FASTA searches a protein or DNA sequence data bank version 3.4t11 Apr 17, 2002 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 ../query/mKIAA0008.ptfa, 773 aa vs ./tmplib.26680 library 1768244 residues in 2168 sequences Expectation_n fit: rho(ln(x))= 5.9685+/-0.00568; mu= 12.9590+/- 0.378 mean_var=144.7854+/-33.870, 0's: 0 Z-trim: 5 B-trim: 104 in 1/35 Lambda= 0.1066 FASTA (3.45 Mar 2002) function [optimized, BL50 matrix (15:-5)] ktup: 2 join: 38, opt: 26, open/ext: -10/-2, width: 16 The best scores are: opt bits E(2168) mKIAA0964 ( 986 res) mbg00056 ( 986) 315 60 1e-09 mKIAA4162 ( 990 res) mbg04507 ( 990) 264 53 2.3e-07 >>mKIAA0964 ( 986 res) mbg00056 (986 aa) initn: 323 init1: 214 opt: 315 Z-score: 266.8 bits: 60.5 E(): 1e-09 Smith-Waterman score: 328; 25.000% identity (28.333% ungapped) in 408 aa overlap (238-606:584-982) 210 220 230 240 250 260 mKIAA0 VMQPVLFTSGKGTESAATQRAKLMARTVSSTTRKPVTRATNEKGSERMRPSGGRPAKKPE :: :: .: ....: . . . . mKIAA0 STGSLSNSRTLPSSSCLVAYKKTPPPVPPRTTSKPFISVTVQSSTESAQDTY---LDSQD 560 570 580 590 600 610 270 280 290 300 310 320 mKIAA0 GKPDKVIPSKVERDEKHLDSQTRETS-EMGPLGVFREVESLPATAPAQGKERKSF--APK : . . : . . :::.:: : : . :. : : .:. .. . . mKIAA0 HKSEVTSQSGLSNSSDSLDSSTRPPSVTRGGITPGPEAPEPPPKHAALKSEQGTLTSSES 620 630 640 650 660 670 330 340 350 360 370 380 mKIAA0 HCVFQPPCGLKSYQVAPLSPRSANAFLTPNCDWNQLRPEVFSTTTQDKANEILVQQGLES : : :.: . ::: : : .:. . .. : .. ::: ::. ... .: mKIAA0 HSEAIPKRKLSSIGIQ-LSPSSPNRSSAPSHSMSSRRDT--DSDTQD-ANDSSCKSSERS 680 690 700 710 720 390 400 410 420 mKIAA0 LTD--------------RSKEHVLN-QKGASTSDSNHASVK--GVP-------CSEGSEG : : :. .. . ... : .:.. ... ..: : .: . mKIAA0 LPDCTSHPNSISIDAGPRQAPKIAQIKRNLSYGDNSDPALEASSLPPPDPWLETSSSSPA 730 740 750 760 770 780 430 440 450 460 470 mKIAA0 QTSQPP---HDVPYFRKILQSETDRLTSHC--LEWEGKLDLDISDEAKGLIRTTVGQTRL . .:: .: .: :.::.::.:: . : .. : : . ..:.:. : . ..::...: mKIAA0 EPAQPGACRRDGYWFLKLLQAETERLEGWCCQMDKETKEN-NLSEEVLGKVLSAVGSAQL 790 800 810 820 830 840 480 490 500 510 520 530 mKIAA0 LIKERFRQFEGLVDNCEYKRGEKETTCTDLDGFWDMVSFQVDDVNQKFNNLIKLEASGWK :....:.::.:: .. .. . : :: ::::.......:...::..: .:.:..:. mKIAA0 LMSQKFQQFRGLCEQNLNPDANPRPTAQDLAGFWDLLQLSIEDISMKFDELYHLKANSWQ 850 860 870 880 890 900 540 550 560 570 580 mKIAA0 DSNNPSKKVLRKK---IVPGRTSKAK----QDEDGRAAARSRLAAIKNAMKGRPQQEVQA ..: :. .:: :: . .:.: .:. . :. ..: : : . .. :. mKIAA0 LVETPEKRKEEKKPPPPVPKKPAKSKAAVSRDKASDAGDKQRQEARKRLLAAKRAASVRQ 910 920 930 940 950 960 590 600 610 620 630 640 mKIAA0 HAAAPETTKEVDKIVFDAGFFRIESPVKSFSVLSSERRSQRFGTPLSASKVVPEGRAAGD ..:. :.. .. : .: mKIAA0 NSAT-ESADSIEIYVPEAQTRL 970 980 >>mKIAA4162 ( 990 res) mbg04507 (990 aa) initn: 202 init1: 202 opt: 264 Z-score: 224.4 bits: 52.7 E(): 2.3e-07 Smith-Waterman score: 273; 30.726% identity (32.934% ungapped) in 179 aa overlap (421-588:798-975) 400 410 420 430 440 mKIAA0 EHVLNQKGASTSDSNHASVKGVPCSEGSEGQTSQPPHDVPYFRKILQSETDRLTSHC--L : : .: .: :.::.: ::. . : . mKIAA4 DDFDTDFDPSILPPPDPWIDSITEDPLEAVQRSVCHRDGHWFLKLLQAERDRMEGWCKLM 770 780 790 800 810 820 450 460 470 480 490 500 mKIAA0 EWEGKLDLDISDEAKGLIRTTVGQTRLLIKERFRQFEGLVDNCEYKRGEKETTCTDLDGF : : . . .. .. : :::.::...::. ..: ::. : .. .. . : :: :: mKIAA4 EREEREN-NLPEDILGKIRTAVGSAQLLMAQKFYQFRELCEENLNPNAHPRPTSQDLAGF 830 840 850 860 870 880 510 520 530 540 550 mKIAA0 WDMVSFQVDDVNQKFNNLIKLEASGWKDSNNPSKKVLRKKI-VPGRTSKAKQ-------- :::..........::..: .:.:..::. . .:: : :: . .:. mKIAA4 WDMLQLSIENISMKFDELHQLKANNWKQMDPLDKKERRAPPPVPKKPAKGPAPLIRERSL 890 900 910 920 930 940 560 570 580 590 600 610 mKIAA0 DEDGRAAARSRLAAIKNAMKGRPQQEVQAHAAAPETTKEVDKIVFDAGFFRIESPVKSFS . . : ::.:: : : : . : .. ... mKIAA4 ESSQRQEARKRLMAAKRAASVRQNSATESAESIEIYIPEAQTRL 950 960 970 980 990 773 residues in 1 query sequences 1768244 residues in 2168 library sequences Scomplib [34t11] start: Mon Mar 27 10:10:24 2006 done: Mon Mar 27 10:10:25 2006 Scan time: 0.870 Display time: 0.060 Function used was FASTA [version 3.4t11 Apr 17, 2002]