FASTA searches a protein or DNA sequence data bank
 version 3.4t11 Apr 17, 2002
Please cite:
 W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

 ../query/mKIAA0610.ptfa, 644 aa
 vs ./tmplib.26680 library

1768373 residues in  2168 sequences
  Expectation_n fit: rho(ln(x))= 6.9369+/- 0.006; mu= 7.8794+/- 0.399
 mean_var=186.9571+/-45.242, 0's: 0 Z-trim: 1  B-trim: 2 in 1/35
 Lambda= 0.0938

FASTA (3.45 Mar 2002) function [optimized, BL50 matrix (15:-5)] ktup: 2
 join: 38, opt: 26, open/ext: -10/-2, width:  16
The best scores are:                                       opt bits E(2168)
mKIAA1083  ( 614 res)   mpm04136                   ( 614)  199   39  0.0013


>>mKIAA1083  ( 614 res)   mpm04136                        (614 aa)
 initn: 123 init1: 100 opt: 199  Z-score: 157.2  bits: 39.3 E(): 0.0013
Smith-Waterman score: 223;  25.159% identity (27.719% ungapped) in 314 aa overlap (3-299:76-377)

                                           10        20        30  
mKIAA0                             RRVCGACSCALSVGSRARSGPLATRAPLEEME
                                     .:   : :: ...:. ::     ::     
mKIAA1 RNPSSFSSPLVVGFALLRLLACHLGLLFAWLCQRFSRALMAAKRS-SGT----APAPASP
          50        60        70        80        90            100

             40        50        60           70        80         
mKIAA0 REPENGEPAEIKIIKEAYEKAFMFVNKGLNTDE---LGQKEEAKNYYKQGIGHLLRGISI
         :  :  .: . ..  ...:: ... .:  ::    ::::.: ..::.:: .: .::..
mKIAA1 SPPAPGPGGEAESVRVFHKQAFEYISIALRIDEEEKAGQKEQAVEWYKKGIEELEKGIAV
              110       120       130       140       150       160

      90       100       110       120               130       140 
mKIAA0 AAAEPGHTGPAWEAARQMQQKMKETLQNVRTRLEILEK--------GLATSLRNDLQDVP
        ..  :. :  .: ::..: ::  .:  .. ::..:::           :.. :.  .. 
mKIAA1 IVT--GQ-GEQYERARRLQAKMMTNLVMAKDRLQLLEKLQPVLQFSKSQTDVYNESTNLT
                 170       180       190       200       210       

             150          160       170       180         190      
mKIAA0 KLYPEFPPKDAC---KKSPEQESVSTAPQRAEVDGSASAACAGPSGAP--SALPVPSPSC
           ..  ...    .:.:  .. .. :.   :  :.::. .:   ::  :.: . : . 
mKIAA1 CRNGHLQSESGAVPKRKDPLTHASNSLPRSKTVLKSGSAGLSGHHRAPSCSGLSMVSGAR
       220       230       240       250       260       270       

        200       210       220       230       240       250      
mKIAA0 PAEAPPAYSPQAAEGHYTVSYGTDSGEFSSVGEDFYRNRSQPPPLETLGLDADELILIPN
       :. .: : . ...     ..  .         .:.   :.    : .: ..     .. :
mKIAA1 PGPGPAATTHKGTPKPNRTNKPSTPTTAVRKKKDLKNFRNVDSNLANLIMNE----IVDN
       280       290       300       310       320           330   

        260       270       280       290        300       310     
mKIAA0 GVQIFFVNPAGEVSAPSYPGYLRIVRFLDNSLDTVLNRPP-GFLQVCDWLYPLVPDRSPV
       :. . : . ::.  : .    . :.  :   : : :  :  :.:                
mKIAA1 GTAVKFDDIAGQELAKQALQEIVILPSLRPELFTGLRAPARGLLLFGPPGNGKTMLAKAV
           340       350       360       370       380       390   

         320       330       340       350       360       370     
mKIAA0 LKCTVGAYMFPDTMLQAAGCFVGVVLSSELPEDDRELFEDLLRQMSDLRLQTKDSSEEVN
                                                                   
mKIAA1 AAESNATFFNISAASLTSKYVGEGEKLVRALFAVARELQPSIIFIDEVDSLLCERREGEH
           400       410       420       430       440       450   




644 residues in 1 query   sequences
1768373 residues in 2168 library sequences
 Scomplib [34t11]
 start: Mon Mar 27 10:24:17 2006 done: Mon Mar 27 10:24:18 2006
 Scan time:  0.840 Display time:  0.020

Function used was FASTA [version 3.4t11 Apr 17, 2002]