMQSLLPAPPTQNMNLGPGALSQSGSSQGLHPQGSLSDTVSTGLPP 70 80 90 100 110 120 120 130 140 150 160 170 mKIAA4 APHMQNQMNGQMPGPNHMPMQGPGPSQLSMTNSSMNMPSSSHGSMGGYNHSVPSSQSMPV : ::.:... ::::. :: . : : : ::.. .:.::. ::.:: :.:::.:. mKIAA0 ASLMQGQIGN---GPNHVSMQQTAQSTLPTT--SMSLSGSGHGTGPGYSHSGPTSQSVPM 130 140 150 160 170 180 190 200 210 220 230 mKIAA4 QNQMTMSQGQPMGNYGPRPNMNMQPNQGPMMHQQPPSQQYNMPPGGAQHYQGQQAPMGLM :.: ..: :: : :.::: : ::::: ...:: ::.:::::: ::...: mKIAA0 QGQGAIS------NYVSRTNINMQSNPVSMMHQQAATSHYNSAQGGSQHYQGQ-APIAMM 180 190 200 210 220 240 250 260 270 280 290 mKIAA4 GQVNQGSHMMGQRQMPPYRPPQQGPPQQYSGQEDYYGDQYSHGGQGPPEGMNQQYYPDG- :: .::. ::::: : :::: ::: ::: :::.::..::::. :: : :.::::::: mKIAA0 GQGGQGGSMMGQRPMAPYRPSQQGSSQQYLGQEEYYSEQYSHS-QGSAEPMSQQYYPDGH 230 240 250 260 270 280 300 310 320 mKIAA4 ------------------------------NSQYGQQQDAYQ-GPPPQQGYPPQQQQYPG ::::.::: .:: : :: : .:::::. mKIAA0 GDYAYQQSSYTEQSYDRSFEDPTQHYYEGGNSQYSQQQAGYQQGTAQQQTY--SQQQYPN 290 300 310 320 330 340 330 340 350 360 370 380 mKIAA4 QQGYPGQQQSYGPSQGGPGPQYPNYPQGQGQQYGGYRPTQPGPPQPPQQRPYGYDQGQYG ::.::::::.:::.::.:. :: .: ::::::::.:: .: :: . :::::::.::::: mKIAA0 QQSYPGQQQGYGPAQGAPS-QYSSYQQGQGQQYGSYRTSQTGP-SAQQQRPYGYEQGQYG 350 360 370 380 390 400 390 mKIAA4 NYQQ :::: mKIAA0 NYQQ >>mFLJ00201 ( 640 res) mpm06260 (640 aa) initn: 136 init1: 100 opt: 312 Z-score: 160.7 bits: 39.3 E(): 0.00083 Smith-Waterman score: 322; 29.755% identity (34.397% ungapped) in 326 aa overlap (79-383:173-475) 50 60 70 80 90 100 mKIAA4 SECSQYQQILHTNLVYLATIADSNQNMQSLLPAPPTQTMPMGPGGMSQSGPPPPPRSHNM : : . .: .:: ..:::: : :.. mFLJ00 GDNGVGQPGLPGAPGQAGAPGPPGLPGPAGLGKPGLDGIPGAPGDKGDSGPPGVPGSRGE 150 160 170 180 190 200 110 120 130 140 150 mKIAA4 PSDGMVGG-GPPA------PHMQNQMNGQMP-GPNHMP-MQGP----GPSQLSMTNSSMN : : :: :::. : . . : : : . : ..:: :: .: .. mFLJ00 P--GAVGPKGPPGVDGVGIPGAAGVPGPQGPVGAKGEPGLRGPPGLIGPVGYGMPGKPG- 210 220 230 240 250 160 170 180 190 200 210 mKIAA4 MPSSSHGSMGGYNHSVPSSQSMPVQNQMTMSQGQPMGNYGPRPNMNMQPNQGPMMHQQPP :....: .:. .. .... : .. :: :.: :: :.. . : .. :: mFLJ00 -PKGDRGPVGA--PGLLGDRGEPGEDGKPGEQG-PQGLGGP-PGL--PGSAGLPGRRGPP 260 270 280 290 300 310 220 230 240 250 260 270 mKIAA4 SQQYNMPPGG---AQHYQGQQAPMGLMGQVNQGSHMMGQRQMP-PYRPPQQGPPQQYSGQ ... .. ::: . .:.:.: :: :. . . :.: .: . :: :. : mFLJ00 GSKGEVGPGGPPGVPGIRGDQGPNGLAGKPG----LPGERGLPGAHGPPGPTGPKGEPGF 320 330 340 350 360 280 290 300 310 320 mKIAA4 EDYYGDQYSHG--GQGPPEGMNQQYYPDGNSQY-GQQQDAYQGPPPQQGYPPQQQQYPGQ : : :: :. : : : : : : :: :: : . . :: mFLJ00 TGRPGGPGVAGALGQKGDLGLPGQPGLRGPSGIPGLQGPA--GPIGPQGLPGLKGE-PGL 370 380 390 400 410 420 330 340 350 360 370 380 mKIAA4 QGYPGQQQSYGPSQGGP-GPQYPNYPQGQGQQYGGYRPTQPGPPQPPQQRPYGYDQGQYG : ::. . :...:: :: :. : . : : : :::: :: : . :. mFLJ00 PGPPGEGKVGEPGSAGPTGP--PGVPGSPGLT-GP--PGPPGPPGPPGA-PGALDETGIA 430 440 450 460 470 390 mKIAA4 NYQQ mFLJ00 GLHLPNGGVEGAVLGKGGKPQFGLGELSAHATPAFTAVLTSPFPASGMPVRFDRTLYNGH 480 490 500 510 520 530 >>mKIAA1172 ( 1200 res) mfj66157 (1200 aa) initn: 258 init1: 127 opt: 313 Z-score: 157.8 bits: 39.6 E(): 0.0012 Smith-Waterman score: 327; 30.128% identity (37.008% ungapped) in 312 aa overlap (82-364:776-1058) 60 70 80 90 100 mKIAA4 SQYQQILHTNLVYLATIADSNQNMQSLLPAPPTQTMPMG--PGGMSQSGPPPPP-----R ::. : :.: : :.. . ::::: : mKIAA1 PPIPVPAPITVPPPQVPPHQPGPPVVGALQPPAFTPPLGMPPPGFGPGVPPPPPPPPFLR 750 760 770 780 790 800 110 120 130 140 150 160 mKIAA4 SHNMP---SDGMVGGGPPAPHMQNQMNGQMPGPNHMPMQGPGPSQLSMTNSSMNMPSSSH : :.. ::: : . .. .: :. :.. :. . . :. . .. . mKIAA1 PGFNPMHLPPGFLPPGPPPP-ITPPVS--IPPPHTPPISIPNLVSGARGNAESGDSAKMY 810 820 830 840 850 860 170 180 190 200 210 mKIAA4 GSMGGYNHSVPSS-QSMPVQNQMTMSQGQPMGNYG--PRPNMNMQ-PNQGPMMHQQPPSQ :: : ..:.: . :: . ... .:. : : : ...: :. : .. .: mKIAA1 GSAGP--PAAPTSLPTPPVTQPVSL-----LGTQGVAPGPVIGLQAPSTG-LLGARPGLI 870 880 890 900 910 220 230 240 250 260 mKIAA4 QYNMPPGGAQHYQGQQAPMGLMGQVNQGSHMMGQRQMPP-----YRPPQQG-----PPQQ . ::: . :. :: : . ::: .: :: :: .: ::. mKIAA1 PLQRPPGMPPPHL-QRFPM--MPPRPMPPHMM-HRGPPPGPGGFAMPPPHGMKGPFPPH- 920 930 940 950 960 270 280 290 300 310 320 mKIAA4 YSGQEDYYGDQYSHGGQGPPEGMNQQYYPDGNSQYGQQQDAYQGPPPQQGYPPQQQQYPG : : . . :: :: : ... :: .: ::: ::::: :: : : mKIAA1 --GPFVRPGGMPGLGGPGPGPGASEDR--DGRQQQPQQQ-----PPPQQQQQQQQPQQPP 970 980 990 1000 1010 1020 330 340 350 360 370 380 mKIAA4 QQGYPGQQQSYGPSQGGPGPQYPN-----YPQGQGQQYGGYRPTQPGPPQPPQQRPYGYD ::. :.:: . :.: : ::. : . .:. :. : : mKIAA1 QQS-PSQQPA--PAQQQP-PQFRNDSRQQFNSGRDQERFGRRSFGSRVENDRERYGSRND 1030 1040 1050 1060 1070 390 mKIAA4 QGQYGNYQQ mKIAA1 DRDNSNRERREWGRRSPDRDRHRDLEERSRRSSGHRDRDRDSRDRESRREKEENRKEKHE 1080 1090 1100 1110 1120 1130 391 residues in 1 query sequences 1768626 residues in 2168 library sequences Scomplib [34t11] start: Mon Mar 27 11:02:31 2006 done: Mon Mar 27 11:02:32 2006 Scan time: 0.580 Display time: 0.050 Function used was FASTA [version 3.4t11 Apr 17, 2002]