FASTA searches a protein or DNA sequence data bank version 3.4t11 Apr 17, 2002 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 ../query/mKIAA1619.ptfa, 240 aa vs ./tmplib.26680 library 1768777 residues in 2168 sequences Expectation_n fit: rho(ln(x))= 3.2430+/-0.00396; mu= 21.2467+/- 0.266 mean_var=67.1926+/-15.442, 0's: 0 Z-trim: 6 B-trim: 189 in 2/34 Lambda= 0.1565 FASTA (3.45 Mar 2002) function [optimized, BL50 matrix (15:-5)] ktup: 2 join: 36, opt: 24, open/ext: -10/-2, width: 16 The best scores are: opt bits E(2168) mKIAA4225 ( 868 res) mfj58259 ( 868) 508 123 3.2e-29 mKIAA1745 ( 871 res) mid29072 ( 871) 402 99 5.1e-22 mKIAA1739 ( 755 res) mtj00724 ( 755) 364 91 1.8e-19 mKIAA4055 ( 794 res) mfj06069 ( 794) 364 91 1.8e-19 mKIAA1479 ( 1009 res) mbg01940 (1009) 236 62 1e-10 >>mKIAA4225 ( 868 res) mfj58259 (868 aa) initn: 376 init1: 376 opt: 508 Z-score: 617.0 bits: 123.4 E(): 3.2e-29 Smith-Waterman score: 508; 41.361% identity (42.021% ungapped) in 191 aa overlap (50-239:26-214) 20 30 40 50 60 70 mKIAA1 LNFRRKMWGRLWPLLFSFLTVTAVPGPSLRRPSRELDATPRLTISYEELSQIRHFKGQTQ : . . .:::: . :.. .. : mKIAA4 RPRWPLPMRMCAPVRGLFLALVVVLRTAVAFAPVPRLTWEHGEVGLVQFHKPGIF 10 20 30 40 50 80 90 100 110 120 130 mKIAA1 NYSTLLLEEASERLLVGARGALFSLSARDIRDRTHKEIHWEASPEMQSKCHQKGKNNQTE :::.::. : .. : :::: :.:...: .: .. : :..:..: . .::: .:::..::: mKIAA4 NYSALLMSEDKDTLYVGAREAVFAVNALNISEKQH-EVYWKVSEDKKSKCAEKGKSKQTE 60 70 80 90 100 110 140 150 160 170 180 190 mKIAA1 CFNHVRFLQRLNATHFYACGTHAFQPLCAAIDAETFILPTSFEEGKEKCPYDPARGFTGL :.:..: :: :..: .:.:::.:::: : .. .: . . :.:: .::.:::...:.. mKIAA4 CLNYIRVLQPLSSTSLYVCGTNAFQPTCDHLNLTSFKFLGKSEDGKGRCPFDPAHSYTSV 120 130 140 150 160 170 200 210 220 230 240 mKIAA1 IIDGGLYTATRYEFR-SIPDIRRSRHPHSLRTEEAPMHWLNG .. : ::..: :.: : : : :. :::: : . ::: mKIAA4 MVGGELYSGTSYNFLGSEPIISRNSSHSPLRTEYA-IPWLNEPSFVFADVIQKSPDGPEG 180 190 200 210 220 230 mKIAA4 EDDKVYFFFTEVSVEYEFVFKLMIPRVARVCKGDQGGLRTLQKKWTSFLKARLICSKPDS 240 250 260 270 280 290 >>mKIAA1745 ( 871 res) mid29072 (871 aa) initn: 368 init1: 157 opt: 402 Z-score: 487.7 bits: 99.5 E(): 5.1e-22 Smith-Waterman score: 402; 33.475% identity (36.744% ungapped) in 236 aa overlap (14-238:45-270) 10 20 30 40 mKIAA1 LLFPSPPVTLLGCPRGLVGLNFRRKMWGRLWPLLFSFLTVTAV ::. .: : . : ::. .: . .. mKIAA1 GRTAGRGSSLRFHLSNLSRRRTPLPAAVRAPRAAMGRASRSAVLRRALLLLLLLLLLRTT 20 30 40 50 60 70 50 60 70 80 90 100 mKIAA1 PGPSLRRPSRELDATPRLTISY-EELSQIRHFKGQT-QNYSTLLLEEASERLLVGARGAL .: : ::... : ::.:.... .::..::: . .. : :::: :: mKIAA1 T-------TRALG--PRISVPLGSEERLIRKFEAENISNYTALLLSQDGKTLYVGAREAL 80 90 100 110 120 110 120 130 140 150 mKIAA1 FSLSARD--IRDRTHKEIHWEASPEMQSKCHQKGKNNQTECFNHVRFLQRLNATHFYACG :.:.. . ..:. : :. . ...: :::. . .: :....: ::..:. .:: mKIAA1 FALNSNLSFLPGGEYQELLWSADADRKQQCSFKGKDPKRDCQNYIKILLPLNSSHLLTCG 130 140 150 160 170 180 160 170 180 190 200 210 mKIAA1 THAFQPLCAAIDAETFILPTS------FEEGKEKCPYDPARGFTGLIIDGGLYTATRYEF : ::.:::: : .: : . .:.:: .::.:: :.:..:: :::.: : mKIAA1 TAAFSPLCAYIHIASFTLAQDEAGNVILEDGKGRCPFDPNFKSTALVVDGELYTGTVSSF 190 200 210 220 230 240 220 230 240 mKIAA1 RSI-PDIRRSRHPHSLRTEEAPMHWLNG .. : : ::. . .:: . ..::. mKIAA1 QGNDPAISRSQSSRPTKTESS-LNWLQDPAFVASAYVPESLGSPIGDDDKIYFFFSETGQ 250 260 270 280 290 300 >>mKIAA1739 ( 755 res) mtj00724 (755 aa) initn: 332 init1: 187 opt: 364 Z-score: 441.9 bits: 90.8 E(): 1.8e-19 Smith-Waterman score: 364; 53.097% identity (56.604% ungapped) in 113 aa overlap (131-239:23-132) 110 120 130 140 150 160 mKIAA1 LFSLSARDIRDRTHKEIHWEASPEMQSKCHQKGKNNQTECFNHVRFLQRLNATHFYACGT .::. :::::: .:::: :..:.:.::: mKIAA1 RLWSCKERSLGRLQLRRKLNVPRKGRA-QTECFNFIRFLQPYNSSHLYVCGT 10 20 30 40 50 170 180 190 200 210 mKIAA1 HAFQPLCAAIDAETFILPTS-FEEGKEKCPYDPARGFTGLIIDGGLYTATRYEFRSI-PD .:::: :. :. :: : . ::.:: :::::::.: :::..:: ::.:: .: . : mKIAA1 YAFQPKCTYINMLTFTLDRAEFEDGKGKCPYDPAKGHTGLLVDGELYSATLNNFLGTEPV 60 70 80 90 100 110 220 230 240 mKIAA1 IRR--SRHPHSLRTEEAPMHWLNG : : . : ::..:: . ::: mKIAA1 ILRYMGTH-HSIKTEYLAF-WLNEPHFVGSAFVPESVGSFTGDDDKIYFFFSERAVEYDC 120 130 140 150 160 >>mKIAA4055 ( 794 res) mfj06069 (794 aa) initn: 327 init1: 158 opt: 364 Z-score: 441.7 bits: 90.9 E(): 1.8e-19 Smith-Waterman score: 413; 37.374% identity (40.659% ungapped) in 198 aa overlap (56-239:49-244) 30 40 50 60 70 80 mKIAA1 MWGRLWPLLFSFLTVTAVPGPSLRRPSRELDATPRLTISYEEL---SQIRHFKG--QTQN . .::: .::.:. ... :.: .... mKIAA4 SVCSMGWFTGIACLFWGVLLTARANYANGKNNVPRLKLSYKEMLESNNVITFNGLANSSS 20 30 40 50 60 70 90 100 110 120 130 140 mKIAA1 YSTLLLEEASERLLVGARGALFSLSARDIRDRTHKEIHWEASPEMQSKCHQKGKNNQTEC : :.::.: :: :::. .::.. .:.: ..: : .: ...:. ::. :: mKIAA4 YHTFLLDEERSRLYVGAKDHIFSFNLVNIKD--FQKIVWPVSYTRRDECKWAGKDILKEC 80 90 100 110 120 130 150 160 170 180 190 mKIAA1 FNHVRFLQRLNATHFYACGTHAFQPLCAAIDA------ETFILPTS-FEEGKEKCPYDPA : .. :. : ::.::::: ::.:.:. :.. . : : : ::.:. : :::: mKIAA4 ANFIKVLEAYNQTHLYACGTGAFHPICTYIEVGHHPEDNIFKLQDSHFENGRGKSPYDPK 140 150 160 170 180 190 200 210 220 230 240 mKIAA1 RGFTGLIIDGGLYTATRYEF--RSIPDIRRSRHPHSLRTEEAPMHWLNG ..:.::: ::..: .: :.. .: : : .:::. .::: mKIAA4 LLTASLLIDGELYSGTAADFMGRDFAIFRTLGHHHPIRTEQHDSRWLNDPRFISAHLIPE 200 210 220 230 240 250 mKIAA4 SDNPEDDKVYFFFRENAIDGEHSGKATHARIGQICKNDFGGHRSLVNKWTTFLKARLICS 260 270 280 290 300 310 >>mKIAA1479 ( 1009 res) mbg01940 (1009 aa) initn: 153 init1: 153 opt: 236 Z-score: 284.6 bits: 62.1 E(): 1e-10 Smith-Waterman score: 239; 26.906% identity (29.126% ungapped) in 223 aa overlap (31-238:9-229) 10 20 30 40 50 mKIAA1 LLFPSPPVTLLGCPRGLVGLNFRRKMWGRLWP---LLFSFLTVTAVPGPSLRRPSRELDA :: .:. .. : . :: : : mKIAA1 GGGAQISSWPTMGFLLLWFCVLFLLVSRLRAVSFPEDD 10 20 30 60 70 80 90 100 110 mKIAA1 TPRLTISYEELSQIRHFKG-----QTQNYSTL-LLEEASERLLVGARGALFSLSARDIRD : :..:. : :.: ..:. . :. . . : ...: ..... .: . mKIAA1 EPLNTVDYHYSRQYPVFRGRPSGNESQHRLDFQLMLKIRDTLYIAGRDQVYTVNLNEIPQ 40 50 60 70 80 90 120 130 140 150 160 mKIAA1 RT---HKEIHWEASPEMQSKCHQKGKNNQTECFNHVR-FLQRLNATHFYACGTHAFQPLC :.. :.. . . .: .:::. . :: : .. :. : : ..:::.::.:.: mKIAA1 TEVIPSKKLTWRSRQQDRENCAMKGKH-KDECHNFIKVFVPR-NDEMVFVCGTNAFNPMC 100 110 120 130 140 150 170 180 190 200 210 220 mKIAA1 AAIDAETFILPTSFEEGKEKCPYDPARGFTGLIIDGGLYTATRYEF-RSIPDIRRSRHPH .:. : .::.: . ..:. :: ::.:: .: : : :: mKIAA1 RYYRLRTLEYDGEEISGLARCPFDARQTNVALFADGKLYSATVADFLASDAVIYRSMGDG 160 170 180 190 200 210 230 240 mKIAA1 S-LRTEEAPMHWLNG : ::: . .:.. mKIAA1 SALRTIKYDSKWIKEPHFLHAIEYGNYVYFFFREIAVEHNNLGKAVYSRVARICKNDMGG 220 230 240 250 260 270 240 residues in 1 query sequences 1768777 residues in 2168 library sequences Scomplib [34t11] start: Mon Mar 27 10:49:40 2006 done: Mon Mar 27 10:49:41 2006 Scan time: 0.450 Display time: 0.040 Function used was FASTA [version 3.4t11 Apr 17, 2002]