FASTA searches a protein or DNA sequence data bank version 3.4t11 Apr 17, 2002 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 ../query/mKIAA4214.ptfa, 691 aa vs ./tmplib.26680 library 1768326 residues in 2168 sequences Expectation_n fit: rho(ln(x))= 4.1246+/-0.00421; mu= 19.0727+/- 0.284 mean_var=80.8919+/-17.779, 0's: 0 Z-trim: 1 B-trim: 0 in 0/36 Lambda= 0.1426 FASTA (3.45 Mar 2002) function [optimized, BL50 matrix (15:-5)] ktup: 2 join: 38, opt: 26, open/ext: -10/-2, width: 16 The best scores are: opt bits E(2168) mKIAA1560 ( 848 res) mfj43284 ( 848) 492 112 3.3e-25 >>mKIAA1560 ( 848 res) mfj43284 (848 aa) initn: 419 init1: 197 opt: 492 Z-score: 544.9 bits: 111.6 E(): 3.3e-25 Smith-Waterman score: 495; 27.168% identity (31.757% ungapped) in 519 aa overlap (87-555:154-647) 60 70 80 90 100 mKIAA4 ISDFKFAMKCYTPPLYRGITPCKPGDIKSIVLSSEEINYVIKQLSRE---------SLTG :::: ... .: ... : . . mKIAA1 GWLARRLSYILFVQERDVHKGMFATSVTENVLSSSRVQEAIAEVAAELNPDGSAQQQSKA 130 140 150 160 170 180 110 120 130 140 150 160 mKIAA4 VDVLREEASEILEEMSHKLRIGAIRFFAFVLSKIFKQIFSKVCVNEEGIQKLQRAVQEH- .. ....: .::.:: . : ::. ..:: :.:...: .. ... .. .. :.. . mKIAA1 IQKVKRKARKILQEMVATVSPGMIRLTGWVLLKLFNSFFWNIQIHKGQLEMVKAATETNL 190 200 210 220 230 240 170 180 190 200 210 220 mKIAA4 PVVLLPSHRSYIDFLMLSFILYSYDLPVPVIAAGMDFLGMRVVSELLRMSGAFFMRR--- :...:: :::.::.:.:.:::. ... .: ::.: . :.. : : :.. :.::.:: mKIAA1 PLLFLPVHRSHIDYLLLTFILFCHNIKAPYIASGNN-LNIPVFSTLIHKLGGFFIRRRLD 250 260 270 280 290 300 230 240 250 260 270 280 mKIAA4 -TFGGNK--LYWAVFSEYVKTMLRCGYAPVEFFLEGTRSRAAKTLTPKFGLLNIVMEPFF : : : :: :.. .: .:: .:.::::::::..:: . :::..:.. . mKIAA1 ETPDGRKDILYRALLHGHVVELLR-QQQFLEIFLEGTRSRSGKTSCARAGLLSVVVDTLS 310 320 330 340 350 360 290 300 310 320 330 mKIAA4 KREVFDTYFVPISISYDKILEESLYAYEILGVPKPKESTTGLLKAR-RILSENFGSIHVY . . : .:..::::.:.: . : : :: :: .:: .. .. :.: .:.: ..: mKIAA1 SNTIPDILVIPVGISYDRIIE-GHYNGEQLGKPKKNESLWSVARGVIRMLRKNYGYVRVD 370 380 390 400 410 420 340 350 360 370 mKIAA4 FGDPVSLRSLAAGRLNRNT-------YNLVPRCIPQKQPEDV-----------------Q :..: ::. :. .. . :.: .:.. :.:: . mKIAA1 FAQPFSLKEYLEGQSQKPVSAPLSLEQALLPAILPSR-PNDVADEHQDLSSNESRNPADE 430 440 450 460 470 380 390 400 410 420 430 mKIAA4 AF----VTEVAYKMQLLQIENLA-LSPWLLVVTILLQNQLSMDFDALVEKTLWLKGVTQV :: ....: .. . .. : .: ... .: ... .. ...::: . .: . . mKIAA1 AFRRRLIANLAEHILFTASKSCAIMSTHIVACLLLYRHRQGIHLSTLVEDFFVMKEEVLA 480 490 500 510 520 530 440 450 460 470 480 mKIAA4 FGGFLLWPDNKLPEEVVQSSILLHSNLASLV----KDQVVLKMNSGSSQVVNGLVPEHIA : . :. :.::. .: : .: .... ::. . .. :: . mKIAA1 RDFDLGFSGNS--EDVVMHAIQLLGNCVTITHTSRKDEFFITPST--------TVPSVFE 540 550 560 570 580 490 500 510 520 530 540 mKIAA4 LLMCSAYRNQLLNIFARPSLVALALHMTPGLRKEDVFSCFSFLRNVFSDEFIFLPGNTLR : . : : .:..: ...: ... . : :. . . : :..:.: . . .: mKIAA1 L---NFYSNGVLHVFIMEAIIACSIYAV--LNKRCSGGSAGGLGNLISQEQLVRKAASL- 590 600 610 620 630 640 550 560 570 580 590 600 mKIAA4 DFEEGCYLLCKAEAMQMAGKDIILTDKGTAVLQFLTSLFKPFVESYQLLCRYLLHEEDYF :::: mKIAA1 -----CYLLSNEGTISLPCQTFYQVCHETVGKFIQYGILTVAEQDDQEDVSPGLAEQQWD 650 660 670 680 690 691 residues in 1 query sequences 1768326 residues in 2168 library sequences Scomplib [34t11] start: Mon Mar 27 11:05:21 2006 done: Mon Mar 27 11:05:22 2006 Scan time: 0.880 Display time: 0.030 Function used was FASTA [version 3.4t11 Apr 17, 2002]