# /usr/local/bin/fasta34_t -T 4 -b50 -d10 -E0.01 -H -O./tmp/mph00083.fasta.nr -Q ../query/mKIAA4234.ptfa /cdna4/rodent/rouge_util/new.rouge/nfasta/nr 2 FASTA searches a protein or DNA sequence data bank version 34.26.5 April 26, 2007 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 mKIAA4234, 105 aa vs /cdna4/rodent/rouge_util/new.rouge/nfasta/nr library 2727779818 residues in 7921681 sequences statistics sampled from 60000 to 7893678 sequences Expectation_n fit: rho(ln(x))= 4.0945+/-0.000183; mu= 8.3539+/- 0.010 mean_var=66.4595+/-12.611, 0's: 51 Z-trim: 225 B-trim: 0 in 0/67 Lambda= 0.157324 FASTA (3.5 Sept 2006) function [optimized, BL50 matrix (15:-5)] ktup: 2 join: 36, opt: 24, open/ext: -10/-2, width: 16 The best scores are: opt bits E(7921681) gi|26371678|dbj|BAB27223.2| unnamed protein produc ( 137) 788 187.0 5.7e-46 gi|22760008|dbj|BAC11033.1| unnamed protein produc ( 509) 788 187.7 1.3e-45 gi|33990803|gb|AAH23985.2| ZNF777 protein [Homo sa ( 518) 788 187.7 1.3e-45 gi|151553744|gb|AAI49402.1| ZNF777 protein [Bos ta ( 532) 788 187.7 1.4e-45 gi|109068803|ref|XP_001095994.1| PREDICTED: simila ( 831) 788 188.0 1.8e-45 gi|194666574|ref|XP_595668.4| PREDICTED: zinc fing ( 832) 788 188.0 1.8e-45 gi|148666102|gb|EDK98518.1| mCG140820 [Mus musculu ( 841) 788 188.0 1.8e-45 gi|223462599|gb|AAI50872.1| Zinc finger protein 77 ( 885) 788 188.0 1.9e-45 gi|73978949|ref|XP_539902.2| PREDICTED: similar to ( 925) 788 188.0 1.9e-45 gi|149466104|ref|XP_001519021.1| PREDICTED: simila ( 685) 783 186.7 3.5e-45 gi|194210092|ref|XP_001916084.1| PREDICTED: zinc f ( 828) 779 185.9 7.5e-45 gi|118085438|ref|XP_001232239.1| PREDICTED: hypoth ( 518) 706 169.1 5.4e-40 gi|224044497|ref|XP_002191287.1| PREDICTED: simila ( 654) 700 167.9 1.6e-39 gi|149466112|ref|XP_001519083.1| PREDICTED: simila ( 659) 510 124.7 1.5e-26 gi|126341044|ref|XP_001368783.1| PREDICTED: simila ( 644) 504 123.4 3.9e-26 gi|194210088|ref|XP_001915808.1| PREDICTED: simila ( 609) 498 122.0 9.7e-26 gi|18614024|gb|AAK92788.1| zinc finger DNA binding ( 471) 494 120.9 1.5e-25 gi|67972020|dbj|BAE02352.1| unnamed protein produc ( 471) 494 120.9 1.5e-25 gi|114616657|ref|XP_001166362.1| PREDICTED: zinc f ( 635) 494 121.1 1.9e-25 gi|23396984|sp|Q8TD17.1|ZN398_HUMAN RecName: Full= ( 642) 494 121.1 1.9e-25 gi|158254430|dbj|BAF83188.1| unnamed protein produ ( 642) 494 121.1 1.9e-25 gi|114616653|ref|XP_001166485.1| PREDICTED: zinc f ( 642) 494 121.1 1.9e-25 gi|114616651|ref|XP_001166405.1| PREDICTED: zinc f ( 645) 494 121.1 1.9e-25 gi|119600466|gb|EAW80060.1| zinc finger protein 39 ( 645) 494 121.1 1.9e-25 gi|194377916|dbj|BAG63321.1| unnamed protein produ ( 647) 494 121.1 1.9e-25 gi|114616655|ref|XP_527957.2| PREDICTED: zinc fing ( 647) 494 121.1 1.9e-25 gi|26347089|dbj|BAC37193.1| unnamed protein produc ( 511) 493 120.7 1.9e-25 gi|189528501|ref|XP_001921672.1| PREDICTED: simila ( 675) 494 121.1 1.9e-25 gi|194385666|dbj|BAG65208.1| unnamed protein produ ( 337) 491 120.1 2e-25 gi|26349029|dbj|BAC38154.1| unnamed protein produc ( 643) 493 120.9 2.2e-25 gi|74206956|dbj|BAE33275.1| unnamed protein produc ( 643) 493 120.9 2.2e-25 gi|109730169|gb|AAI12383.1| Zinc finger protein 39 ( 643) 493 120.9 2.2e-25 gi|149033485|gb|EDL88286.1| similar to zinc finger ( 643) 491 120.4 3e-25 gi|194666567|ref|XP_603912.4| PREDICTED: similar t ( 640) 488 119.7 4.8e-25 gi|221045104|dbj|BAH14229.1| unnamed protein produ ( 642) 488 119.7 4.8e-25 gi|114679385|ref|XP_001145156.1| PREDICTED: hypoth ( 648) 488 119.7 4.9e-25 gi|23396985|sp|Q8TF45.2|ZN418_HUMAN RecName: Full= ( 676) 488 119.8 5e-25 gi|16551429|dbj|BAB71096.1| unnamed protein produc ( 676) 488 119.8 5e-25 gi|119592948|gb|EAW72542.1| zinc finger protein 41 ( 677) 488 119.8 5e-25 gi|221039632|dbj|BAH11579.1| unnamed protein produ ( 697) 488 119.8 5.1e-25 gi|34534815|dbj|BAC87119.1| unnamed protein produc ( 476) 484 118.7 7.5e-25 gi|119592938|gb|EAW72532.1| hypothetical protein F ( 518) 484 118.7 7.9e-25 gi|74757345|sp|Q68DI1.1|ZN776_HUMAN RecName: Full= ( 518) 484 118.7 7.9e-25 gi|194389142|dbj|BAG61588.1| unnamed protein produ ( 518) 484 118.7 7.9e-25 gi|109126280|ref|XP_001099887.1| PREDICTED: simila ( 613) 483 118.6 1e-24 gi|126343187|ref|XP_001374758.1| PREDICTED: simila ( 898) 481 118.3 1.8e-24 gi|126330324|ref|XP_001380391.1| PREDICTED: simila ( 846) 480 118.1 2e-24 gi|62857445|ref|NP_001015980.1| hypothetical prote ( 582) 478 117.4 2.2e-24 gi|109496622|ref|XP_001072631.1| PREDICTED: simila ( 780) 479 117.8 2.3e-24 gi|89272062|emb|CAJ82603.1| novel zinc finger prot ( 624) 478 117.4 2.3e-24 >>gi|26371678|dbj|BAB27223.2| unnamed protein product [M (137 aa) initn: 788 init1: 788 opt: 788 Z-score: 981.6 bits: 187.0 E(): 5.7e-46 Smith-Waterman score: 788; 100.000% identity (100.000% similar) in 105 aa overlap (1-105:33-137) 10 20 30 mKIAA4 CEKSFSEKSKLTNHCRVHSRERPHACPECG :::::::::::::::::::::::::::::: gi|263 SLCGKSFSRPSHLLRHQRTHTGERPFKCPECEKSFSEKSKLTNHCRVHSRERPHACPECG 10 20 30 40 50 60 40 50 60 70 80 90 mKIAA4 KSFIRKHHLLEHRRIHTGERPYHCAECGKRFTQKHHLLEHQRAHTGERPYPCTHCAKCFR :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|263 KSFIRKHHLLEHRRIHTGERPYHCAECGKRFTQKHHLLEHQRAHTGERPYPCTHCAKCFR 70 80 90 100 110 120 100 mKIAA4 YKQSLKYHLRTHTGE ::::::::::::::: gi|263 YKQSLKYHLRTHTGE 130 >>gi|22760008|dbj|BAC11033.1| unnamed protein product [H (509 aa) initn: 788 init1: 788 opt: 788 Z-score: 975.1 bits: 187.7 E(): 1.3e-45 Smith-Waterman score: 788; 100.000% identity (100.000% similar) in 105 aa overlap (1-105:405-509) 10 20 30 mKIAA4 CEKSFSEKSKLTNHCRVHSRERPHACPECG :::::::::::::::::::::::::::::: gi|227 SLCGKSFSRPSHLLRHQRTHTGERPFKCPECEKSFSEKSKLTNHCRVHSRERPHACPECG 380 390 400 410 420 430 40 50 60 70 80 90 mKIAA4 KSFIRKHHLLEHRRIHTGERPYHCAECGKRFTQKHHLLEHQRAHTGERPYPCTHCAKCFR :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|227 KSFIRKHHLLEHRRIHTGERPYHCAECGKRFTQKHHLLEHQRAHTGERPYPCTHCAKCFR 440 450 460 470 480 490 100 mKIAA4 YKQSLKYHLRTHTGE ::::::::::::::: gi|227 YKQSLKYHLRTHTGE 500 >>gi|33990803|gb|AAH23985.2| ZNF777 protein [Homo sapien (518 aa) initn: 788 init1: 788 opt: 788 Z-score: 975.0 bits: 187.7 E(): 1.3e-45 Smith-Waterman score: 788; 100.000% identity (100.000% similar) in 105 aa overlap (1-105:414-518) 10 20 30 mKIAA4 CEKSFSEKSKLTNHCRVHSRERPHACPECG :::::::::::::::::::::::::::::: gi|339 SLCGKSFSRPSHLLRHQRTHTGERPFKCPECEKSFSEKSKLTNHCRVHSRERPHACPECG 390 400 410 420 430 440 40 50 60 70 80 90 mKIAA4 KSFIRKHHLLEHRRIHTGERPYHCAECGKRFTQKHHLLEHQRAHTGERPYPCTHCAKCFR :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|339 KSFIRKHHLLEHRRIHTGERPYHCAECGKRFTQKHHLLEHQRAHTGERPYPCTHCAKCFR 450 460 470 480 490 500 100 mKIAA4 YKQSLKYHLRTHTGE ::::::::::::::: gi|339 YKQSLKYHLRTHTGE 510 >>gi|151553744|gb|AAI49402.1| ZNF777 protein [Bos taurus (532 aa) initn: 788 init1: 788 opt: 788 Z-score: 974.8 bits: 187.7 E(): 1.4e-45 Smith-Waterman score: 788; 100.000% identity (100.000% similar) in 105 aa overlap (1-105:428-532) 10 20 30 mKIAA4 CEKSFSEKSKLTNHCRVHSRERPHACPECG :::::::::::::::::::::::::::::: gi|151 SLCGKSFSRPSHLLRHQRTHTGERPFKCPECEKSFSEKSKLTNHCRVHSRERPHACPECG 400 410 420 430 440 450 40 50 60 70 80 90 mKIAA4 KSFIRKHHLLEHRRIHTGERPYHCAECGKRFTQKHHLLEHQRAHTGERPYPCTHCAKCFR :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|151 KSFIRKHHLLEHRRIHTGERPYHCAECGKRFTQKHHLLEHQRAHTGERPYPCTHCAKCFR 460 470 480 490 500 510 100 mKIAA4 YKQSLKYHLRTHTGE ::::::::::::::: gi|151 YKQSLKYHLRTHTGE 520 530 >>gi|109068803|ref|XP_001095994.1| PREDICTED: similar to (831 aa) initn: 788 init1: 788 opt: 788 Z-score: 972.6 bits: 188.0 E(): 1.8e-45 Smith-Waterman score: 788; 100.000% identity (100.000% similar) in 105 aa overlap (1-105:727-831) 10 20 30 mKIAA4 CEKSFSEKSKLTNHCRVHSRERPHACPECG :::::::::::::::::::::::::::::: gi|109 SLCGKSFSRPSHLLRHQRTHTGERPFKCPECEKSFSEKSKLTNHCRVHSRERPHACPECG 700 710 720 730 740 750 40 50 60 70 80 90 mKIAA4 KSFIRKHHLLEHRRIHTGERPYHCAECGKRFTQKHHLLEHQRAHTGERPYPCTHCAKCFR :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|109 KSFIRKHHLLEHRRIHTGERPYHCAECGKRFTQKHHLLEHQRAHTGERPYPCTHCAKCFR 760 770 780 790 800 810 100 mKIAA4 YKQSLKYHLRTHTGE ::::::::::::::: gi|109 YKQSLKYHLRTHTGE 820 830 >>gi|194666574|ref|XP_595668.4| PREDICTED: zinc finger p (832 aa) initn: 788 init1: 788 opt: 788 Z-score: 972.6 bits: 188.0 E(): 1.8e-45 Smith-Waterman score: 788; 100.000% identity (100.000% similar) in 105 aa overlap (1-105:728-832) 10 20 30 mKIAA4 CEKSFSEKSKLTNHCRVHSRERPHACPECG :::::::::::::::::::::::::::::: gi|194 SLCGKSFSRPSHLLRHQRTHTGERPFKCPECEKSFSEKSKLTNHCRVHSRERPHACPECG 700 710 720 730 740 750 40 50 60 70 80 90 mKIAA4 KSFIRKHHLLEHRRIHTGERPYHCAECGKRFTQKHHLLEHQRAHTGERPYPCTHCAKCFR :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|194 KSFIRKHHLLEHRRIHTGERPYHCAECGKRFTQKHHLLEHQRAHTGERPYPCTHCAKCFR 760 770 780 790 800 810 100 mKIAA4 YKQSLKYHLRTHTGE ::::::::::::::: gi|194 YKQSLKYHLRTHTGE 820 830 >>gi|148666102|gb|EDK98518.1| mCG140820 [Mus musculus] (841 aa) initn: 788 init1: 788 opt: 788 Z-score: 972.5 bits: 188.0 E(): 1.8e-45 Smith-Waterman score: 788; 100.000% identity (100.000% similar) in 105 aa overlap (1-105:737-841) 10 20 30 mKIAA4 CEKSFSEKSKLTNHCRVHSRERPHACPECG :::::::::::::::::::::::::::::: gi|148 SLCGKSFSRPSHLLRHQRTHTGERPFKCPECEKSFSEKSKLTNHCRVHSRERPHACPECG 710 720 730 740 750 760 40 50 60 70 80 90 mKIAA4 KSFIRKHHLLEHRRIHTGERPYHCAECGKRFTQKHHLLEHQRAHTGERPYPCTHCAKCFR :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|148 KSFIRKHHLLEHRRIHTGERPYHCAECGKRFTQKHHLLEHQRAHTGERPYPCTHCAKCFR 770 780 790 800 810 820 100 mKIAA4 YKQSLKYHLRTHTGE ::::::::::::::: gi|148 YKQSLKYHLRTHTGE 830 840 >>gi|223462599|gb|AAI50872.1| Zinc finger protein 777 [M (885 aa) initn: 788 init1: 788 opt: 788 Z-score: 972.3 bits: 188.0 E(): 1.9e-45 Smith-Waterman score: 788; 100.000% identity (100.000% similar) in 105 aa overlap (1-105:781-885) 10 20 30 mKIAA4 CEKSFSEKSKLTNHCRVHSRERPHACPECG :::::::::::::::::::::::::::::: gi|223 SLCGKSFSRPSHLLRHQRTHTGERPFKCPECEKSFSEKSKLTNHCRVHSRERPHACPECG 760 770 780 790 800 810 40 50 60 70 80 90 mKIAA4 KSFIRKHHLLEHRRIHTGERPYHCAECGKRFTQKHHLLEHQRAHTGERPYPCTHCAKCFR :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|223 KSFIRKHHLLEHRRIHTGERPYHCAECGKRFTQKHHLLEHQRAHTGERPYPCTHCAKCFR 820 830 840 850 860 870 100 mKIAA4 YKQSLKYHLRTHTGE ::::::::::::::: gi|223 YKQSLKYHLRTHTGE 880 >>gi|73978949|ref|XP_539902.2| PREDICTED: similar to zin (925 aa) initn: 788 init1: 788 opt: 788 Z-score: 972.1 bits: 188.0 E(): 1.9e-45 Smith-Waterman score: 788; 100.000% identity (100.000% similar) in 105 aa overlap (1-105:821-925) 10 20 30 mKIAA4 CEKSFSEKSKLTNHCRVHSRERPHACPECG :::::::::::::::::::::::::::::: gi|739 SLCGKSFSRPSHLLRHQRTHTGERPFKCPECEKSFSEKSKLTNHCRVHSRERPHACPECG 800 810 820 830 840 850 40 50 60 70 80 90 mKIAA4 KSFIRKHHLLEHRRIHTGERPYHCAECGKRFTQKHHLLEHQRAHTGERPYPCTHCAKCFR :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|739 KSFIRKHHLLEHRRIHTGERPYHCAECGKRFTQKHHLLEHQRAHTGERPYPCTHCAKCFR 860 870 880 890 900 910 100 mKIAA4 YKQSLKYHLRTHTGE ::::::::::::::: gi|739 YKQSLKYHLRTHTGE 920 >>gi|149466104|ref|XP_001519021.1| PREDICTED: similar to (685 aa) initn: 783 init1: 783 opt: 783 Z-score: 967.4 bits: 186.7 E(): 3.5e-45 Smith-Waterman score: 783; 99.048% identity (100.000% similar) in 105 aa overlap (1-105:581-685) 10 20 30 mKIAA4 CEKSFSEKSKLTNHCRVHSRERPHACPECG :::::::::::::::::::::::::::::: gi|149 SLCGKSFSRPSHLLRHQRTHTGERPFKCPECEKSFSEKSKLTNHCRVHSRERPHACPECG 560 570 580 590 600 610 40 50 60 70 80 90 mKIAA4 KSFIRKHHLLEHRRIHTGERPYHCAECGKRFTQKHHLLEHQRAHTGERPYPCTHCAKCFR :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|149 KSFIRKHHLLEHRRIHTGERPYHCAECGKRFTQKHHLLEHQRAHTGERPYPCTHCAKCFR 620 630 640 650 660 670 100 mKIAA4 YKQSLKYHLRTHTGE ::::::::::::.:: gi|149 YKQSLKYHLRTHAGE 680 105 residues in 1 query sequences 2727779818 residues in 7921681 library sequences Tcomplib [34.26] (2 proc) start: Wed Mar 18 06:08:48 2009 done: Wed Mar 18 06:12:20 2009 Total Scan time: 494.880 Total Display time: 0.020 Function used was FASTA [version 34.26.5 April 26, 2007]