FASTA searches a protein or DNA sequence data bank version 3.4t11 Apr 17, 2002 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 ../query/mKIAA1835.ptfa, 646 aa vs ./tmplib.26680 library 1768371 residues in 2168 sequences Expectation_n fit: rho(ln(x))= 8.8308+/-0.00721; mu= -3.6247+/- 0.478 mean_var=286.4379+/-68.185, 0's: 0 Z-trim: 6 B-trim: 0 in 0/36 Lambda= 0.0758 FASTA (3.45 Mar 2002) function [optimized, BL50 matrix (15:-5)] ktup: 2 join: 38, opt: 26, open/ext: -10/-2, width: 16 The best scores are: opt bits E(2168) mKIAA0835 ( 1129 res) mfj01048 (1129) 249 41 0.00065 mFLJ00348 ( 1089 res) mth00001 (1089) 243 40 0.001 >>mKIAA0835 ( 1129 res) mfj01048 (1129 aa) initn: 634 init1: 191 opt: 249 Z-score: 162.6 bits: 41.1 E(): 0.00065 Smith-Waterman score: 263; 27.778% identity (32.872% ungapped) in 342 aa overlap (182-490:59-380) 160 170 180 190 200 mKIAA1 EIPPALISLGEGLITAGAQLVELDLSDNAFGPDGVRGFEALLKSPACFTLQELK------ :: . : . .:.: ... mKIAA0 RTERHFLCRYNKMSSESDDKRARTRSKTLRGPPETTGADLSCPTPGCTGSGHVRGKYSRH 30 40 50 60 70 80 210 220 230 240 250 260 mKIAA1 --LNNCGMGIGGGKILAAALTECHRKSSAQGKPLALKVFVAGRNRLENDGAT-ALAEAFG :..: .. . : : :: : :. ...:: : .. : :...::. : .. . mKIAA0 RSLQSCPLA--KKRKLEDAETE-HLVSKRKSHPLRL-ALDEGY-RMDSDGSEDAEVKDVS 90 100 110 120 130 140 270 280 290 300 310 mKIAA1 II----GTLEEVHMPQNG---INHP----GVTALAQAFAINPLLRVINLNDNTFTEKGGV . : :::.. ..: :.:: : . . : :: ... .... :. mKIAA0 VSDESEGPLEEAEAEMSGQEEIHHPQTAEGKSLIKPHFDSNPTSSPSGFSKSSYSSYQGI 150 160 170 180 190 200 320 330 340 350 360 mKIAA1 AMAETLKTLRQVEVINFGDCLVR--SKGAVAIADAVRGGLPKLKELNLSFCEIKRDAALV .: .: .: :. . ::. : ... .. .: : .... : ..: .. mKIAA0 -IATSLLNLGQIAE----EALVKEDSVSVAKLSPTVVHQLQDEAAMGVNSDEGEKDL-FI 210 220 230 240 250 370 380 390 400 410 mKIAA1 VAEAVADKAELEKLDLNGNALGEEGCEQLQEVMDSFNMAKVLASLS----------DDEG : : . :. . ..: : : . : : . .: . :. :.: mKIAA0 QPEDVEEVIEVT------SERSQEPCPQSLKDMVSEESSKQKGVLGHEEEGEEEEEDEEE 260 270 280 290 300 310 420 430 440 450 460 470 mKIAA1 EDEDEEEEGEEDDEEEEDEEDEEDDDEEEEEQEEEEEPPQRGSGEEPA-TPLRKILDPNS :::.::::::: .::::.::.::....::::.:::: :. ::. . : ..: mKIAA0 EDEEEEEEGEEGEEEEEEEEEEEEEEDEEEEEEEEEAAPNVIFGEDTSHTSVQKASPEFR 320 330 340 350 360 370 480 490 500 510 520 530 mKIAA1 GEPAPVLSSPTPTDLSTFLSFPSPEKLLRLGPKVSVLIVQQTDTSDPEKVVSAFLKVASV : : :::: : mKIAA0 G---PELSSPKPEYSVIVEVRSDDDKDEDSRSQKSAVTDESEMYDMMTRGNLGLLEQAIA 380 390 400 410 420 >>mFLJ00348 ( 1089 res) mth00001 (1089 aa) initn: 556 init1: 177 opt: 243 Z-score: 159.2 bits: 40.5 E(): 0.001 Smith-Waterman score: 301; 29.310% identity (32.197% ungapped) in 290 aa overlap (108-394:692-958) 80 90 100 110 120 130 mKIAA1 GQLSFKGKGLKLNTAEDAKDVIKEIEEFDGLEALRLEGNTVGVEAARVIAKALEKKSELK .. . : : .: ..:...:..: .. mFLJ00 YCQSLRLDNNQFQDPVMELLGSVLSGKDCRIRKISLAENQIGNKGAKALARSLL----VN 670 680 690 700 710 140 150 160 170 180 190 mKIAA1 RCHWSDMFTGRLRSEI--PPALISLGEGLITAGAQLVELDLSDNAFGPDGVRGF-EALLK : ...: :::. ::. .:...: . :. :.:..:.. ::: :::.. mFLJ00 R----SLITLDLRSNSIGPPGAKALADAL-KINRTLTSLSLQSNVIKDDGVMCVAEALVS 720 730 740 750 760 770 200 210 220 230 240 250 mKIAA1 SPACFTLQELKLNNCGMGIGGGKILAAALTECHRKSSAQGKPLALKVFVAGRNRLENDGA . :.. :.:.. .:. :.. .: :: . . .::... . : . . :: mFLJ00 NQ---TISMLQLQKNLIGLIGAQQMADALKQNR----------SLKALMFSSNTIGDRGA 780 790 800 810 260 270 280 290 300 310 mKIAA1 TALAEAFGIIGTLEEVHMPQNGINHPGVTALAQAFAINPLLRVINLNDNTFTEKGGVAMA :::::. . ::.. . .:.:. :::.: .:. : : .:: .:... .:. :.. mFLJ00 IALAEALKVNQILENLDLQSNSISDMGVTVLMRALCSNQTLSSLNLRENSISPEGAQALT 820 830 840 850 860 870 320 330 340 350 360 370 mKIAA1 ETLKTLRQVEVINFGDCLVRSKGAVAIADAVRGGLPKLKELNLSFCEIKRDAALVVAEAV ..: .. ... :....:: ::: :: : .: .:.:.. :. :: ....:. mFLJ00 QALCRNNTLKHLDLTANLLHDRGAQAIAVAV-GENHSLTHLHLQWNFIQAGAARALGQAL 880 890 900 910 920 930 380 390 400 410 420 430 mKIAA1 ADKAELEKLDLNGNALGEEGCEQLQEVMDSFNMAKVLASLSDDEGEDEDEEEEGEEDDEE . : :::. ::.:.:: mFLJ00 QLNRTLTTLDLQENAIGDEGASSVAGALKVNTTLIALYLQVASIGSQGAQALGEALTVNR 940 950 960 970 980 990 646 residues in 1 query sequences 1768371 residues in 2168 library sequences Scomplib [34t11] start: Mon Mar 27 10:54:05 2006 done: Mon Mar 27 10:54:06 2006 Scan time: 0.860 Display time: 0.060 Function used was FASTA [version 3.4t11 Apr 17, 2002]