FASTA searches a protein or DNA sequence data bank
 version 3.4t11 Apr 17, 2002
Please cite:
 W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

 ../query/mKIAA0004.ptfa, 368 aa
 vs ./tmplib.26680 library

1768649 residues in  2168 sequences
  Expectation_n fit: rho(ln(x))= 7.5168+/-0.00755; mu= 0.6258+/- 0.499
 mean_var=332.6899+/-80.170, 0's: 0 Z-trim: 5  B-trim: 0 in 0/36
 Lambda= 0.0703

FASTA (3.45 Mar 2002) function [optimized, BL50 matrix (15:-5)] ktup: 2
 join: 37, opt: 25, open/ext: -10/-2, width:  16
The best scores are:                                       opt bits E(2168)
mKIAA1398  ( 804 res)   mph00305                   ( 804)  373   52 1.8e-07


>>mKIAA1398  ( 804 res)   mph00305                        (804 aa)
 initn: 382 init1: 213 opt: 373  Z-score: 226.6  bits: 51.7 E(): 1.8e-07
Smith-Waterman score: 392;  29.268% identity (34.177% ungapped) in 369 aa overlap (15-349:314-663)

                               10        20        30        40    
mKIAA0                 NVHMIKIYLRLNRLRKACELLSLSFMFQLSVTSQVQELQNLLRG
                                     ... :: :     .. : :. .::..: .:
mKIAA1 RLEEVTRELCRAQTSHANLRADAEKAQEQQQRVAELHSKLQSSEVEVKSKCEELSSL-HG
           290       300       310       320       330       340   

           50        60        70        80        90       100    
mKIAA0 KEEQVNSMKAALEDRDRGLTGRGTCAQVCSTPQFEELESVLKEKDNEIKRIEVKLKDTES
       . ... . .. : .: :.. .      .  . : .....   : ...    ...::. ::
mKIAA1 QLKEARAENSQLTERIRSIEA------LLEAGQAQDIQASQAEANQQ----QTRLKELES
            350       360             370       380           390  

             110       120       130       140       150        160
mKIAA0 DVS---KMSELLKEVQEENKFLKCQLSHQKHQQASFPSQEELQTVISEKEKEITDLCN-E
       .::   : .  :::..:..:  . .: ..:. .:    .: :  .    :... .: . .
mKIAA1 QVSCLEKETSELKEAMEQQKGKNNDL-REKNWKA----MEALALAERACEEKLRSLTQAK
            400       410        420           430       440       

              170       180       190       200       210          
mKIAA0 LESLKRQHVEAIELESKDLLKRLFPTVSVPSNLNYSEWLRGFEKKAKACVA--GTSDAEA
        :: :. :.   : ..:. :  :.: .:. .. ::.:::. :..:..  .    ::   .
mKIAA1 EESEKQLHLA--EAQTKETLLALLPGLSISAHQNYAEWLQEFKEKGSELLKKPPTSLEPS
       450         460       470       480       490       500     

      220       230       240       250       260       270        
mKIAA0 VKVLEHRLKEASEMHTLLQLECEKYKSVLAETEGILQKLQRSVEQEESKWKIK---ADE-
       . ..  .:.:: : .. :: ::..:...::::::.:. ::.:::.::  :: :   :.: 
mKIAA1 MDIVL-KLREAEETQNSLQAECDQYRTILAETEGMLKDLQKSVEEEERVWKAKVGAAEEE
         510        520       530       540       550       560    

             280                        290           300       310
mKIAA0 ---SQRMIK-----------------QLRREREHLEMELEK----AEMERSTYVMEVREL
          :.  .:                 :.:..  ::: ::::    :  : ..:. ::  :
mKIAA1 LHKSRVTVKHLEDIVEKLKGELESSDQVREHTSHLEAELEKHMAEASAECQNYAKEVAGL
          570       580       590       600       610       620    

              320       330       340       350       360          
mKIAA0 KTQLNETHSKLQNEQTERKKVADDLHKAQQSLNSIHSKISLKAAGDTVVIENSDISPE  
       .  : :..:.:.. ..: .: .:.:  ..:.:....:..                     
mKIAA1 RQLLLESQSQLDEAKSEAQKQSDELALVRQQLSDMRSHVEDGDVAGSPAVPPAEQDPMKL
          630       640       650       660       670       680    

mKIAA1 KTQLERTEATLEDEQTRRQKLTAEFEEAQRTACRIQEELEELRAASPLGSSAKEEVTQLK
          690       700       710       720       730       740    




368 residues in 1 query   sequences
1768649 residues in 2168 library sequences
 Scomplib [34t11]
 start: Mon Mar 27 10:10:20 2006 done: Mon Mar 27 10:10:20 2006
 Scan time:  0.610 Display time:  0.020

Function used was FASTA [version 3.4t11 Apr 17, 2002]