FASTA searches a protein or DNA sequence data bank
 version 3.4t11 Apr 17, 2002
Please cite:
 W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

 ../query/mKIAA0123.ptfa, 509 aa
 vs ./tmplib.26680 library

1768508 residues in  2168 sequences
  Expectation_n fit: rho(ln(x))= 4.2337+/-0.00432; mu= 18.3166+/- 0.291
 mean_var=76.8507+/-16.935, 0's: 0 Z-trim: 4  B-trim: 0 in 0/36
 Lambda= 0.1463

FASTA (3.45 Mar 2002) function [optimized, BL50 matrix (15:-5)] ktup: 2
 join: 37, opt: 25, open/ext: -10/-2, width:  16
The best scores are:                                       opt bits E(2168)
mKIAA4016  ( 465 res)   mbg09509                   ( 465)  408   95 9.5e-21


>>mKIAA4016  ( 465 res)   mbg09509                        (465 aa)
 initn: 550 init1: 190 opt: 408  Z-score: 464.9  bits: 95.4 E(): 9.5e-21
Smith-Waterman score: 611;  30.617% identity (33.095% ungapped) in 454 aa overlap (50-494:32-460)

      20        30        40        50        60        70         
mKIAA0 GATYPNIPLSSPLPGVPKPIFATVDGQEKFETKVTTLDNGLRVASQNKFGQFCTVGILIN
                                     ::.:. :::::::::...    ::::. :.
mKIAA4 LLRTRRSPALLRLPALRGTATFAQALQSVPETQVSILDNGLRVASEQSSHATCTVGVWID
              10        20        30        40        50        60 

      80        90       100       110       120       130         
mKIAA0 SGSRYEAKYLSGIAHFLEKLAFSSTARFDSKDEILLTLEKHGGICDCQTSRDTTMYAVSA
       .:::::..  .: ..:::.:::..:    . . .   .:. :.  .  ..:. : : ..:
mKIAA4 AGSRYETEKNNGAGYFLEHLAFKGTKNRPG-NALEKEVESIGAHLNAYSTREHTAYLIKA
              70        80        90        100       110       120

     140       150       160       170         180       190       
mKIAA0 DSKGLDTVVDLLADVVLHPRLTDEEIEMTRMAVQFELE--DLNMRPDPEPLLTEMIHEAA
        :: :  ::.::::.: .  : : .::  : ..  :..  : .:    . .. ...: .:
mKIAA4 LSKDLPKVVELLADIVQNSSLEDSQIEKERDVILREMQENDASM----QNVVFDYLHATA
              130       140       150       160           170      

       200       210       220       230       240        250      
mKIAA0 FRENTVGLHRFCPVENIAKIDREVLHSYLKNYYTPDRMVLAGVG-VEHEHLVECARKYLV
       :. . ..     : ::. ...:  : .::. .:   :::::..: :::..:.. :.:.: 
mKIAA4 FQGTPLAQAVEGPSENVRRLSRTDLTDYLNRHYKAPRMVLAAAGGVEHQQLLDLAQKHLS
        180       190       200       210       220       230      

        260          270       280       290       300       310   
mKIAA0 GAEPAW---GAPGTVDVDRSVAQYTGGIIKVERDMSNVSLGPTPIPELTHIMVGLESCSF
       ..  ..   ..:: .       ..::. :. .::          .: :.:. ...:. ..
mKIAA4 SVSRVYEEDAVPGLTPC-----RFTGSEIR-HRD--------DALP-LAHVAIAVEGPGW
        240       250            260                 270       280 

           320       330       340        350       360       370  
mKIAA0 LEDDFIPFAVLNMMMGGGGSFSAGGPGKGMFSRLY-LNVLNRHHWMYNATSYHHSYEDTG
        . : . . : : ..:     . :: :  . : :  . : :.    ..  ... :: :::
mKIAA4 ANPDNVTLQVANAIIGHYDC-TYGG-GVHLSSPLASVAVANKLCQSFQ--TFNISYSDTG
             290       300         310       320         330       

            380       390       400       410       420       430  
mKIAA0 LLCIHASADPRQVREMVEIITKEFILMGRTVDLVELERAKTQLMSMLMMNLESRPVIFED
       ::  :   :  .. .:: ..  ... .  ..   :. :.:. : . :. .:..   . ::
mKIAA4 LLGAHFVCDAMSIDDMVFFLQGQWMRLCTSATESEVTRGKNILRNALVSHLDGTTPVCED
       340       350       360       370       380       390       

            440        450       460       470        480       490
mKIAA0 VGRQVLATHSRKLP-HELCTLIRNVKPEDIKRVASKMLRGK-PAVAALGDLTDLPTYEHI
       .::..: :..:..:  :  . :..:  . .. . ::..  . ::::. : . .:: :..:
mKIAA4 IGRSLL-TYGRRIPLAEWESRIQEVDAQMLRDICSKYFYDQCPAVAGYGPIEQLPDYNRI
       400        410       420       430       440       450      

              500         
mKIAA0 QAALSSRNGHLPRSYRLFR
       ....               
mKIAA4 RSGMFWLRF          
        460               




509 residues in 1 query   sequences
1768508 residues in 2168 library sequences
 Scomplib [34t11]
 start: Mon Mar 27 10:12:36 2006 done: Mon Mar 27 10:12:37 2006
 Scan time:  0.700 Display time:  0.020

Function used was FASTA [version 3.4t11 Apr 17, 2002]