FASTA searches a protein or DNA sequence data bank version 3.4t11 Apr 17, 2002 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 ../query/mKIAA1169.ptfa, 590 aa vs ./tmplib.26680 library 1768427 residues in 2168 sequences Expectation_n fit: rho(ln(x))= 4.4511+/-0.00408; mu= 16.5767+/- 0.273 mean_var=94.0070+/-21.599, 0's: 0 Z-trim: 3 B-trim: 0 in 0/36 Lambda= 0.1323 FASTA (3.45 Mar 2002) function [optimized, BL50 matrix (15:-5)] ktup: 2 join: 37, opt: 25, open/ext: -10/-2, width: 16 The best scores are: opt bits E(2168) mKIAA4255 ( 1460 res) mbg05755 (1460) 217 53 2.7e-07 mKIAA1123 ( 1389 res) mbg04765 (1389) 211 51 5.8e-07 >>mKIAA4255 ( 1460 res) mbg05755 (1460 aa) initn: 361 init1: 143 opt: 217 Z-score: 223.3 bits: 52.6 E(): 2.7e-07 Smith-Waterman score: 329; 22.542% identity (30.296% ungapped) in 590 aa overlap (2-531:538-1036) 10 20 mKIAA1 QSLPPFMDILLLLLFFMIIFAILGFYLFS-- :: :. .:.:. :.:::.::: ::. mKIAA4 RVLRLLRTLRPLRVISRAPGLKLVVETLISSLRPIGNIVLICCAFFIIFGILGVQLFKGK 510 520 530 540 550 560 30 40 50 60 mKIAA1 ------------TNPSDPY------------FSTLENSIVNLFVLLTTANFPDVMM---- :. .. . :..: .....:::: . .. ..:. mKIAA4 FYYCEGTDTRNITTKAECHAAHYRWVRRKYNFDNLGQALMSLFVLSSKDGWVNIMYDGLD 570 580 590 600 610 620 70 80 90 100 110 mKIAA1 -------PSYSRNPWSCVFFIVYLSIELYFIMNLLLAVVFDTFNDIEKHKFKSLLLHKRT : ..::: ..:: .: : .:..:....:: ..: :: . mKIAA4 AVGIDQQPVQNHNPWMLLYFISFLLIVSFFVLNMFVGVVVENF-----HKCR-------- 630 640 650 660 670 120 130 140 150 160 170 mKIAA1 AIQHAYGLLASQRRPAGISYRQFEGLMRFYKPRMSARERFLTFKALNQSNTPLLSLKDFY :: . : :: :. . : :. . : .:..: : .: mKIAA4 --QHQEAEEA--RR------REEKRLRRLERRRRKAQRR------------P------YY 680 690 700 180 190 200 210 220 230 mKIAA1 DIYEVAALQWKAKRNRQHWFDELPRTAFLIFKGINILVNSKAFQYFMYLVVAVNGVWILV : ...:. :. : .:. .. :. ... .: . . . mKIAA4 ADYS------HTRRS------------------IHSLCTSHYLDLFITFIICLNVITMSM 710 720 730 740 240 250 260 270 280 290 mKIAA1 ETFMLKGGNFTSKHVPWSYLVFLTIYGVELFMKVAGLGPVEYLSSGWNLFDFSVTAFAFL : . . .. . . :: .. : .:....: ..... :: .:.... .... mKIAA4 EHYNQPKS--LDEALKYCNYVFTIVFVFEAALKLVAFGFRRFFKDRWNQLDLAIVLLSIM 750 760 770 780 790 800 300 310 320 330 340 mKIAA1 GLL--------ALTLNMEPFYFIVVLRPLQLLRLFKLKKRYRNVLDTMFELLPRMASLGL :. :: .: . .. ::: ..:.:.:. .: .:::. . ::....::: mKIAA4 GIALEEIEMNAALPINPTIIRIMRVLRIARVLKLLKMATGMRALLDTVVQALPQVGNLGL 810 820 830 840 850 860 350 360 370 380 390 400 mKIAA1 TLLTFYYSFAIVGMEFFNGRLTPNCCNTSTVADAYRFINHTVGNKTKVEEGYYYLNNFDN .. ... .: .:.:.: ::: .: . . :: .: : mKIAA4 LFMLLFFIYAALGVELF-GRL--ECSEDNPC------------------EGLSRHATFTN 870 880 890 410 420 430 440 450 mKIAA1 ILNSFVTLFELTVVNNWYIIMEGV----TSQTSH-------WSRLYFMTFYIVTMVVMTI . .:.:::.... .:: ::. . : . .: : .::.:: .:.. :.. mKIAA4 FGMAFLTLFRVSTGDNWNGIMKDTLRECTREDKHCLSYLPALSPVYFVTFVLVAQFVLVN 900 910 920 930 940 950 460 470 480 490 500 510 mKIAA1 IVAFILEAFVFRMNYSRKSQDSEVDSGIVIEKEMSKEELMAVLELYREERGTSSDVTRLL .:. .: . . : . .:.:.:. : : :... .: .::. :. :: mKIAA4 VVVAVLMKHLEESNKEAR-EDAEMDAEI--ELEIAQGSTAQPPSTAQESQGTDPDTPNLL 960 970 980 990 1000 1010 520 530 540 550 560 570 mKIAA1 ----DTLSQMEKYQQNSMVFLGRRSRTKSDLSLKMYQEEIQEWYEEHAREQEQQKLRGSV ..:.: . ..:..: mKIAA4 VVRKVSVSRMLSLPNDSYMFRPVAPAAAPHSHPLQEVEMETYTGPVTSAHSPSLEPRTSF 1020 1030 1040 1050 1060 1070 >>mKIAA1123 ( 1389 res) mbg04765 (1389 aa) initn: 193 init1: 137 opt: 211 Z-score: 217.3 bits: 51.4 E(): 5.8e-07 Smith-Waterman score: 335; 22.569% identity (29.286% ungapped) in 545 aa overlap (2-492:510-983) 10 20 mKIAA1 QSLPPFMDILLLLLFFMIIFAILGFYLFS-- :: :. .:... :.:::.::: ::. mKIAA1 RVLRLLRTLRPLRVISRAQGLKLVVETLMSSLKPIGNIVVICCAFFIIFGILGVQLFKGK 480 490 500 510 520 530 30 40 50 60 mKIAA1 ------------TNPSD-----------PY-FSTLENSIVNLFVLLTTANFPDVMM---- :: :: : :..: .....:::: . .. :.:. mKIAA1 FFVCQGEDTRNITNKSDCAEASYRWVRHKYNFDNLGQALMSLFVLASKDGWVDIMYDGLD 540 550 560 570 580 590 70 80 90 100 110 mKIAA1 -------PSYSRNPWSCVFFIVYLSIELYFIMNLLLAVVFDTFNDIEKHKFKSLLLHKRT : ...::: ..:: .: : .:..:....:: ..:. ..:. . mKIAA1 AVGVDQQPIMNHNPWMLLYFISFLLIVAFFVLNMFVGVVVENFHKCRQHQEEE------- 600 610 620 630 640 650 120 130 140 150 160 170 mKIAA1 AIQHAYGLLASQRRPAGISYRQFEGLMRFYKPRMSARERFLTFKALNQSNTPLLSLKDFY :: :. . : :. : : : : . . :.. mKIAA1 ----------EARR------REEKRLKRLEKKR-----RNLMLDDVIASGSS-------- 660 670 680 180 190 200 210 220 230 mKIAA1 DIYEVAALQWKAKRNRQHWFDELPRTAFLIFKGINILVNSKAFQYFMYLVVAVNGVWILV :: . . : .... : .:. . : .:. .. :. :...: : . . mKIAA1 ---ASAASEAQCK----PYYSDYSRFRLLVHH----LCTSHYLDLFITGVIGLNVVTMAM 690 700 710 720 730 240 250 260 270 280 290 mKIAA1 ETFMLKGGNFTSKHVPWSYLVFLTIYGVELFMKVAGLGPVEYLSSGWNLFDFSVTAFAFL : . . .. .. . .: .:. .: .:....: ..... :: .:.... .... mKIAA1 EHY--QQPQILDEALKICNYIFTVIFVLESVFKLVAFGFRRFFQDRWNQLDLAIVLLSIM 740 750 760 770 780 790 300 310 320 330 340 mKIAA1 GLL--------ALTLNMEPFYFIVVLRPLQLLRLFKLKKRYRNVLDTMFELLPRMASLGL :. .: .: . .. ::: ..:.:.:. .: .:::... ::....::: mKIAA1 GITLEEIEVNASLPINPTIIRIMRVLRIARVLKLLKMAVGMRALLDTVMQALPQVGNLGL 800 810 820 830 840 850 350 360 370 380 390 400 mKIAA1 TLLTFYYSFAIVGMEFFNGRLTPNCCNTSTVADAYRFINHTVGNKTKVEEGYYYLNNFDN .. ... :: .:.:.: : : .: ..:. :: .: : mKIAA1 LFMLLFFIFAALGVELF-GDL--EC------------------DETHPCEGLGRHATFRN 860 870 880 410 420 430 440 450 mKIAA1 ILNSFVTLFELTVVNNWYIIMEGV--------TSQTSHWSRLYFMTFYIVTMVVMTIIVA . .:.:::.... .:: ::. . : .. : .::..: .... :.. .: mKIAA1 FGMAFLTLFRVSTGDNWNGIMKDTLRDCDQESTCYNTVISPIYFVSFVLTAQFVLVNVVI 890 900 910 920 930 940 460 470 480 490 500 510 mKIAA1 FILEAFVFRMNYSRKSQDSEVDSGIVIE-KEMSKEELMAVLELYREERGTSSDVTRLLDT .: . . : : ...:... . .: : .: . mKIAA1 AVLMKHLEESNKEAK-EEAELEAELELEMKTLSPQPHSPLGSPFLWPGVEGVNSPDSPKP 950 960 970 980 990 1000 520 530 540 550 560 570 mKIAA1 LSQMEKYQQNSMVFLGRRSRTKSDLSLKMYQEEIQEWYEEHAREQEQQKLRGSVPGPAAQ mKIAA1 GAPHTTAHIGAASSGFSLEHPTMVPHTEEGPVPLGPDLLTVRKSGVSRTHSLPNDSYMCR 1010 1020 1030 1040 1050 1060 590 residues in 1 query sequences 1768427 residues in 2168 library sequences Scomplib [34t11] start: Mon Mar 27 10:37:39 2006 done: Mon Mar 27 10:37:40 2006 Scan time: 0.740 Display time: 0.090 Function used was FASTA [version 3.4t11 Apr 17, 2002]