FASTA searches a protein or DNA sequence data bank version 3.4t11 Apr 17, 2002 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 ../query/mKIAA1994.ptfa, 1058 aa vs ./tmplib.26680 library 1767959 residues in 2168 sequences Expectation_n fit: rho(ln(x))= 12.6266+/-0.00967; mu= -16.5980+/- 0.638 mean_var=559.3517+/-140.618, 0's: 0 Z-trim: 6 B-trim: 136 in 1/35 Lambda= 0.0542 FASTA (3.45 Mar 2002) function [optimized, BL50 matrix (15:-5)] ktup: 2 join: 39, opt: 27, open/ext: -10/-2, width: 16 The best scores are: opt bits E(2168) mKIAA0181 ( 1169 res) mpm10369 (1169) 306 39 0.0039 mKIAA0827 ( 1033 res) mbg05617 (1033) 298 39 0.0055 >>mKIAA0181 ( 1169 res) mpm10369 (1169 aa) initn: 214 init1: 115 opt: 306 Z-score: 148.7 bits: 39.3 E(): 0.0039 Smith-Waterman score: 350; 21.537% identity (24.733% ungapped) in 859 aa overlap (117-908:107-921) 90 100 110 120 130 140 mKIAA1 AHPAMFPRRGSGGGSASALNAAGTGVSGAAPSSEDFPP-PSLLQPPPPAASSTQGPQPPP :... : :. :::::. ..: : mKIAA0 PGYPTQPVEQRPLPQMPPQLMQHVAPPPQPPQQQPQPQLPQQQQPPPPSQPQSQQQQQQQ 80 90 100 110 120 130 150 160 170 180 190 mKIAA1 -----------PQSLNL-LSQ-AQLQGQPLAPGGTQMKKKSGFQITSVTPAQISASISSN :.:. : .:: .. :: : . .: ... .. .. : ::. . mKIAA0 QMMMMLMMQQDPKSIRLPVSQNVHPPRGPLNPDSQRMPVQQSGNVPVMVGLQGPASVPPS 140 150 160 170 180 190 200 210 220 230 240 mKIAA1 NSIAEDTESYDDLDESHTEDLSSSEILDVSLSRATDLGE----PERSSSEETLNNFQEAE . . : . :... . .: . . : .. ::: :: :.:: . mKIAA0 PDKQRMPMSVNTPMGSNSRKMVYQE--NPQNSSSSPLGEMSSLPEASGSEVPSVAGGPNN 200 210 220 230 240 250 250 260 270 280 290 mKIAA1 TPG--AVSPNQPHL--PQPHLPHL-------PQQNVVINGNAHPHHLHHHHHPHHGHHLH :. .:: :: . :.: : ::: : :. : : :: :. . . mKIAA0 MPSHLVVSQNQLMMTGPKPGPSPLSATQGATPQQPPV---NSLPSS-HGHHFPNVAAPTQ 260 270 280 290 300 310 300 310 320 330 340 mKIAA1 HGHHHSSHAAVAGPSIPGGPPSSPVSRKLSTTGSSDG--GVPVA---PP----PAVPSSG .. .. . : : : : . : : . : . : .. .: :: : : . mKIAA0 TSRPKTPNRASPRPYYPQTPNNRPPSTEPSEISLSPERLNASIAGLFPPQINIPLPPRPN 320 330 340 350 360 370 350 360 370 380 390 400 mKIAA1 LPASVMTNIRTPSTTGSLAAGITVGVVSSQQQQQQPTVNTSRFRVVKLDSTSEPFKKGRW : . . .:.: ... . . .... . : .. ::. . :.: : mKIAA0 LNRGFDQQGLNPTTLKAIGQAPSNLTITNPPNFAAPQAHKLDSVVVNSGKQSNPGTTKRA 380 390 400 410 420 430 410 420 430 440 450 460 mKIAA1 TCTEFYEKENAVPATEGVAINKVVETVKQTPTEASSSERESTSGSSVSSSVSTLSHYTES . . :. .. : . : ::. . .. . ...:..:: . mKIAA0 SPS------NSRRSSPG-------SSRKTTPSPGRQNSKAPKL--TLASQTSTTMLQNME 440 450 460 470 470 480 490 500 510 520 mKIAA1 VGSGEMMGAPAVVAPQQPPLPPAPPGLQGVALQQLEFSSPAPQSI-----AAVSMPQSI- . . ..: :. .: .:::: . :. :. :. :: .. .:..::. mKIAA0 LPRNVLVG-PTPLA--NPPLPGSFPNNTGLNPQNPTVPVPAMGTVLEDNKESVNIPQDSD 480 490 500 510 520 530 530 540 550 560 570 mKIAA1 ---SQSQMSQVQLQPQELSFQQKQTLQPVPLQATMSAATGIQPSPVSVVG-----VTAAV .:.. ::. . . . :. . . :: . . . . ..:. . : .. :. mKIAA0 CQNAQGRKEQVNTELKVVPTQEAK--MAVPEDQSKKDGQPLDPNKLPSVEENKNLMSPAM 540 550 560 570 580 590 580 590 600 610 620 630 mKIAA1 GQQPSVSS--LAQPQLPYSQTAPPVQTPLPGAPPQQLQYGQQQPMVPAQIAPGHGQPVTQ . :. : : . : :: : : .:: . :.. . :.. : .: .. mKIAA0 REAPTSLSQLLDNSGAPNVTIKPPGLTDLEVTPP--VVSGED--LRKASVIPTLQDPPSK 600 610 620 630 640 640 650 660 670 680 mKIAA1 NPTSEYVQQQQQQQPIFQAALSSGQSSSTGTGAGISVIPV----AQAQGIQLPGQPTAVQ .:.. ... ....: ..:. .. : ....:. :. :: .....:. : :. . mKIAA0 EPSTS-LSSPHSSEPC--STLARSELSEVSSNAAPSIPPVMSRPVSSSSISTPLPPNQIT 650 660 670 680 690 700 690 700 710 720 730 740 mKIAA1 TQPAGAPGQPIGQAQTAVSTVPTGGQIASIGQQANIPTAVQQPSTQVTPSVIQQGAPPSS . . ..:: .... ...:: : : .. ...:.. .. .. :. :..: : mKIAA0 VF---VTSNPITTSSNTSAALPTHLQSALMSTVVTMPNVGNKVMVSEGQSAAQSNARP-- 710 720 730 740 750 750 760 770 780 790 mKIAA1 QVVLPA---PTGIIH--QGVQTR---ASSLPQQLVIAPQSTLVTVPPQ-PQGVETVAQGV : . :. ..::. .: : :. : . . : :. :. : . ::... ... mKIAA0 QFITPVFINSSSIIQVMKGSQPSTIPATPLTTNSGLMPPSVAVVGPLHIPQNIK-FSSAP 760 770 780 790 800 810 800 810 820 830 840 850 mKIAA1 VSQQLPTGSPLPSASTISVTNQVSSAAPSGMPSVPTNLVPPQNIAQPPATQNGSLVQSVS :. ..:..:: :. .: : :.: .:: : . : .: :..:. . .. mKIAA0 VTPNVPSSSPAPNIQTGRPLVLSSRATPVQLPSPPCTSSPV--VAPNPSVQQVKELNPDE 820 830 840 850 860 870 860 870 880 890 900 910 mKIAA1 QSPLIATNINLPLAQQIPLSSTQFSTQSLAQAIGSQMEDARRPAEPSLGGLPQTMSGDSG :: :: . . : . : . :... ::. . : :. : : mKIAA0 ASP--QTNTSADQSTLPPSQPTTVVSPLLTNSPGSSA-NRRSPVSSSKGKGKVDKIGQIL 880 890 900 910 920 930 920 930 940 950 960 970 mKIAA1 GMSAVSDGSSSSLAAPASLFPLKVLPLTTPLVDGEDESSGASVVAIDNKIEQAMDLVKSH mKIAA0 LTKACKKVTGSLEKGEEQYGADGETEGPGLEITTPGLMGTEQCSTELDSKTPTPSAPTLL 940 950 960 970 980 990 >>mKIAA0827 ( 1033 res) mbg05617 (1033 aa) initn: 165 init1: 89 opt: 298 Z-score: 146.0 bits: 38.6 E(): 0.0055 Smith-Waterman score: 333; 20.368% identity (22.705% ungapped) in 923 aa overlap (14-869:114-1008) 10 20 30 40 mKIAA1 AGSGVGQRSPRRHEQPAPSAEEEEEEGSRRAELQVLF-VSPAS .. .: . . :: . :... .. .. mKIAA0 TILPNALITPLISSSMIKTEDVTPMEVTSEKRSSPIFQTTKSIGSTQQTLETISNIAGGA 90 100 110 120 130 140 50 60 70 80 90 mKIAA1 PYKDYGAEGNCTCLLRPPVPSTMHQPPESTAAAAAAADISARKMAHPAMFPRRGSGG--- :... .. .. : : . .. :.. . .. :... ...:. :: .... mKIAA0 PFSSPSSSSH----LTPESENQQQLQPKAYNPETLTT-IQTQDISQPGTFPAVSAASQLP 150 160 170 180 190 100 110 120 130 140 150 mKIAA1 GSASALNAAGTGVSGAAPSSEDFPPPSLLQPPPPAASSTQGPQPPPPQSLNLLSQAQLQG .: . :. : . : : . . .... . .: : .: :. .: .: . mKIAA0 SSDALLQQATQFQTREAQSRDTIQSDTVVNLSQLTEASQQQQSPLQEQAQTLQQQIPSNI 200 210 220 230 240 250 160 170 180 190 200 mKIAA1 QPLAPGGTQMKKK-SGFQITSVTPAQI---SASISSNNSIAEDTE-------SYDDLDES : . .:... . .: : : . :.:.. ... : . : : .:. mKIAA0 FPSPSSVSQLQSTIQQLQAGSFTGSAAGGRSGSVDLVQQVLEAQQQLSSVLFSTPDGNEN 260 270 280 290 300 310 210 220 230 240 250 260 mKIAA1 HTEDLSSSEILDVSLSRATDLGEPERSSSEETLNNFQEAETPG-AVSPNQPH---LPQPH :.:.. .:..:: . . .. ::.: .... . :: : : .: : . . mKIAA0 VQEQLNA-DIFQVSQIQNS-VSPGMFSSAESAVHTRPDNLLPGRADSVHQQTENTLSNQQ 320 330 340 350 360 370 270 280 290 300 310 320 mKIAA1 LPHLPQQNVVINGNAHPHHLHHHHHPHHGHHLHHGHHHSSHAAVAGPSIPGGPPSSPVSR . ::.:. .. : .... . . ... : :: :. :. .: . :. mKIAA0 QQQQQQQQVMESSAAMVMEMQQSIC-QAAAQIQSELFPS--AASASGSLQQSPVYQQPSH 380 390 400 410 420 430 330 340 350 360 370 380 mKIAA1 KLSTTGSS-DGGVPV---APPPAVPSSGLPASVMTNIRTPSTTGSLAAGITVGVVSSQQQ .:. .. : . . :::. .. ... .. ::..: . . : .. : mKIAA0 MMSALPTNEDMQMQCELFSSPPAASGNETSTTTTPQVATPGSTMFQTPSSGDGEETGAQA 440 450 460 470 480 490 390 400 410 420 430 mKIAA1 QQQPTVNTSRFR-VVKLDSTSEPFKKGRWTCTEFYEKENAVPATEGVAINKVVETVKQTP .: ...: :. .:... ... . .... . . . .... . .. ... : mKIAA0 KQ---IQNSVFQTMVQMQRSGDSQPQ-----VNLFSSTKNIMSVQNNGTQQQGNSLFQQG 500 510 520 530 540 440 450 460 470 480 490 mKIAA1 TEASSSERESTSGSSVSSSVSTLSHYTESVGSGEMMGAPAVVAPQQPPLPPAPPGLQGVA .: : . . .: : : . : : . ..... .. . . . : : . . .. mKIAA0 SEMMSLQSGNFLQQS-SHSQAQLFHPQNPIADAQNLSQETQGSIFHSPNPIVHSQTSTAS 550 560 570 580 590 600 500 510 520 530 540 550 mKIAA1 LQQLEFSSPAPQSIAAVSMPQSISQSQMS-QVQLQPQELSFQQKQTLQPVPLQATMSAAT .::. : :. :: . .:. :.:.: .. :. . .. : .:. . ..: . mKIAA0 SEQLQPSMFHSQNTIAVLQGSSVPQDQQSPNIFLSQSSINNLQTNTVAQEEQISFFAAQN 610 620 630 640 650 660 560 570 580 590 600 610 mKIAA1 GIQP-SPVSVVGVTAAVGQQPSVSSLAQPQLPYSQTAPPVQ------TPLPGAPPQQLQY .:.: . .: . :: ::: .: . : : :. : : . : . ::. . mKIAA0 SISPLQSTSNTEQQAAFQQQPPISHIQTPILSQEQAQPSQQGLFQPQVALGSLPPNPMPQ 670 680 690 700 710 720 620 630 640 650 660 mKIAA1 GQQQPMVPAQIAPGHGQPVTQNPTSEYVQQQQQQQPIFQAALSSGQS---SSTGTGAGIS .:: :. .: : :. ...:..: ::::::: : .. :: :. .. : .. mKIAA0 NQQGPIFQTQ-RPIVGMQ-SNSPSQEQQQQQQQQQQQQQQQQQQQQSILFSNQNAMATMA 730 740 750 760 770 780 670 680 690 700 710 720 mKIAA1 VIPVAQAQGIQLPGQ-PTAVQTQPAGAPGQPIGQAQTAVSTVPTGGQIASIGQQANI--- . . :.: : : : : .: : . :. .. . : .. .: .. mKIAA0 SQKQPPPNMMFSPNQNPMASQEQQ----NQSIFHQQSNMAPMNQEQQPMQFQNQPTVSSL 790 800 810 820 830 730 740 750 760 770 mKIAA1 ----PTAVQQPSTQV---TPSV-IQQGAPPS--SQVVL---PAPTGIIHQGVQTRASSLP :: ..:.:.. .:.. . ::.: : .::.: :: . .. ... .. mKIAA0 QNPGPTQSESPQTSLFHSSPQIQLVQGSPSSQDQQVTLFLSPASMSALQTSINQ--PDMQ 840 850 860 870 880 890 780 790 800 810 820 mKIAA1 QQLVIAPQSTL-----VTVPPQPQGV--ETVAQGVVSQ-QLPTGSPLPSAST--ISVTNQ :. . .::... : ::::.. .... :...: : :: ... ... :. mKIAA0 QSPLYSPQNNIPGIQGSTSSPQPQATLFHNTTGGTINQIQNSPGSSQQTSGMFLFGIQNN 900 910 920 930 940 950 830 840 850 860 870 mKIAA1 VSSAAPSGMPSVPTNLVPPQNIAQPPATQNGSLVQSVSQ-----SPLIATNINLPLAQQI :. :: ..: .:. .. .:: ..:.. .:: ::: :...: mKIAA0 CSQLLTSGPATLPDQLMAINQQGQPQNEGQSSVTTLLSQQMPETSPL-ASSVNSSQNMEK 960 970 980 990 1000 1010 880 890 900 910 920 930 mKIAA1 PLSSTQFSTQSLAQAIGSQMEDARRPAEPSLGGLPQTMSGDSGGMSAVSDGSSSSLAAPA mKIAA0 IDLLVSLQSQGNNLTGSF 1020 1030 1058 residues in 1 query sequences 1767959 residues in 2168 library sequences Scomplib [34t11] start: Mon Mar 27 10:57:15 2006 done: Mon Mar 27 10:57:16 2006 Scan time: 1.080 Display time: 0.170 Function used was FASTA [version 3.4t11 Apr 17, 2002]