FASTA searches a protein or DNA sequence data bank
 version 3.4t11 Apr 17, 2002
Please cite:
 W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

 ../query/mKIAA0052.ptfa, 744 aa
 vs ./tmplib.26680 library

1768273 residues in  2168 sequences
  Expectation_n fit: rho(ln(x))= 5.0595+/-0.00394; mu= 13.7296+/- 0.262
 mean_var=86.4441+/-19.716, 0's: 0 Z-trim: 2  B-trim: 0 in 0/36
 Lambda= 0.1379

FASTA (3.45 Mar 2002) function [optimized, BL50 matrix (15:-5)] ktup: 2
 join: 38, opt: 26, open/ext: -10/-2, width:  16
The best scores are:                                       opt bits E(2168)
mKIAA0788  ( 1909 res)   mpf00420                  (1909)  236   58 1.1e-08


>>mKIAA0788  ( 1909 res)   mpf00420                       (1909 aa)
 initn: 260 init1: 165 opt: 236  Z-score: 248.0  bits: 57.9 E(): 1.1e-08
Smith-Waterman score: 236;  29.697% identity (30.625% ungapped) in 165 aa overlap (101-262:481-643)

               80        90       100       110        120         
mKIAA0 MQVLRDAGDLAKGDQKGRKGGTKGPSNVFKIVKMIMERNFQ-PVIIFSFSKKDCEAYALQ
                                     . . :::.  .  :..:  :.:.    :  
mKIAA0 NSFRPVPLEQTYVGITEKKAIKRFQIMNEIVYEKIMEHAGKNQVLVFVHSRKETGKTARA
              460       470       480       490       500       510

     130       140       150       160       170       180         
mKIAA0 MTKLDFNTDEEKKMVEEVFNNAIDCLSDEDKKLPQVEHVLPLLKRGIGIHHGGLLPILKE
       .  . .. :    ...:  . . . :  : ..  ..: .  ::  :..:::.:.  . . 
mKIAA0 IRDMCLEKDTLGLFLREG-SASTEVLRTEAEQCKNLE-LKDLLPYGFAIHHAGMTRVDRT
              520        530       540        550       560        

     190       200       210       220       230         240       
mKIAA0 TIEILFSEGLIKALFATETFAMGINMPARTVLFTNARKYDGKDFRWISSG--EYIQMSGR
        .: ::..  :..: .: :.: :.:.::.::.. ... :. .  ::   :  . .:: ::
mKIAA0 LVEDLFADKHIQVLVSTATLAWGVNLPAHTVIIKGTQVYSPEKGRWTELGALDILQMLGR
      570       580       590       600       610       620        

       250       260       270       280       290       300       
mKIAA0 AGRRGMDDRGIVILMVDEKMSPTIGKQLLKGSADPLNSAFHLTYNMVLNLLRVEEINPEY
       :::  .: .:  ::..                                            
mKIAA0 AGRPQYDTKGEGILITSHGELQYYLSLLNQQLPIESQMVSKLPDMLNAEIVLGNVQNAKD
      630       640       650       660       670       680        




744 residues in 1 query   sequences
1768273 residues in 2168 library sequences
 Scomplib [34t11]
 start: Mon Mar 27 10:11:16 2006 done: Mon Mar 27 10:11:16 2006
 Scan time:  0.850 Display time:  0.040

Function used was FASTA [version 3.4t11 Apr 17, 2002]