FASTA searches a protein or DNA sequence data bank version 3.4t11 Apr 17, 2002 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 ../query/mKIAA4025.ptfa, 930 aa vs ./tmplib.26680 library 1768087 residues in 2168 sequences Expectation_n fit: rho(ln(x))= 8.9954+/-0.00764; mu= -0.8536+/- 0.510 mean_var=275.7579+/-66.227, 0's: 0 Z-trim: 1 B-trim: 143 in 1/35 Lambda= 0.0772 FASTA (3.45 Mar 2002) function [optimized, BL50 matrix (15:-5)] ktup: 2 join: 39, opt: 27, open/ext: -10/-2, width: 16 The best scores are: opt bits E(2168) mKIAA0201 ( 570 res) mib20025 ( 570) 1117 138 3.2e-33 >>mKIAA0201 ( 570 res) mib20025 (570 aa) initn: 2039 init1: 1059 opt: 1117 Z-score: 688.8 bits: 138.0 E(): 3.2e-33 Smith-Waterman score: 2082; 55.420% identity (57.428% ungapped) in 572 aa overlap (377-930:1-570) 350 360 370 380 390 400 mKIAA4 KIRALLRLSQECEKLKKLMSANASDLPLSIECFMNDIDVSGTMNRGKFLEMCDDLLARVE :::::: :::: :::..: :.: .:: ..: mKIAA0 ECFMNDKDVSGKMNRSQFEELCAELLQKIE 10 20 30 410 420 430 440 450 460 mKIAA4 PPLRSVLEQSKLKKEDIYAVEIVGGATRIPAVKEKISKFFGKELSTTLNADEAVTRGCAL ::.:.. :..:: ::. :.::::::::::::::.:.:::::..::::::::::.::::: mKIAA0 VPLHSLMAQTQLKAEDVSAIEIVGGATRIPAVKERIAKFFGKDVSTTLNADEAVARGCAL 40 50 60 70 80 90 470 480 490 500 510 520 mKIAA4 QCAILSPAFKVREFSITDVVPYPISLRWNSPAEEGLSDCEVFPKNHAAPFSKVLTFYRKE :::::::::::::::.::.::.:::: :: .:: . ::: .:::::::::::: :. mKIAA0 QCAILSPAFKVREFSVTDAVPFPISLVWNHDSEETEGVHEVFSRNHAAPFSKVLTFLRRG 100 110 120 130 140 150 530 540 550 560 570 580 mKIAA4 PFTLEAYYSSPQDLPYPDPAIAQFSVQKVTPQSDGSSSKVKVKVRVNVHGIFSVSSAALV :: :::.::.:: .:::. :..: ::.:. :.:: .:.::::::::.::::..:.:..: mKIAA0 PFELEAFYSDPQGVPYPEAKIGRFVVQNVSAQKDGEKSRVKVKVRVNTHGIFTISTASMV 160 170 180 190 200 210 590 600 610 620 630 mKIAA4 E-VHKSEESEEPMETD-----QNAKE----EEKMQVDQEEPHTEEQ-----QQQPQTPAE : : ::. .:.: : : ....: :. : :. : :: :.: mKIAA0 EKVPTEEEDGSSLEADMECPNQRPTESSDVDKNIQQDNSEAGTQPQVQTDGQQTSQSPPS 220 230 240 250 260 270 640 650 660 670 680 690 mKIAA4 NKAESEEMETSQAG-SKDKKTDQPPQAKKAKVKTSTVDLPIESQLLWQLDREMLGLYTEN . ::: .: .: ...::.::::.::: :.:. .:.::.:..:.::: :..:..: :. mKIAA0 PELTSEESKTPDADKANEKKVDQPPEAKKPKIKVVNVELPVEANLVWQLGRDLLNMYIET 280 290 300 310 320 330 700 710 720 730 740 750 mKIAA4 EGKMIMQDKLEKERNDAKNAVEEYVYEMRDKLSGEYEKFVSEDDRNTFTLKLEDTENWLY ::::::::::::::::::::::: :::.:::: : ::::. :.... : : .::.::: mKIAA0 EGKMIMQDKLEKERNDAKNAVEECVYEFRDKLCGPYEKFICEQEHEKFLRLLTETEDWLY 340 350 360 370 380 390 760 770 780 790 800 810 mKIAA4 EDGEDQPKQVYVDKLAELKSLGQPIKTRFQESEERPKLFEELGKQIQQYMKVISSFKNKE :.:::: ::.:.::: :: ..: :.:.::::.:::::..::::...:.: :. ..:..:. mKIAA0 EEGEDQAKQAYIDKLEELMKMGTPVKVRFQEAEERPKVLEELGQRLQHYAKIAADFRGKD 400 410 420 430 440 450 820 830 840 850 860 870 mKIAA4 DQYEHLDAADVTKVEKSTNEAMEWMNSKLNLQNKQSLTVDPVVKTKEIEAKIKELTSICS ..:.:.: ... :::::.::.:::::. .: : :.:: ::::.:.::.::.:::...: mKIAA0 EKYNHIDESEMKKVEKSVNEVMEWMNNVMNAQAKRSLDQDPVVRTHEIRAKVKELNNVCE 460 470 480 490 500 510 880 890 900 910 920 mKIAA4 PIISKPKPKVEPPKEE--PKHAEQNGPVDGQGDNPGSQAAEHGADTAVPSDGDKKLPEMD :....::::.: :: : :. . . : .: : . : : :.. : .:: mKIAA0 PVVTQPKPKIESPKLERTPNGPNIDKKEDLEGKNNLGAEAPHQNGECHPNE--KGSVNMD 520 530 540 550 560 930 mKIAA4 ID .: mKIAA0 LD 570 930 residues in 1 query sequences 1768087 residues in 2168 library sequences Scomplib [34t11] start: Mon Mar 27 10:59:32 2006 done: Mon Mar 27 10:59:34 2006 Scan time: 0.930 Display time: 0.040 Function used was FASTA [version 3.4t11 Apr 17, 2002]