# /usr/local/bin/fasta34_t -T 4 -b50 -d10 -E0.01 -H -O./tmp/mph01062.fasta.nr -Q ../query/mKIAA4121.ptfa /cdna4/rodent/rouge_util/new.rouge/nfasta/nr 2 FASTA searches a protein or DNA sequence data bank version 34.26.5 April 26, 2007 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 mKIAA4121, 391 aa vs /cdna4/rodent/rouge_util/new.rouge/nfasta/nr library 2727779818 residues in 7921681 sequences statistics sampled from 60000 to 7885276 sequences Expectation_n fit: rho(ln(x))= 7.2605+/-0.000215; mu= 0.7986+/- 0.012 mean_var=168.7965+/-32.432, 0's: 35 Z-trim: 153 B-trim: 252 in 2/65 Lambda= 0.098717 FASTA (3.5 Sept 2006) function [optimized, BL50 matrix (15:-5)] ktup: 2 join: 37, opt: 25, open/ext: -10/-2, width: 16 The best scores are: opt bits E(7921681) gi|40787716|gb|AAH65062.1| Ss18 protein [Mus muscu ( 392) 2910 426.2 6.1e-117 gi|26350667|dbj|BAC38970.1| unnamed protein produc ( 387) 2882 422.2 9.5e-116 gi|54035529|gb|AAH83824.1| Ss18 protein [Rattus no ( 397) 2879 421.8 1.3e-115 gi|17978533|gb|AAL17747.1| synovial sarcoma associ ( 387) 2878 421.6 1.4e-115 gi|531106|emb|CAA55792.1| SYT [Homo sapiens] g ( 391) 2825 414.1 2.7e-113 gi|60832074|gb|AAX36996.1| synovial sarcoma transl ( 392) 2825 414.1 2.7e-113 gi|64653186|gb|AAH96224.1| Synovial sarcoma transl ( 387) 2799 410.4 3.4e-112 gi|126321745|ref|XP_001362274.1| PREDICTED: simila ( 387) 2783 408.1 1.7e-111 gi|146186773|gb|AAI40482.1| SS18 protein [Bos taur ( 386) 2752 403.7 3.6e-110 gi|144226024|dbj|BAF56182.1| fusion protein SYT-SS ( 457) 2739 401.9 1.5e-109 gi|144226028|dbj|BAF56184.1| fusion protein SYT-SS ( 457) 2739 401.9 1.5e-109 gi|148669639|gb|EDL01586.1| synovial sarcoma trans ( 364) 2735 401.3 1.8e-109 gi|11127697|gb|AAG31035.1| SYT/SSX4v fusion protei ( 369) 2552 375.2 1.3e-101 gi|111598561|gb|AAH80325.1| Synovial sarcoma trans ( 386) 2497 367.4 3e-99 gi|194385562|dbj|BAG65158.1| unnamed protein produ ( 335) 2466 362.9 5.9e-98 gi|221046064|dbj|BAH14709.1| unnamed protein produ ( 335) 2465 362.8 6.5e-98 gi|28278585|gb|AAH44096.1| Ss18-prov protein [Xeno ( 386) 2377 350.3 4.3e-94 gi|74141543|dbj|BAE38546.1| unnamed protein produc ( 418) 2343 345.5 1.3e-92 gi|3915034|sp|Q62280.1|SSXT_MOUSE RecName: Full=Pr ( 418) 2339 344.9 1.9e-92 gi|26350825|dbj|BAC39049.1| unnamed protein produc ( 418) 2332 343.9 3.8e-92 gi|199561150|ref|NP_001094370.1| synovial sarcoma ( 418) 2331 343.8 4.2e-92 gi|114672770|ref|XP_512069.2| PREDICTED: similar t ( 479) 2302 339.7 8.2e-91 gi|19879848|gb|AAM00188.1| SYT protein [Homo sapie ( 414) 2299 339.2 9.9e-91 gi|13384208|gb|AAK21314.1| SYT variant 1 [Homo sap ( 422) 2299 339.2 1e-90 gi|8809766|gb|AAF79937.1| unknown [Homo sapiens] ( 492) 2289 337.9 3e-90 gi|109121837|ref|XP_001098462.1| PREDICTED: simila ( 464) 2286 337.4 3.9e-90 gi|11127695|gb|AAG31034.1| SYT/SSX4 fusion protein ( 492) 2284 337.1 4.9e-90 gi|215274958|sp|Q5RFQ1.2|SSXT_PONAB RecName: Full= ( 418) 2279 336.4 7.2e-90 gi|55725077|emb|CAH89406.1| hypothetical protein [ ( 418) 2274 335.7 1.2e-89 gi|119621617|gb|EAX01212.1| synovial sarcoma trans ( 412) 2273 335.5 1.3e-89 gi|20141795|sp|Q15532.3|SSXT_HUMAN RecName: Full=P ( 418) 2273 335.5 1.3e-89 gi|126321743|ref|XP_001362192.1| PREDICTED: simila ( 418) 2272 335.4 1.4e-89 gi|144226026|dbj|BAF56183.1| fusion protein SYT-SS ( 488) 2273 335.6 1.4e-89 gi|144226022|dbj|BAF56181.1| fusion protein SYT-SS ( 488) 2273 335.6 1.4e-89 gi|158260043|dbj|BAF82199.1| unnamed protein produ ( 418) 2271 335.2 1.6e-89 gi|64654776|gb|AAH96222.1| Synovial sarcoma transl ( 418) 2267 334.7 2.3e-89 gi|224046176|ref|XP_002195422.1| PREDICTED: synovi ( 499) 2254 332.9 9.6e-89 gi|148669641|gb|EDL01588.1| synovial sarcoma trans ( 395) 2196 324.5 2.5e-86 gi|149015673|gb|EDL75032.1| synovial sarcoma trans ( 395) 2184 322.8 8.1e-86 gi|55732380|emb|CAH92891.1| hypothetical protein [ ( 395) 2132 315.4 1.4e-83 gi|149720856|ref|XP_001494150.1| PREDICTED: simila ( 395) 2130 315.1 1.7e-83 gi|194384670|dbj|BAG59495.1| unnamed protein produ ( 395) 2126 314.6 2.5e-83 gi|17978534|gb|AAL17748.1| synovial sarcoma associ ( 352) 2029 300.7 3.3e-79 gi|53127504|emb|CAG31135.1| hypothetical protein [ ( 352) 1956 290.3 4.5e-76 gi|47228215|emb|CAG07610.1| unnamed protein produc ( 602) 1900 282.5 1.6e-73 gi|194386672|dbj|BAG61146.1| unnamed protein produ ( 336) 1758 262.1 1.3e-67 gi|149411285|ref|XP_001505410.1| PREDICTED: simila ( 440) 1700 253.9 4.9e-65 gi|148669638|gb|EDL01585.1| synovial sarcoma trans ( 290) 1485 223.1 6.1e-56 gi|17978535|gb|AAL17749.1| synovial sarcoma associ ( 313) 1485 223.2 6.4e-56 gi|73961320|ref|XP_866939.1| PREDICTED: similar to ( 313) 1456 219.0 1.1e-54 >>gi|40787716|gb|AAH65062.1| Ss18 protein [Mus musculus] (392 aa) initn: 2910 init1: 2910 opt: 2910 Z-score: 2255.8 bits: 426.2 E(): 6.1e-117 Smith-Waterman score: 2910; 100.000% identity (100.000% similar) in 391 aa overlap (1-391:2-392) 10 20 30 40 50 mKIAA4 LGGNMSVAFAAPRQRGKGEITPAAIQKMLDENNHLIQCIMDYQNKGKASECSQYQQILH ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|407 GLGGNMSVAFAAPRQRGKGEITPAAIQKMLDENNHLIQCIMDYQNKGKASECSQYQQILH 10 20 30 40 50 60 60 70 80 90 100 110 mKIAA4 TNLVYLATIADSNQNMQSLLPAPPTQTMPMGPGGMSQSGPPPPPRSHNMPSDGMVGGGPP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|407 TNLVYLATIADSNQNMQSLLPAPPTQTMPMGPGGMSQSGPPPPPRSHNMPSDGMVGGGPP 70 80 90 100 110 120 120 130 140 150 160 170 mKIAA4 APHMQNQMNGQMPGPNHMPMQGPGPSQLSMTNSSMNMPSSSHGSMGGYNHSVPSSQSMPV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|407 APHMQNQMNGQMPGPNHMPMQGPGPSQLSMTNSSMNMPSSSHGSMGGYNHSVPSSQSMPV 130 140 150 160 170 180 180 190 200 210 220 230 mKIAA4 QNQMTMSQGQPMGNYGPRPNMNMQPNQGPMMHQQPPSQQYNMPPGGAQHYQGQQAPMGLM :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|407 QNQMTMSQGQPMGNYGPRPNMNMQPNQGPMMHQQPPSQQYNMPPGGAQHYQGQQAPMGLM 190 200 210 220 230 240 240 250 260 270 280 290 mKIAA4 GQVNQGSHMMGQRQMPPYRPPQQGPPQQYSGQEDYYGDQYSHGGQGPPEGMNQQYYPDGN :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|407 GQVNQGSHMMGQRQMPPYRPPQQGPPQQYSGQEDYYGDQYSHGGQGPPEGMNQQYYPDGN 250 260 270 280 290 300 300 310 320 330 340 350 mKIAA4 SQYGQQQDAYQGPPPQQGYPPQQQQYPGQQGYPGQQQSYGPSQGGPGPQYPNYPQGQGQQ :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|407 SQYGQQQDAYQGPPPQQGYPPQQQQYPGQQGYPGQQQSYGPSQGGPGPQYPNYPQGQGQQ 310 320 330 340 350 360 360 370 380 390 mKIAA4 YGGYRPTQPGPPQPPQQRPYGYDQGQYGNYQQ :::::::::::::::::::::::::::::::: gi|407 YGGYRPTQPGPPQPPQQRPYGYDQGQYGNYQQ 370 380 390 >>gi|26350667|dbj|BAC38970.1| unnamed protein product [M (387 aa) initn: 2882 init1: 2882 opt: 2882 Z-score: 2234.3 bits: 422.2 E(): 9.5e-116 Smith-Waterman score: 2882; 100.000% identity (100.000% similar) in 387 aa overlap (5-391:1-387) 10 20 30 40 50 60 mKIAA4 LGGNMSVAFAAPRQRGKGEITPAAIQKMLDENNHLIQCIMDYQNKGKASECSQYQQILHT :::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|263 MSVAFAAPRQRGKGEITPAAIQKMLDENNHLIQCIMDYQNKGKASECSQYQQILHT 10 20 30 40 50 70 80 90 100 110 120 mKIAA4 NLVYLATIADSNQNMQSLLPAPPTQTMPMGPGGMSQSGPPPPPRSHNMPSDGMVGGGPPA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|263 NLVYLATIADSNQNMQSLLPAPPTQTMPMGPGGMSQSGPPPPPRSHNMPSDGMVGGGPPA 60 70 80 90 100 110 130 140 150 160 170 180 mKIAA4 PHMQNQMNGQMPGPNHMPMQGPGPSQLSMTNSSMNMPSSSHGSMGGYNHSVPSSQSMPVQ :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|263 PHMQNQMNGQMPGPNHMPMQGPGPSQLSMTNSSMNMPSSSHGSMGGYNHSVPSSQSMPVQ 120 130 140 150 160 170 190 200 210 220 230 240 mKIAA4 NQMTMSQGQPMGNYGPRPNMNMQPNQGPMMHQQPPSQQYNMPPGGAQHYQGQQAPMGLMG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|263 NQMTMSQGQPMGNYGPRPNMNMQPNQGPMMHQQPPSQQYNMPPGGAQHYQGQQAPMGLMG 180 190 200 210 220 230 250 260 270 280 290 300 mKIAA4 QVNQGSHMMGQRQMPPYRPPQQGPPQQYSGQEDYYGDQYSHGGQGPPEGMNQQYYPDGNS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|263 QVNQGSHMMGQRQMPPYRPPQQGPPQQYSGQEDYYGDQYSHGGQGPPEGMNQQYYPDGNS 240 250 260 270 280 290 310 320 330 340 350 360 mKIAA4 QYGQQQDAYQGPPPQQGYPPQQQQYPGQQGYPGQQQSYGPSQGGPGPQYPNYPQGQGQQY :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|263 QYGQQQDAYQGPPPQQGYPPQQQQYPGQQGYPGQQQSYGPSQGGPGPQYPNYPQGQGQQY 300 310 320 330 340 350 370 380 390 mKIAA4 GGYRPTQPGPPQPPQQRPYGYDQGQYGNYQQ ::::::::::::::::::::::::::::::: gi|263 GGYRPTQPGPPQPPQQRPYGYDQGQYGNYQQ 360 370 380 >>gi|54035529|gb|AAH83824.1| Ss18 protein [Rattus norveg (397 aa) initn: 2879 init1: 2879 opt: 2879 Z-score: 2231.9 bits: 421.8 E(): 1.3e-115 Smith-Waterman score: 2879; 98.465% identity (100.000% similar) in 391 aa overlap (1-391:7-397) 10 20 30 40 50 mKIAA4 LGGNMSVAFAAPRQRGKGEITPAAIQKMLDENNHLIQCIMDYQNKGKASECSQY :::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|540 GLADRGLGGNMSVAFAAPRQRGKGEITPAAIQKMLDENNHLIQCIMDYQNKGKASECSQY 10 20 30 40 50 60 60 70 80 90 100 110 mKIAA4 QQILHTNLVYLATIADSNQNMQSLLPAPPTQTMPMGPGGMSQSGPPPPPRSHNMPSDGMV :::::::::::::::::::::::::::::::..:::::::::::::::::::.::::::: gi|540 QQILHTNLVYLATIADSNQNMQSLLPAPPTQNVPMGPGGMSQSGPPPPPRSHSMPSDGMV 70 80 90 100 110 120 120 130 140 150 160 170 mKIAA4 GGGPPAPHMQNQMNGQMPGPNHMPMQGPGPSQLSMTNSSMNMPSSSHGSMGGYNHSVPSS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|540 GGGPPAPHMQNQMNGQMPGPNHMPMQGPGPSQLSMTNSSMNMPSSSHGSMGGYNHSVPSS 130 140 150 160 170 180 180 190 200 210 220 230 mKIAA4 QSMPVQNQMTMSQGQPMGNYGPRPNMNMQPNQGPMMHQQPPSQQYNMPPGGAQHYQGQQA :::::::::::::::::::::::::::::::::::::::::::::.:::::::::::::: gi|540 QSMPVQNQMTMSQGQPMGNYGPRPNMNMQPNQGPMMHQQPPSQQYSMPPGGAQHYQGQQA 190 200 210 220 230 240 240 250 260 270 280 290 mKIAA4 PMGLMGQVNQGSHMMGQRQMPPYRPPQQGPPQQYSGQEDYYGDQYSHGGQGPPEGMNQQY :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|540 PMGLMGQVNQGSHMMGQRQMPPYRPPQQGPPQQYSGQEDYYGDQYSHGGQGPPEGMNQQY 250 260 270 280 290 300 300 310 320 330 340 350 mKIAA4 YPDGNSQYGQQQDAYQGPPPQQGYPPQQQQYPGQQGYPGQQQSYGPSQGGPGPQYPNYPQ ::::::::::::::::::::::::::::::::::::::::::.:::.::::::::::::: gi|540 YPDGNSQYGQQQDAYQGPPPQQGYPPQQQQYPGQQGYPGQQQGYGPTQGGPGPQYPNYPQ 310 320 330 340 350 360 360 370 380 390 mKIAA4 GQGQQYGGYRPTQPGPPQPPQQRPYGYDQGQYGNYQQ ::::::::::::::::::::::::::::::::::::: gi|540 GQGQQYGGYRPTQPGPPQPPQQRPYGYDQGQYGNYQQ 370 380 390 >>gi|17978533|gb|AAL17747.1| synovial sarcoma associated (387 aa) initn: 2878 init1: 2878 opt: 2878 Z-score: 2231.3 bits: 421.6 E(): 1.4e-115 Smith-Waterman score: 2878; 99.742% identity (100.000% similar) in 387 aa overlap (5-391:1-387) 10 20 30 40 50 60 mKIAA4 LGGNMSVAFAAPRQRGKGEITPAAIQKMLDENNHLIQCIMDYQNKGKASECSQYQQILHT :::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|179 MSVAFAAPRQRGKGEITPAAIQKMLDENNHLIQCIMDYQNKGKASECSQYQQILHT 10 20 30 40 50 70 80 90 100 110 120 mKIAA4 NLVYLATIADSNQNMQSLLPAPPTQTMPMGPGGMSQSGPPPPPRSHNMPSDGMVGGGPPA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|179 NLVYLATIADSNQNMQSLLPAPPTQTMPMGPGGMSQSGPPPPPRSHNMPSDGMVGGGPPA 60 70 80 90 100 110 130 140 150 160 170 180 mKIAA4 PHMQNQMNGQMPGPNHMPMQGPGPSQLSMTNSSMNMPSSSHGSMGGYNHSVPSSQSMPVQ :::::::::::::::::::::::::::::::::::::::.:::::::::::::::::::: gi|179 PHMQNQMNGQMPGPNHMPMQGPGPSQLSMTNSSMNMPSSNHGSMGGYNHSVPSSQSMPVQ 120 130 140 150 160 170 190 200 210 220 230 240 mKIAA4 NQMTMSQGQPMGNYGPRPNMNMQPNQGPMMHQQPPSQQYNMPPGGAQHYQGQQAPMGLMG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|179 NQMTMSQGQPMGNYGPRPNMNMQPNQGPMMHQQPPSQQYNMPPGGAQHYQGQQAPMGLMG 180 190 200 210 220 230 250 260 270 280 290 300 mKIAA4 QVNQGSHMMGQRQMPPYRPPQQGPPQQYSGQEDYYGDQYSHGGQGPPEGMNQQYYPDGNS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|179 QVNQGSHMMGQRQMPPYRPPQQGPPQQYSGQEDYYGDQYSHGGQGPPEGMNQQYYPDGNS 240 250 260 270 280 290 310 320 330 340 350 360 mKIAA4 QYGQQQDAYQGPPPQQGYPPQQQQYPGQQGYPGQQQSYGPSQGGPGPQYPNYPQGQGQQY :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|179 QYGQQQDAYQGPPPQQGYPPQQQQYPGQQGYPGQQQSYGPSQGGPGPQYPNYPQGQGQQY 300 310 320 330 340 350 370 380 390 mKIAA4 GGYRPTQPGPPQPPQQRPYGYDQGQYGNYQQ ::::::::::::::::::::::::::::::: gi|179 GGYRPTQPGPPQPPQQRPYGYDQGQYGNYQQ 360 370 380 >>gi|531106|emb|CAA55792.1| SYT [Homo sapiens] gi|49 (391 aa) initn: 2825 init1: 2825 opt: 2825 Z-score: 2190.4 bits: 414.1 E(): 2.7e-113 Smith-Waterman score: 2825; 95.652% identity (99.233% similar) in 391 aa overlap (1-391:1-391) 10 20 30 40 50 60 mKIAA4 LGGNMSVAFAAPRQRGKGEITPAAIQKMLDENNHLIQCIMDYQNKGKASECSQYQQILHT .:::::::::::::::::::::::::::::.:::::::::: :::::.::::::::.::: gi|531 MGGNMSVAFAAPRQRGKGEITPAAIQKMLDDNNHLIQCIMDSQNKGKTSECSQYQQMLHT 10 20 30 40 50 60 70 80 90 100 110 120 mKIAA4 NLVYLATIADSNQNMQSLLPAPPTQTMPMGPGGMSQSGPPPPPRSHNMPSDGMVGGGPPA :::::::::::::::::::::::::.::::::::.::::::::::::::::::::::::: gi|531 NLVYLATIADSNQNMQSLLPAPPTQNMPMGPGGMNQSGPPPPPRSHNMPSDGMVGGGPPA 70 80 90 100 110 120 130 140 150 160 170 180 mKIAA4 PHMQNQMNGQMPGPNHMPMQGPGPSQLSMTNSSMNMPSSSHGSMGGYNHSVPSSQSMPVQ ::::::::::::::::::::::::.::.:::::::::::::::::::::::::::::::: gi|531 PHMQNQMNGQMPGPNHMPMQGPGPNQLNMTNSSMNMPSSSHGSMGGYNHSVPSSQSMPVQ 130 140 150 160 170 180 190 200 210 220 230 240 mKIAA4 NQMTMSQGQPMGNYGPRPNMNMQPNQGPMMHQQPPSQQYNMPPGGAQHYQGQQAPMGLMG ::::::::::::::::::::.::::::::::::::::::::: ::.::::::: :::.:: gi|531 NQMTMSQGQPMGNYGPRPNMSMQPNQGPMMHQQPPSQQYNMPQGGGQHYQGQQPPMGMMG 190 200 210 220 230 240 250 260 270 280 290 300 mKIAA4 QVNQGSHMMGQRQMPPYRPPQQGPPQQYSGQEDYYGDQYSHGGQGPPEGMNQQYYPDGNS :::::.:::::::.:::::::::::::::::::::::::::::::::::::::::::::: gi|531 QVNQGNHMMGQRQIPPYRPPQQGPPQQYSGQEDYYGDQYSHGGQGPPEGMNQQYYPDGNS 250 260 270 280 290 300 310 320 330 340 350 360 mKIAA4 QYGQQQDAYQGPPPQQGYPPQQQQYPGQQGYPGQQQSYGPSQGGPGPQYPNYPQGQGQQY ::::::::::::::::::::::::::::::::::::.::::::::::::::::::::::: gi|531 QYGQQQDAYQGPPPQQGYPPQQQQYPGQQGYPGQQQGYGPSQGGPGPQYPNYPQGQGQQY 310 320 330 340 350 360 370 380 390 mKIAA4 GGYRPTQPGPPQPPQQRPYGYDQGQYGNYQQ ::::::::::::::::::::::::::::::: gi|531 GGYRPTQPGPPQPPQQRPYGYDQGQYGNYQQ 370 380 390 >>gi|60832074|gb|AAX36996.1| synovial sarcoma translocat (392 aa) initn: 2825 init1: 2825 opt: 2825 Z-score: 2190.4 bits: 414.1 E(): 2.7e-113 Smith-Waterman score: 2825; 95.652% identity (99.233% similar) in 391 aa overlap (1-391:1-391) 10 20 30 40 50 60 mKIAA4 LGGNMSVAFAAPRQRGKGEITPAAIQKMLDENNHLIQCIMDYQNKGKASECSQYQQILHT .:::::::::::::::::::::::::::::.:::::::::: :::::.::::::::.::: gi|608 MGGNMSVAFAAPRQRGKGEITPAAIQKMLDDNNHLIQCIMDSQNKGKTSECSQYQQMLHT 10 20 30 40 50 60 70 80 90 100 110 120 mKIAA4 NLVYLATIADSNQNMQSLLPAPPTQTMPMGPGGMSQSGPPPPPRSHNMPSDGMVGGGPPA :::::::::::::::::::::::::.::::::::.::::::::::::::::::::::::: gi|608 NLVYLATIADSNQNMQSLLPAPPTQNMPMGPGGMNQSGPPPPPRSHNMPSDGMVGGGPPA 70 80 90 100 110 120 130 140 150 160 170 180 mKIAA4 PHMQNQMNGQMPGPNHMPMQGPGPSQLSMTNSSMNMPSSSHGSMGGYNHSVPSSQSMPVQ ::::::::::::::::::::::::.::.:::::::::::::::::::::::::::::::: gi|608 PHMQNQMNGQMPGPNHMPMQGPGPNQLNMTNSSMNMPSSSHGSMGGYNHSVPSSQSMPVQ 130 140 150 160 170 180 190 200 210 220 230 240 mKIAA4 NQMTMSQGQPMGNYGPRPNMNMQPNQGPMMHQQPPSQQYNMPPGGAQHYQGQQAPMGLMG ::::::::::::::::::::.::::::::::::::::::::: ::.::::::: :::.:: gi|608 NQMTMSQGQPMGNYGPRPNMSMQPNQGPMMHQQPPSQQYNMPQGGGQHYQGQQPPMGMMG 190 200 210 220 230 240 250 260 270 280 290 300 mKIAA4 QVNQGSHMMGQRQMPPYRPPQQGPPQQYSGQEDYYGDQYSHGGQGPPEGMNQQYYPDGNS :::::.:::::::.:::::::::::::::::::::::::::::::::::::::::::::: gi|608 QVNQGNHMMGQRQIPPYRPPQQGPPQQYSGQEDYYGDQYSHGGQGPPEGMNQQYYPDGNS 250 260 270 280 290 300 310 320 330 340 350 360 mKIAA4 QYGQQQDAYQGPPPQQGYPPQQQQYPGQQGYPGQQQSYGPSQGGPGPQYPNYPQGQGQQY ::::::::::::::::::::::::::::::::::::.::::::::::::::::::::::: gi|608 QYGQQQDAYQGPPPQQGYPPQQQQYPGQQGYPGQQQGYGPSQGGPGPQYPNYPQGQGQQY 310 320 330 340 350 360 370 380 390 mKIAA4 GGYRPTQPGPPQPPQQRPYGYDQGQYGNYQQ ::::::::::::::::::::::::::::::: gi|608 GGYRPTQPGPPQPPQQRPYGYDQGQYGNYQQD 370 380 390 >>gi|64653186|gb|AAH96224.1| Synovial sarcoma translocat (387 aa) initn: 2799 init1: 2799 opt: 2799 Z-score: 2170.5 bits: 410.4 E(): 3.4e-112 Smith-Waterman score: 2799; 95.866% identity (99.225% similar) in 387 aa overlap (5-391:1-387) 10 20 30 40 50 60 mKIAA4 LGGNMSVAFAAPRQRGKGEITPAAIQKMLDENNHLIQCIMDYQNKGKASECSQYQQILHT ::::::::::::::::::::::::::.:::::::::: :::::.::::::::.::: gi|646 MSVAFAAPRQRGKGEITPAAIQKMLDDNNHLIQCIMDSQNKGKTSECSQYQQMLHT 10 20 30 40 50 70 80 90 100 110 120 mKIAA4 NLVYLATIADSNQNMQSLLPAPPTQTMPMGPGGMSQSGPPPPPRSHNMPSDGMVGGGPPA :::::::::::::::::::::::::.::::::::.::::::::::::::::::::::::: gi|646 NLVYLATIADSNQNMQSLLPAPPTQNMPMGPGGMNQSGPPPPPRSHNMPSDGMVGGGPPA 60 70 80 90 100 110 130 140 150 160 170 180 mKIAA4 PHMQNQMNGQMPGPNHMPMQGPGPSQLSMTNSSMNMPSSSHGSMGGYNHSVPSSQSMPVQ ::::::::::::::::::::::::.::.:::::::::::::::::::::::::::::::: gi|646 PHMQNQMNGQMPGPNHMPMQGPGPNQLNMTNSSMNMPSSSHGSMGGYNHSVPSSQSMPVQ 120 130 140 150 160 170 190 200 210 220 230 240 mKIAA4 NQMTMSQGQPMGNYGPRPNMNMQPNQGPMMHQQPPSQQYNMPPGGAQHYQGQQAPMGLMG ::::::::::::::::::::.::::::::::::::::::::: ::.::::::: :::.:: gi|646 NQMTMSQGQPMGNYGPRPNMSMQPNQGPMMHQQPPSQQYNMPQGGGQHYQGQQPPMGMMG 180 190 200 210 220 230 250 260 270 280 290 300 mKIAA4 QVNQGSHMMGQRQMPPYRPPQQGPPQQYSGQEDYYGDQYSHGGQGPPEGMNQQYYPDGNS :::::.:::::::.:::::::::::::::::::::::::::::::::::::::::::::: gi|646 QVNQGNHMMGQRQIPPYRPPQQGPPQQYSGQEDYYGDQYSHGGQGPPEGMNQQYYPDGNS 240 250 260 270 280 290 310 320 330 340 350 360 mKIAA4 QYGQQQDAYQGPPPQQGYPPQQQQYPGQQGYPGQQQSYGPSQGGPGPQYPNYPQGQGQQY ::::::::::::::::::::::::::::::::::::.::::::::::::::::::::::: gi|646 QYGQQQDAYQGPPPQQGYPPQQQQYPGQQGYPGQQQGYGPSQGGPGPQYPNYPQGQGQQY 300 310 320 330 340 350 370 380 390 mKIAA4 GGYRPTQPGPPQPPQQRPYGYDQGQYGNYQQ ::::::::::::::::::::::::::::::: gi|646 GGYRPTQPGPPQPPQQRPYGYDQGQYGNYQQ 360 370 380 >>gi|126321745|ref|XP_001362274.1| PREDICTED: similar to (387 aa) initn: 2783 init1: 2783 opt: 2783 Z-score: 2158.1 bits: 408.1 E(): 1.7e-111 Smith-Waterman score: 2783; 95.349% identity (98.966% similar) in 387 aa overlap (5-391:1-387) 10 20 30 40 50 60 mKIAA4 LGGNMSVAFAAPRQRGKGEITPAAIQKMLDENNHLIQCIMDYQNKGKASECSQYQQILHT :::::::::::::::::::::::::::::::::::::::::::..:::::::.::: gi|126 MSVAFAAPRQRGKGEITPAAIQKMLDENNHLIQCIMDYQNKGKTTECSQYQQMLHT 10 20 30 40 50 70 80 90 100 110 120 mKIAA4 NLVYLATIADSNQNMQSLLPAPPTQTMPMGPGGMSQSGPPPPPRSHNMPSDGMVGGGPPA :::::::::::::::::::::::::.::::::::.::::::::::::: ::::::::::: gi|126 NLVYLATIADSNQNMQSLLPAPPTQNMPMGPGGMNQSGPPPPPRSHNMSSDGMVGGGPPA 60 70 80 90 100 110 130 140 150 160 170 180 mKIAA4 PHMQNQMNGQMPGPNHMPMQGPGPSQLSMTNSSMNMPSSSHGSMGGYNHSVPSSQSMPVQ ::::::::::::::::::::::::.::.:::::::::::.:::::::::::::::::::: gi|126 PHMQNQMNGQMPGPNHMPMQGPGPNQLNMTNSSMNMPSSNHGSMGGYNHSVPSSQSMPVQ 120 130 140 150 160 170 190 200 210 220 230 240 mKIAA4 NQMTMSQGQPMGNYGPRPNMNMQPNQGPMMHQQPPSQQYNMPPGGAQHYQGQQAPMGLMG :::::::::::::::::::::::::::::::::::::::::: ::.::::::: :::.:: gi|126 NQMTMSQGQPMGNYGPRPNMNMQPNQGPMMHQQPPSQQYNMPQGGGQHYQGQQPPMGMMG 180 190 200 210 220 230 250 260 270 280 290 300 mKIAA4 QVNQGSHMMGQRQMPPYRPPQQGPPQQYSGQEDYYGDQYSHGGQGPPEGMNQQYYPDGNS :::::.:::::::.:::::::::::::::::::::::::::::::::::::::::::::: gi|126 QVNQGNHMMGQRQIPPYRPPQQGPPQQYSGQEDYYGDQYSHGGQGPPEGMNQQYYPDGNS 240 250 260 270 280 290 310 320 330 340 350 360 mKIAA4 QYGQQQDAYQGPPPQQGYPPQQQQYPGQQGYPGQQQSYGPSQGGPGPQYPNYPQGQGQQY ::::::::::::::::::::::::::::: ::::::.:::::.::::::::::::::::: gi|126 QYGQQQDAYQGPPPQQGYPPQQQQYPGQQPYPGQQQGYGPSQSGPGPQYPNYPQGQGQQY 300 310 320 330 340 350 370 380 390 mKIAA4 GGYRPTQPGPPQPPQQRPYGYDQGQYGNYQQ ::::::::::::::::::::::::::::::: gi|126 GGYRPTQPGPPQPPQQRPYGYDQGQYGNYQQ 360 370 380 >>gi|146186773|gb|AAI40482.1| SS18 protein [Bos taurus] (386 aa) initn: 2377 init1: 2243 opt: 2752 Z-score: 2134.3 bits: 403.7 E(): 3.6e-110 Smith-Waterman score: 2752; 94.315% identity (98.966% similar) in 387 aa overlap (5-391:1-386) 10 20 30 40 50 60 mKIAA4 LGGNMSVAFAAPRQRGKGEITPAAIQKMLDENNHLIQCIMDYQNKGKASECSQYQQILHT :::::::::::::::::::::::::::::::::::::::::::.::::::::.::: gi|146 MSVAFAAPRQRGKGEITPAAIQKMLDENNHLIQCIMDYQNKGKTSECSQYQQMLHT 10 20 30 40 50 70 80 90 100 110 120 mKIAA4 NLVYLATIADSNQNMQSLLPAPPTQTMPMGPGGMSQSGPPPPPRSHNMPSDGMVGGGPPA :::::::::::::::::::::::::.::::::::: ::::::::.::::::::::::::: gi|146 NLVYLATIADSNQNMQSLLPAPPTQNMPMGPGGMSPSGPPPPPRAHNMPSDGMVGGGPPA 60 70 80 90 100 110 130 140 150 160 170 180 mKIAA4 PHMQNQMNGQMPGPNHMPMQGPGPSQLSMTNSSMNMPSSSHGSMGGYNHSVPSSQSMPVQ ::::::::::::::::.:::::::.::.:::::::::::::::::::::::::::::::: gi|146 PHMQNQMNGQMPGPNHIPMQGPGPNQLNMTNSSMNMPSSSHGSMGGYNHSVPSSQSMPVQ 120 130 140 150 160 170 190 200 210 220 230 240 mKIAA4 NQMTMSQGQPMGNYGPRPNMNMQPNQGPMMHQQPPSQQYNMPPGGAQHYQGQQAPMGLMG ::::::::::::::::::::.:::::::.::::::::::::: ::.::::::: :::.:. gi|146 NQMTMSQGQPMGNYGPRPNMSMQPNQGPVMHQQPPSQQYNMPQGGGQHYQGQQPPMGMMS 180 190 200 210 220 230 250 260 270 280 290 300 mKIAA4 QVNQGSHMMGQRQMPPYRPPQQGPPQQYSGQEDYYGDQYSHGGQGPPEGMNQQYYPDGNS :::::.::.::::.::::::::::::::::::::::.::::::::::::::::::::::: gi|146 QVNQGNHMLGQRQIPPYRPPQQGPPQQYSGQEDYYGEQYSHGGQGPPEGMNQQYYPDGNS 240 250 260 270 280 290 310 320 330 340 350 360 mKIAA4 QYGQQQDAYQGPPPQQGYPPQQQQYPGQQGYPGQQQSYGPSQGGPGPQYPNYPQGQGQQY ::::::::::::::::::::::: ::::::::::::.::::::::::::::::::::::: gi|146 QYGQQQDAYQGPPPQQGYPPQQQ-YPGQQGYPGQQQGYGPSQGGPGPQYPNYPQGQGQQY 300 310 320 330 340 350 370 380 390 mKIAA4 GGYRPTQPGPPQPPQQRPYGYDQGQYGNYQQ :::::.::::::::::::::::::::::::: gi|146 GGYRPAQPGPPQPPQQRPYGYDQGQYGNYQQ 360 370 380 >>gi|144226024|dbj|BAF56182.1| fusion protein SYT-SSX1 [ (457 aa) initn: 2739 init1: 2739 opt: 2739 Z-score: 2123.4 bits: 401.9 E(): 1.5e-109 Smith-Waterman score: 2739; 95.778% identity (99.208% similar) in 379 aa overlap (5-383:1-379) 10 20 30 40 50 60 mKIAA4 LGGNMSVAFAAPRQRGKGEITPAAIQKMLDENNHLIQCIMDYQNKGKASECSQYQQILHT ::::::::::::::::::::::::::.:::::::::: :::::.::::::::.::: gi|144 MSVAFAAPRQRGKGEITPAAIQKMLDDNNHLIQCIMDSQNKGKTSECSQYQQMLHT 10 20 30 40 50 70 80 90 100 110 120 mKIAA4 NLVYLATIADSNQNMQSLLPAPPTQTMPMGPGGMSQSGPPPPPRSHNMPSDGMVGGGPPA :::::::::::::::::::::::::.::::::::.::::::::::::::::::::::::: gi|144 NLVYLATIADSNQNMQSLLPAPPTQNMPMGPGGMNQSGPPPPPRSHNMPSDGMVGGGPPA 60 70 80 90 100 110 130 140 150 160 170 180 mKIAA4 PHMQNQMNGQMPGPNHMPMQGPGPSQLSMTNSSMNMPSSSHGSMGGYNHSVPSSQSMPVQ ::::::::::::::::::::::::.::.:::::::::::::::::::::::::::::::: gi|144 PHMQNQMNGQMPGPNHMPMQGPGPNQLNMTNSSMNMPSSSHGSMGGYNHSVPSSQSMPVQ 120 130 140 150 160 170 190 200 210 220 230 240 mKIAA4 NQMTMSQGQPMGNYGPRPNMNMQPNQGPMMHQQPPSQQYNMPPGGAQHYQGQQAPMGLMG ::::::::::::::::::::.::::::::::::::::::::: ::.::::::: :::.:: gi|144 NQMTMSQGQPMGNYGPRPNMSMQPNQGPMMHQQPPSQQYNMPQGGGQHYQGQQPPMGMMG 180 190 200 210 220 230 250 260 270 280 290 300 mKIAA4 QVNQGSHMMGQRQMPPYRPPQQGPPQQYSGQEDYYGDQYSHGGQGPPEGMNQQYYPDGNS :::::.:::::::.:::::::::::::::::::::::::::::::::::::::::::::: gi|144 QVNQGNHMMGQRQIPPYRPPQQGPPQQYSGQEDYYGDQYSHGGQGPPEGMNQQYYPDGNS 240 250 260 270 280 290 310 320 330 340 350 360 mKIAA4 QYGQQQDAYQGPPPQQGYPPQQQQYPGQQGYPGQQQSYGPSQGGPGPQYPNYPQGQGQQY ::::::::::::::::::::::::::::::::::::.::::::::::::::::::::::: gi|144 QYGQQQDAYQGPPPQQGYPPQQQQYPGQQGYPGQQQGYGPSQGGPGPQYPNYPQGQGQQY 300 310 320 330 340 350 370 380 390 mKIAA4 GGYRPTQPGPPQPPQQRPYGYDQGQYGNYQQ ::::::::::::::::::::::: gi|144 GGYRPTQPGPPQPPQQRPYGYDQIMPKKPAEDENDSKGVSEASGPQNDGKQLHPPGKANI 360 370 380 390 400 410 391 residues in 1 query sequences 2727779818 residues in 7921681 library sequences Tcomplib [34.26] (2 proc) start: Tue Mar 17 15:38:08 2009 done: Tue Mar 17 15:44:11 2009 Total Scan time: 831.600 Total Display time: 0.090 Function used was FASTA [version 34.26.5 April 26, 2007]