FASTA searches a protein or DNA sequence data bank
 version 3.4t11 Apr 17, 2002
Please cite:
 W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

 ../query/mKIAA1741.ptfa, 1324 aa
 vs ./tmplib.26680 library

1767693 residues in  2168 sequences
  Expectation_n fit: rho(ln(x))= 10.8471+/-0.00755; mu= -10.7931+/- 0.500
 mean_var=304.9101+/-72.483, 0's: 0 Z-trim: 1  B-trim: 0 in 0/36
 Lambda= 0.0734

FASTA (3.45 Mar 2002) function [optimized, BL50 matrix (15:-5)] ktup: 2
 join: 40, opt: 28, open/ext: -10/-2, width:  16
The best scores are:                                       opt bits E(2168)
mKIAA1671  ( 191 res)   mfj25262                   ( 191)  308   47 5.4e-06


>>mKIAA1671  ( 191 res)   mfj25262                        (191 aa)
 initn: 313 init1: 108 opt: 308  Z-score: 199.9  bits: 46.5 E(): 5.4e-06
Smith-Waterman score: 308;  34.184% identity (39.412% ungapped) in 196 aa overlap (1139-1323:4-184)

     1110      1120      1130      1140      1150      1160        
mKIAA1 ASQVEEVDGTWSLTGAARQNEQASAPPPRRPPRGLLPSCPSEDFSFIEDTEILDSAMYRS
                                     ::  . :.   .:::::..: .:::.  ..
mKIAA1                            EGPPPSDVCPA-QEDDFSFIHQTSVLDSSALKT
                                          10         20        30  

     1170      1180      1190      1200                 1210       
mKIAA1 RANLGRKRGHRAPAIRPGGTLGLSETADSDTR-----------LFQDSTEPRASRVPSSD
       :..:...  .:::    . .:  :. ..:..:           .:.:::: .. :   ::
mKIAA1 RVQLSKRSRRRAPI---SHSLRRSQFSESESRSPLEEESHSTWMFKDSTEEKSPRRDESD
             40           50        60        70        80         

      1220      1230      1240      1250      1260      1270       
mKIAA1 EEVVEEPQSRRTRMSLGTKGLKVNLFPGLSPSALKAKLRSRNRSAEEGEVTESKSSQKES
       ::    :. .:: .:   .  .. .:::..:..:::.: .:..    :. . : . : .:
mKIAA1 EE---PPRVERTPVS---HPQRMPVFPGMDPAVLKAQLPKRSEVDSPGD-SLSWTPQPKS
      90          100          110       120       130        140  

      1280      1290      1300      1310      1320          
mKIAA1 SVQRSKSCKVPGLGKPLTLPPKPEKSSGSEGSSPNWLQALKLKKKKI      
            ::   ::.    .:::. ::   ::  ::.::. :: ::..       
mKIAA1 P----KSPFHPGVLGSRVLPPSTEKEERSEECSPQWLKELKSKKRQSLYENQA
                150       160       170       180       190 




1324 residues in 1 query   sequences
1767693 residues in 2168 library sequences
 Scomplib [34t11]
 start: Mon Mar 27 10:52:08 2006 done: Mon Mar 27 10:52:09 2006
 Scan time:  1.290 Display time:  0.020

Function used was FASTA [version 3.4t11 Apr 17, 2002]