FASTA searches a protein or DNA sequence data bank
 version 3.4t11 Apr 17, 2002
Please cite:
 W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

 ../query/mKIAA0544.ptfa, 455 aa
 vs ./tmplib.26680 library

1768562 residues in  2168 sequences
  Expectation_n fit: rho(ln(x))= 7.1182+/-0.00602; mu= 5.4712+/- 0.402
 mean_var=205.5440+/-48.494, 0's: 0 Z-trim: 3  B-trim: 0 in 0/36
 Lambda= 0.0895

FASTA (3.45 Mar 2002) function [optimized, BL50 matrix (15:-5)] ktup: 2
 join: 37, opt: 25, open/ext: -10/-2, width:  16
The best scores are:                                       opt bits E(2168)
mKIAA1917  ( 342 res)   mbh03638                   ( 342)  295   50 2.8e-07


>>mKIAA1917  ( 342 res)   mbh03638                        (342 aa)
 initn: 294 init1: 171 opt: 295  Z-score: 223.0  bits: 50.1 E(): 2.8e-07
Smith-Waterman score: 295;  33.790% identity (37.000% ungapped) in 219 aa overlap (240-451:1-207)

     210       220       230       240        250       260        
mKIAA0 NNCPICRLPFRALLQIRAVRKKPGALSPISFSPVLA-QSVDHDEHSSSDSIPPGYEPISL
                                     :.:... :. : .:::::..:::::: .::
mKIAA1                               FNPIISSQTSDSEEHSSSENIPPGYEVVSL
                                             10        20        30

      270       280       290            300       310       320   
mKIAA0 LEALNGLRAVSPAIPSAPLYEEITYSGI-----SDGLSQASCPLAGLDRIMESGLQKGKT
       ::::::  . :::.:   .  .   ::.     :::       :. :::. . . : :  
mKIAA1 LEALNGPLTSSPAVPPLHVLGDGHLSGMLPSYGSDGYLPPVRTLSPLDRLSDCNNQ-GLK
               40        50        60        70        80          

           330       340       350       360       370       380   
mKIAA0 QSKSPDSTLRSPSFPIHEEDEEKLSEDSDAPLPPSGVELVLRESSSPESFGTEEGDEPSL
        .:: .... . :  .:::..:.   .::. :  :    : .   .:.   : :... .:
mKIAA1 LKKSLSKSISQNSSVLHEEEDERSCSESDTQL--SQRLSVQHPEEGPDV--TPESENLTL
      90       100       110       120         130         140     

           390       400       410       420        430       440  
mKIAA0 KQGSRVPSIDDVLQDGSPQHHGCSQPVPPADIYLPGWSTSMETPH-SLGTTSSPWPLLSG
       ....   ..:.    :.:     :.:  ::.  :     :: . . :  :.::    .::
mKIAA1 SSSG---AVDQSSCTGTPLSSTISSPEDPASSSLAQSVMSMASSQISTDTVSS----MSG
            150       160       170       180       190            

            450                                                    
mKIAA0 SSPEPGVAELTPF                                               
       :   ::. :                                                   
mKIAA1 SYIAPGTEEEGEALPSPRAASRAPSEGEETPAESPDSNFAGLPAGEQDAEGNDIVEEEDR
      200       210       220       230       240       250        




455 residues in 1 query   sequences
1768562 residues in 2168 library sequences
 Scomplib [34t11]
 start: Mon Mar 27 10:22:47 2006 done: Mon Mar 27 10:22:48 2006
 Scan time:  0.700 Display time:  0.010

Function used was FASTA [version 3.4t11 Apr 17, 2002]