# /usr/local/bin/fasta34_t -T 4 -b50 -d10 -E0.01 -H -O./tmp/mpg02927.fasta.nr -Q ../query/mKIAA1619.ptfa /cdna4/rodent/rouge_util/new.rouge/nfasta/nr 2 FASTA searches a protein or DNA sequence data bank version 34.26.5 April 26, 2007 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 mKIAA1619, 240 aa vs /cdna4/rodent/rouge_util/new.rouge/nfasta/nr library 2727779818 residues in 7921681 sequences statistics sampled from 60000 to 7920549 sequences Expectation_n fit: rho(ln(x))= 4.5383+/-0.000181; mu= 11.7118+/- 0.010 mean_var=58.3049+/-11.414, 0's: 36 Z-trim: 44 B-trim: 2232 in 1/65 Lambda= 0.167966 FASTA (3.5 Sept 2006) function [optimized, BL50 matrix (15:-5)] ktup: 2 join: 36, opt: 24, open/ext: -10/-2, width: 16 The best scores are: opt bits E(7921681) gi|148709996|gb|EDL41942.1| sema domain, immunoglo ( 776) 1474 365.4 1.5e-98 gi|8134702|sp|Q9WUH7.1|SEM4G_MOUSE RecName: Full=S ( 837) 1474 365.4 1.6e-98 gi|149040257|gb|EDL94295.1| sema domain, immunoglo ( 837) 1422 352.8 1e-94 gi|73998651|ref|XP_543973.2| PREDICTED: similar to ( 840) 1382 343.1 8.3e-92 gi|119570187|gb|EAW49802.1| sema domain, immunoglo ( 458) 1359 337.3 2.5e-90 gi|114632485|ref|XP_507985.2| PREDICTED: similar t ( 536) 1359 337.4 2.8e-90 gi|151554276|gb|AAI48104.1| SEMA4G protein [Bos ta ( 844) 1360 337.8 3.4e-90 gi|118763944|gb|AAI28580.1| SEMA4G protein [Homo s ( 702) 1359 337.5 3.4e-90 gi|13633937|sp|Q9NTN9.1|SEM4G_HUMAN RecName: Full= ( 838) 1359 337.5 3.9e-90 gi|56462541|emb|CAI10916.1| sema domain, immunoglo ( 843) 1359 337.5 4e-90 gi|194205755|ref|XP_001916730.1| PREDICTED: sema d ( 844) 1355 336.6 7.8e-90 gi|194386986|dbj|BAG59859.1| unnamed protein produ ( 552) 1353 335.9 7.9e-90 gi|109090287|ref|XP_001109068.1| PREDICTED: semaph ( 839) 1354 336.3 9.1e-90 gi|109090285|ref|XP_001109124.1| PREDICTED: sema d ( 844) 1354 336.3 9.2e-90 gi|126273501|ref|XP_001379491.1| PREDICTED: simila ( 840) 1181 294.4 3.8e-77 gi|224052725|ref|XP_002196424.1| PREDICTED: sema d ( 826) 965 242.0 2.1e-61 gi|47123219|gb|AAH70859.1| MGC84614 protein [Xenop ( 830) 813 205.2 2.6e-50 gi|157885978|emb|CAP09407.1| novel sema and immuno ( 838) 729 184.9 3.6e-44 gi|189526806|ref|XP_001921423.1| PREDICTED: simila (1806) 731 185.6 4.6e-44 gi|47223294|emb|CAF98678.1| unnamed protein produc ( 870) 715 181.5 3.9e-43 gi|47220634|emb|CAG06556.1| unnamed protein produc ( 836) 699 177.6 5.5e-42 gi|189526148|ref|XP_693092.3| PREDICTED: similar t ( 879) 634 161.9 3.2e-37 gi|109103896|ref|XP_001100467.1| PREDICTED: semaph ( 833) 547 140.8 6.7e-31 gi|73970098|ref|XP_538464.2| PREDICTED: similar to ( 849) 545 140.3 9.5e-31 gi|194220400|ref|XP_001916376.1| PREDICTED: sema d ( 647) 543 139.7 1.1e-30 gi|126303453|ref|XP_001379915.1| PREDICTED: simila ( 832) 544 140.0 1.1e-30 gi|194671303|ref|XP_604387.4| PREDICTED: similar t ( 833) 540 139.1 2.2e-30 gi|37182802|gb|AAQ89201.1| SEMA4C [Homo sapiens] ( 833) 537 138.3 3.6e-30 gi|47606208|sp|Q9C0C4.2|SEM4C_HUMAN RecName: Full= ( 833) 537 138.3 3.6e-30 gi|194224945|ref|XP_001493931.2| PREDICTED: simila ( 937) 535 137.9 5.5e-30 gi|149046375|gb|EDL99268.1| sema domain, immunoglo ( 834) 528 136.2 1.6e-29 gi|134054524|emb|CAM73256.1| unnamed protein produ ( 863) 528 136.2 1.7e-29 gi|119591731|gb|EAW71325.1| sema domain, immunoglo ( 886) 526 135.7 2.4e-29 gi|50415520|gb|AAH78116.1| Unknown (protein for MG ( 834) 525 135.4 2.7e-29 gi|8134699|sp|Q64151.1|SEM4C_MOUSE RecName: Full=S ( 834) 523 134.9 3.8e-29 gi|148682548|gb|EDL14495.1| mCG17761, isoform CRA_ ( 914) 523 135.0 4.1e-29 gi|149585882|ref|XP_001520007.1| PREDICTED: simila ( 465) 519 133.8 4.7e-29 gi|68533115|dbj|BAE06112.1| SEMA4D variant protein ( 870) 520 134.2 6.5e-29 gi|114625455|ref|XP_001141771.1| PREDICTED: semaph ( 928) 520 134.3 6.8e-29 gi|194041392|ref|XP_001928494.1| PREDICTED: simila ( 865) 518 133.7 9e-29 gi|119583172|gb|EAW62768.1| hCG1985052, isoform CR ( 534) 515 132.9 1e-28 gi|221045602|dbj|BAH14478.1| unnamed protein produ ( 548) 514 132.6 1.2e-28 gi|119583169|gb|EAW62765.1| hCG1985052, isoform CR ( 687) 515 132.9 1.3e-28 gi|119583170|gb|EAW62766.1| hCG1985052, isoform CR ( 738) 515 133.0 1.3e-28 gi|37927181|pdb|1OLZ|A Chain A, The Ligand-Binding ( 663) 514 132.7 1.4e-28 gi|119583171|gb|EAW62767.1| hCG1985052, isoform CR ( 853) 515 133.0 1.5e-28 gi|214010220|ref|NP_001135759.1| semaphorin 4D iso ( 738) 514 132.7 1.6e-28 gi|118104200|ref|XP_424426.2| PREDICTED: similar t ( 845) 514 132.8 1.7e-28 gi|168270916|dbj|BAG10251.1| semaphorin-4D precurs ( 862) 514 132.8 1.8e-28 gi|32493365|gb|AAH54500.1| Sema domain, immunoglob ( 862) 514 132.8 1.8e-28 >>gi|148709996|gb|EDL41942.1| sema domain, immunoglobuli (776 aa) initn: 1474 init1: 1474 opt: 1474 Z-score: 1925.5 bits: 365.4 E(): 1.5e-98 Smith-Waterman score: 1474; 100.000% identity (100.000% similar) in 214 aa overlap (26-239:1-214) 10 20 30 40 50 60 mKIAA1 LLFPSPPVTLLGCPRGLVGLNFRRKMWGRLWPLLFSFLTVTAVPGPSLRRPSRELDATPR ::::::::::::::::::::::::::::::::::: gi|148 MWGRLWPLLFSFLTVTAVPGPSLRRPSRELDATPR 10 20 30 70 80 90 100 110 120 mKIAA1 LTISYEELSQIRHFKGQTQNYSTLLLEEASERLLVGARGALFSLSARDIRDRTHKEIHWE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|148 LTISYEELSQIRHFKGQTQNYSTLLLEEASERLLVGARGALFSLSARDIRDRTHKEIHWE 40 50 60 70 80 90 130 140 150 160 170 180 mKIAA1 ASPEMQSKCHQKGKNNQTECFNHVRFLQRLNATHFYACGTHAFQPLCAAIDAETFILPTS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|148 ASPEMQSKCHQKGKNNQTECFNHVRFLQRLNATHFYACGTHAFQPLCAAIDAETFILPTS 100 110 120 130 140 150 190 200 210 220 230 240 mKIAA1 FEEGKEKCPYDPARGFTGLIIDGGLYTATRYEFRSIPDIRRSRHPHSLRTEEAPMHWLNG ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|148 FEEGKEKCPYDPARGFTGLIIDGGLYTATRYEFRSIPDIRRSRHPHSLRTEEAPMHWLND 160 170 180 190 200 210 gi|148 AEFVFSVLVRESKTSAVGDDDKIYFFFMEREEGSSSFTQSRSSHRVARVARVCKGDLGGK 220 230 240 250 260 270 >>gi|8134702|sp|Q9WUH7.1|SEM4G_MOUSE RecName: Full=Semap (837 aa) initn: 1474 init1: 1474 opt: 1474 Z-score: 1925.1 bits: 365.4 E(): 1.6e-98 Smith-Waterman score: 1474; 100.000% identity (100.000% similar) in 214 aa overlap (26-239:1-214) 10 20 30 40 50 60 mKIAA1 LLFPSPPVTLLGCPRGLVGLNFRRKMWGRLWPLLFSFLTVTAVPGPSLRRPSRELDATPR ::::::::::::::::::::::::::::::::::: gi|813 MWGRLWPLLFSFLTVTAVPGPSLRRPSRELDATPR 10 20 30 70 80 90 100 110 120 mKIAA1 LTISYEELSQIRHFKGQTQNYSTLLLEEASERLLVGARGALFSLSARDIRDRTHKEIHWE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|813 LTISYEELSQIRHFKGQTQNYSTLLLEEASERLLVGARGALFSLSARDIRDRTHKEIHWE 40 50 60 70 80 90 130 140 150 160 170 180 mKIAA1 ASPEMQSKCHQKGKNNQTECFNHVRFLQRLNATHFYACGTHAFQPLCAAIDAETFILPTS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|813 ASPEMQSKCHQKGKNNQTECFNHVRFLQRLNATHFYACGTHAFQPLCAAIDAETFILPTS 100 110 120 130 140 150 190 200 210 220 230 240 mKIAA1 FEEGKEKCPYDPARGFTGLIIDGGLYTATRYEFRSIPDIRRSRHPHSLRTEEAPMHWLNG ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|813 FEEGKEKCPYDPARGFTGLIIDGGLYTATRYEFRSIPDIRRSRHPHSLRTEEAPMHWLND 160 170 180 190 200 210 gi|813 AEFVFSVLVRESKTSAVGDDDKIYFFFMEREEGSSSFTQSRSSHRVARVARVCKGDLGGK 220 230 240 250 260 270 >>gi|149040257|gb|EDL94295.1| sema domain, immunoglobuli (837 aa) initn: 1422 init1: 1422 opt: 1422 Z-score: 1857.0 bits: 352.8 E(): 1e-94 Smith-Waterman score: 1422; 95.794% identity (98.598% similar) in 214 aa overlap (26-239:1-214) 10 20 30 40 50 60 mKIAA1 LLFPSPPVTLLGCPRGLVGLNFRRKMWGRLWPLLFSFLTVTAVPGPSLRRPSRELDATPR ::::::::::::::.:::::::::::::::::::: gi|149 MWGRLWPLLFSFLTATAVPGPSLRRPSRELDATPR 10 20 30 70 80 90 100 110 120 mKIAA1 LTISYEELSQIRHFKGQTQNYSTLLLEEASERLLVGARGALFSLSARDIRDRTHKEIHWE .:::::::: :::::::.::::::::::::.:::::::::::::::::: : :::::::: gi|149 MTISYEELSWIRHFKGQAQNYSTLLLEEASQRLLVGARGALFSLSARDIGDGTHKEIHWE 40 50 60 70 80 90 130 140 150 160 170 180 mKIAA1 ASPEMQSKCHQKGKNNQTECFNHVRFLQRLNATHFYACGTHAFQPLCAAIDAETFILPTS ::::::::::::::::::::::::::::::::.::::::::::::::::::::.:::::: gi|149 ASPEMQSKCHQKGKNNQTECFNHVRFLQRLNASHFYACGTHAFQPLCAAIDAEAFILPTS 100 110 120 130 140 150 190 200 210 220 230 240 mKIAA1 FEEGKEKCPYDPARGFTGLIIDGGLYTATRYEFRSIPDIRRSRHPHSLRTEEAPMHWLNG ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|149 FEEGKEKCPYDPARGFTGLIIDGGLYTATRYEFRSIPDIRRSRHPHSLRTEEAPMHWLND 160 170 180 190 200 210 gi|149 AEFVFSVLVRESKTSVVGDDDKIYYFFMEREEGSSSFTQSRSSHRVARVARVCKGDLGGK 220 230 240 250 260 270 >>gi|73998651|ref|XP_543973.2| PREDICTED: similar to sem (840 aa) initn: 1382 init1: 1382 opt: 1382 Z-score: 1804.5 bits: 343.1 E(): 8.3e-92 Smith-Waterman score: 1382; 92.523% identity (97.196% similar) in 214 aa overlap (26-239:1-214) 10 20 30 40 50 60 mKIAA1 LLFPSPPVTLLGCPRGLVGLNFRRKMWGRLWPLLFSFLTVTAVPGPSLRRPSRELDATPR ::::::::..::::.:::::::::::::::::::: gi|739 MWGRLWPLFLSFLTATAVPGPSLRRPSRELDATPR 10 20 30 70 80 90 100 110 120 mKIAA1 LTISYEELSQIRHFKGQTQNYSTLLLEEASERLLVGARGALFSLSARDIRDRTHKEIHWE .:: :::::. ::::::.::::::::::.: :::::::::::::.:::: : .::::::: gi|739 MTIPYEELSRTRHFKGQAQNYSTLLLEESSARLLVGARGALFSLNARDIGDGAHKEIHWE 40 50 60 70 80 90 130 140 150 160 170 180 mKIAA1 ASPEMQSKCHQKGKNNQTECFNHVRFLQRLNATHFYACGTHAFQPLCAAIDAETFILPTS :::::::::::::::::::::::::::::::::::::::::::::::::::::.: :::: gi|739 ASPEMQSKCHQKGKNNQTECFNHVRFLQRLNATHFYACGTHAFQPLCAAIDAEAFTLPTS 100 110 120 130 140 150 190 200 210 220 230 240 mKIAA1 FEEGKEKCPYDPARGFTGLIIDGGLYTATRYEFRSIPDIRRSRHPHSLRTEEAPMHWLNG ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|739 FEEGKEKCPYDPARGFTGLIIDGGLYTATRYEFRSIPDIRRSRHPHSLRTEEAPMHWLND 160 170 180 190 200 210 gi|739 AEFVFSVLVRESETSAVGDDDKVYYFFTERATDEGPNSFAQSRNSHRVARVARVCKGDLG 220 230 240 250 260 270 >>gi|119570187|gb|EAW49802.1| sema domain, immunoglobuli (458 aa) initn: 1359 init1: 1359 opt: 1359 Z-score: 1778.0 bits: 337.3 E(): 2.5e-90 Smith-Waterman score: 1359; 91.589% identity (96.262% similar) in 214 aa overlap (26-239:1-214) 10 20 30 40 50 60 mKIAA1 LLFPSPPVTLLGCPRGLVGLNFRRKMWGRLWPLLFSFLTVTAVPGPSLRRPSRELDATPR :::::::::.:.::.:::::::::::::::::::: gi|119 MWGRLWPLLLSILTATAVPGPSLRRPSRELDATPR 10 20 30 70 80 90 100 110 120 mKIAA1 LTISYEELSQIRHFKGQTQNYSTLLLEEASERLLVGARGALFSLSARDIRDRTHKEIHWE .:: ::::: ::::::.:::::::::::: ::::::::::::::: :: : .::::::: gi|119 MTIPYEELSGTRHFKGQAQNYSTLLLEEASARLLVGARGALFSLSANDIGDGAHKEIHWE 40 50 60 70 80 90 130 140 150 160 170 180 mKIAA1 ASPEMQSKCHQKGKNNQTECFNHVRFLQRLNATHFYACGTHAFQPLCAAIDAETFILPTS :::::::::::::::::::::::::::::::.::.::::::::::::::::::.: :::: gi|119 ASPEMQSKCHQKGKNNQTECFNHVRFLQRLNSTHLYACGTHAFQPLCAAIDAEAFTLPTS 100 110 120 130 140 150 190 200 210 220 230 240 mKIAA1 FEEGKEKCPYDPARGFTGLIIDGGLYTATRYEFRSIPDIRRSRHPHSLRTEEAPMHWLNG ::::::::::::::::::::::::::::::::::::::::::::::::::::.:::::: gi|119 FEEGKEKCPYDPARGFTGLIIDGGLYTATRYEFRSIPDIRRSRHPHSLRTEETPMHWLND 160 170 180 190 200 210 gi|119 AEFVFSVLVRESKASAVGDDDKVYYFFTERATEEGSGSFTQSRSSHRVARVARVCKGDLG 220 230 240 250 260 270 >>gi|114632485|ref|XP_507985.2| PREDICTED: similar to se (536 aa) initn: 1359 init1: 1359 opt: 1359 Z-score: 1777.1 bits: 337.4 E(): 2.8e-90 Smith-Waterman score: 1359; 91.589% identity (96.262% similar) in 214 aa overlap (26-239:1-214) 10 20 30 40 50 60 mKIAA1 LLFPSPPVTLLGCPRGLVGLNFRRKMWGRLWPLLFSFLTVTAVPGPSLRRPSRELDATPR :::::::::.:.::.:::::::::::::::::::: gi|114 MWGRLWPLLLSILTATAVPGPSLRRPSRELDATPR 10 20 30 70 80 90 100 110 120 mKIAA1 LTISYEELSQIRHFKGQTQNYSTLLLEEASERLLVGARGALFSLSARDIRDRTHKEIHWE .:: ::::: ::::::.:::::::::::: ::::::::::::::: :: : .::::::: gi|114 MTIPYEELSGTRHFKGQAQNYSTLLLEEASARLLVGARGALFSLSANDIGDGAHKEIHWE 40 50 60 70 80 90 130 140 150 160 170 180 mKIAA1 ASPEMQSKCHQKGKNNQTECFNHVRFLQRLNATHFYACGTHAFQPLCAAIDAETFILPTS :::::::::::::::::::::::::::::::.::.::::::::::::::::::.: :::: gi|114 ASPEMQSKCHQKGKNNQTECFNHVRFLQRLNSTHLYACGTHAFQPLCAAIDAEAFTLPTS 100 110 120 130 140 150 190 200 210 220 230 240 mKIAA1 FEEGKEKCPYDPARGFTGLIIDGGLYTATRYEFRSIPDIRRSRHPHSLRTEEAPMHWLNG ::::::::::::::::::::::::::::::::::::::::::::::::::::.:::::: gi|114 FEEGKEKCPYDPARGFTGLIIDGGLYTATRYEFRSIPDIRRSRHPHSLRTEETPMHWLND 160 170 180 190 200 210 gi|114 AEFVFSVLVRESKASAVGDDDKVYYFFTERATEEGSGSFTQSRSSHRVARVARVCKVDWA 220 230 240 250 260 270 >>gi|151554276|gb|AAI48104.1| SEMA4G protein [Bos taurus (844 aa) initn: 1360 init1: 1360 opt: 1360 Z-score: 1775.7 bits: 337.8 E(): 3.4e-90 Smith-Waterman score: 1360; 91.589% identity (96.729% similar) in 214 aa overlap (26-239:1-214) 10 20 30 40 50 60 mKIAA1 LLFPSPPVTLLGCPRGLVGLNFRRKMWGRLWPLLFSFLTVTAVPGPSLRRPSRELDATPR :::::::.:.::::.:::::::::::::::::::: gi|151 MWGRLWPFLLSFLTATAVPGPSLRRPSRELDATPR 10 20 30 70 80 90 100 110 120 mKIAA1 LTISYEELSQIRHFKGQTQNYSTLLLEEASERLLVGARGALFSLSARDIRDRTHKEIHWE .:: ::::: ::::::.:::::::::::: :::::::::::::.:.:: : :::::.:: gi|151 MTIPYEELSGTRHFKGQAQNYSTLLLEEASARLLVGARGALFSLNAQDIGDGTHKEIRWE 40 50 60 70 80 90 130 140 150 160 170 180 mKIAA1 ASPEMQSKCHQKGKNNQTECFNHVRFLQRLNATHFYACGTHAFQPLCAAIDAETFILPTS ::::::::::::::::::::::::::::::::::.:.::::::::::::::::.: :::: gi|151 ASPEMQSKCHQKGKNNQTECFNHVRFLQRLNATHLYTCGTHAFQPLCAAIDAEAFTLPTS 100 110 120 130 140 150 190 200 210 220 230 240 mKIAA1 FEEGKEKCPYDPARGFTGLIIDGGLYTATRYEFRSIPDIRRSRHPHSLRTEEAPMHWLNG ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|151 FEEGKEKCPYDPARGFTGLIIDGGLYTATRYEFRSIPDIRRSRHPHSLRTEEAPMHWLND 160 170 180 190 200 210 gi|151 AEFVFSVLVRESQASAVGDDDKVYYFFTERAAEEGAGSFAQSRSSHRVARVARVCKGDLG 220 230 240 250 260 270 >>gi|118763944|gb|AAI28580.1| SEMA4G protein [Homo sapie (702 aa) initn: 1359 init1: 1359 opt: 1359 Z-score: 1775.5 bits: 337.5 E(): 3.4e-90 Smith-Waterman score: 1359; 91.589% identity (96.262% similar) in 214 aa overlap (26-239:1-214) 10 20 30 40 50 60 mKIAA1 LLFPSPPVTLLGCPRGLVGLNFRRKMWGRLWPLLFSFLTVTAVPGPSLRRPSRELDATPR :::::::::.:.::.:::::::::::::::::::: gi|118 MWGRLWPLLLSILTATAVPGPSLRRPSRELDATPR 10 20 30 70 80 90 100 110 120 mKIAA1 LTISYEELSQIRHFKGQTQNYSTLLLEEASERLLVGARGALFSLSARDIRDRTHKEIHWE .:: ::::: ::::::.:::::::::::: ::::::::::::::: :: : .::::::: gi|118 MTIPYEELSGTRHFKGQAQNYSTLLLEEASARLLVGARGALFSLSANDIGDGAHKEIHWE 40 50 60 70 80 90 130 140 150 160 170 180 mKIAA1 ASPEMQSKCHQKGKNNQTECFNHVRFLQRLNATHFYACGTHAFQPLCAAIDAETFILPTS :::::::::::::::::::::::::::::::.::.::::::::::::::::::.: :::: gi|118 ASPEMQSKCHQKGKNNQTECFNHVRFLQRLNSTHLYACGTHAFQPLCAAIDAEAFTLPTS 100 110 120 130 140 150 190 200 210 220 230 240 mKIAA1 FEEGKEKCPYDPARGFTGLIIDGGLYTATRYEFRSIPDIRRSRHPHSLRTEEAPMHWLNG ::::::::::::::::::::::::::::::::::::::::::::::::::::.:::::: gi|118 FEEGKEKCPYDPARGFTGLIIDGGLYTATRYEFRSIPDIRRSRHPHSLRTEETPMHWLND 160 170 180 190 200 210 gi|118 AEFVFSVLVRESKASAVGDDDKVYYFFTERATEEGSGSFTQSRSSHRVARVARVCKGDLG 220 230 240 250 260 270 >>gi|13633937|sp|Q9NTN9.1|SEM4G_HUMAN RecName: Full=Sema (838 aa) initn: 1359 init1: 1359 opt: 1359 Z-score: 1774.4 bits: 337.5 E(): 3.9e-90 Smith-Waterman score: 1359; 91.589% identity (96.262% similar) in 214 aa overlap (26-239:1-214) 10 20 30 40 50 60 mKIAA1 LLFPSPPVTLLGCPRGLVGLNFRRKMWGRLWPLLFSFLTVTAVPGPSLRRPSRELDATPR :::::::::.:.::.:::::::::::::::::::: gi|136 MWGRLWPLLLSILTATAVPGPSLRRPSRELDATPR 10 20 30 70 80 90 100 110 120 mKIAA1 LTISYEELSQIRHFKGQTQNYSTLLLEEASERLLVGARGALFSLSARDIRDRTHKEIHWE .:: ::::: ::::::.:::::::::::: ::::::::::::::: :: : .::::::: gi|136 MTIPYEELSGTRHFKGQAQNYSTLLLEEASARLLVGARGALFSLSANDIGDGAHKEIHWE 40 50 60 70 80 90 130 140 150 160 170 180 mKIAA1 ASPEMQSKCHQKGKNNQTECFNHVRFLQRLNATHFYACGTHAFQPLCAAIDAETFILPTS :::::::::::::::::::::::::::::::.::.::::::::::::::::::.: :::: gi|136 ASPEMQSKCHQKGKNNQTECFNHVRFLQRLNSTHLYACGTHAFQPLCAAIDAEAFTLPTS 100 110 120 130 140 150 190 200 210 220 230 240 mKIAA1 FEEGKEKCPYDPARGFTGLIIDGGLYTATRYEFRSIPDIRRSRHPHSLRTEEAPMHWLNG ::::::::::::::::::::::::::::::::::::::::::::::::::::.:::::: gi|136 FEEGKEKCPYDPARGFTGLIIDGGLYTATRYEFRSIPDIRRSRHPHSLRTEETPMHWLND 160 170 180 190 200 210 gi|136 AEFVFSVLVRESKASAVGDDDKVYYFFTERATEEGSGSFTQSRSSHRVARVARVCKGDLG 220 230 240 250 260 270 >>gi|56462541|emb|CAI10916.1| sema domain, immunoglobuli (843 aa) initn: 1359 init1: 1359 opt: 1359 Z-score: 1774.4 bits: 337.5 E(): 4e-90 Smith-Waterman score: 1359; 91.589% identity (96.262% similar) in 214 aa overlap (26-239:1-214) 10 20 30 40 50 60 mKIAA1 LLFPSPPVTLLGCPRGLVGLNFRRKMWGRLWPLLFSFLTVTAVPGPSLRRPSRELDATPR :::::::::.:.::.:::::::::::::::::::: gi|564 MWGRLWPLLLSILTATAVPGPSLRRPSRELDATPR 10 20 30 70 80 90 100 110 120 mKIAA1 LTISYEELSQIRHFKGQTQNYSTLLLEEASERLLVGARGALFSLSARDIRDRTHKEIHWE .:: ::::: ::::::.:::::::::::: ::::::::::::::: :: : .::::::: gi|564 MTIPYEELSGTRHFKGQAQNYSTLLLEEASARLLVGARGALFSLSANDIGDGAHKEIHWE 40 50 60 70 80 90 130 140 150 160 170 180 mKIAA1 ASPEMQSKCHQKGKNNQTECFNHVRFLQRLNATHFYACGTHAFQPLCAAIDAETFILPTS :::::::::::::::::::::::::::::::.::.::::::::::::::::::.: :::: gi|564 ASPEMQSKCHQKGKNNQTECFNHVRFLQRLNSTHLYACGTHAFQPLCAAIDAEAFTLPTS 100 110 120 130 140 150 190 200 210 220 230 240 mKIAA1 FEEGKEKCPYDPARGFTGLIIDGGLYTATRYEFRSIPDIRRSRHPHSLRTEEAPMHWLNG ::::::::::::::::::::::::::::::::::::::::::::::::::::.:::::: gi|564 FEEGKEKCPYDPARGFTGLIIDGGLYTATRYEFRSIPDIRRSRHPHSLRTEETPMHWLND 160 170 180 190 200 210 gi|564 AEFVFSVLVRESKASAVGDDDKVYYFFTERATEEGSGSFTQSRSSHRVARVARVCKGDLG 220 230 240 250 260 270 240 residues in 1 query sequences 2727779818 residues in 7921681 library sequences Tcomplib [34.26] (2 proc) start: Sun Mar 15 04:13:48 2009 done: Sun Mar 15 04:18:52 2009 Total Scan time: 717.680 Total Display time: 0.060 Function used was FASTA [version 34.26.5 April 26, 2007]