FASTA searches a protein or DNA sequence data bank
version 3.4t11 Apr 17, 2002
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
../query/mKIAA0004.ptfa, 368 aa
vs ./tmplib.26680 library
1768649 residues in 2168 sequences
Expectation_n fit: rho(ln(x))= 7.5168+/-0.00755; mu= 0.6258+/- 0.499
mean_var=332.6899+/-80.170, 0's: 0 Z-trim: 5 B-trim: 0 in 0/36
Lambda= 0.0703
FASTA (3.45 Mar 2002) function [optimized, BL50 matrix (15:-5)] ktup: 2
join: 37, opt: 25, open/ext: -10/-2, width: 16
The best scores are: opt bits E(2168)
mKIAA1398 ( 804 res) mph00305 ( 804) 373 52 1.8e-07
>>mKIAA1398 ( 804 res) mph00305 (804 aa)
initn: 382 init1: 213 opt: 373 Z-score: 226.6 bits: 51.7 E(): 1.8e-07
Smith-Waterman score: 392; 29.268% identity (34.177% ungapped) in 369 aa overlap (15-349:314-663)
10 20 30 40
mKIAA0 NVHMIKIYLRLNRLRKACELLSLSFMFQLSVTSQVQELQNLLRG
... :: : .. : :. .::..: .:
mKIAA1 RLEEVTRELCRAQTSHANLRADAEKAQEQQQRVAELHSKLQSSEVEVKSKCEELSSL-HG
290 300 310 320 330 340
50 60 70 80 90 100
mKIAA0 KEEQVNSMKAALEDRDRGLTGRGTCAQVCSTPQFEELESVLKEKDNEIKRIEVKLKDTES
. ... . .. : .: :.. . . . : ..... : ... ...::. ::
mKIAA1 QLKEARAENSQLTERIRSIEA------LLEAGQAQDIQASQAEANQQ----QTRLKELES
350 360 370 380 390
110 120 130 140 150 160
mKIAA0 DVS---KMSELLKEVQEENKFLKCQLSHQKHQQASFPSQEELQTVISEKEKEITDLCN-E
.:: : . :::..:..: . .: ..:. .: .: : . :... .: . .
mKIAA1 QVSCLEKETSELKEAMEQQKGKNNDL-REKNWKA----MEALALAERACEEKLRSLTQAK
400 410 420 430 440
170 180 190 200 210
mKIAA0 LESLKRQHVEAIELESKDLLKRLFPTVSVPSNLNYSEWLRGFEKKAKACVA--GTSDAEA
:: :. :. : ..:. : :.: .:. .. ::.:::. :..:.. . :: .
mKIAA1 EESEKQLHLA--EAQTKETLLALLPGLSISAHQNYAEWLQEFKEKGSELLKKPPTSLEPS
450 460 470 480 490 500
220 230 240 250 260 270
mKIAA0 VKVLEHRLKEASEMHTLLQLECEKYKSVLAETEGILQKLQRSVEQEESKWKIK---ADE-
. .. .:.:: : .. :: ::..:...::::::.:. ::.:::.:: :: : :.:
mKIAA1 MDIVL-KLREAEETQNSLQAECDQYRTILAETEGMLKDLQKSVEEEERVWKAKVGAAEEE
510 520 530 540 550 560
280 290 300 310
mKIAA0 ---SQRMIK-----------------QLRREREHLEMELEK----AEMERSTYVMEVREL
:. .: :.:.. ::: :::: : : ..:. :: :
mKIAA1 LHKSRVTVKHLEDIVEKLKGELESSDQVREHTSHLEAELEKHMAEASAECQNYAKEVAGL
570 580 590 600 610 620
320 330 340 350 360
mKIAA0 KTQLNETHSKLQNEQTERKKVADDLHKAQQSLNSIHSKISLKAAGDTVVIENSDISPE
. : :..:.:.. ..: .: .:.: ..:.:....:..
mKIAA1 RQLLLESQSQLDEAKSEAQKQSDELALVRQQLSDMRSHVEDGDVAGSPAVPPAEQDPMKL
630 640 650 660 670 680
mKIAA1 KTQLERTEATLEDEQTRRQKLTAEFEEAQRTACRIQEELEELRAASPLGSSAKEEVTQLK
690 700 710 720 730 740
368 residues in 1 query sequences
1768649 residues in 2168 library sequences
Scomplib [34t11]
start: Mon Mar 27 10:10:20 2006 done: Mon Mar 27 10:10:20 2006
Scan time: 0.610 Display time: 0.020
Function used was FASTA [version 3.4t11 Apr 17, 2002]