FASTA searches a protein or DNA sequence data bank version 3.4t11 Apr 17, 2002 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 ../query/mKIAA1717.ptfa, 384 aa vs ./tmplib.26680 library 1768633 residues in 2168 sequences Expectation_n fit: rho(ln(x))= 4.4769+/-0.00392; mu= 14.8278+/- 0.263 mean_var=68.0549+/-15.674, 0's: 0 Z-trim: 7 B-trim: 135 in 1/35 Lambda= 0.1555 FASTA (3.45 Mar 2002) function [optimized, BL50 matrix (15:-5)] ktup: 2 join: 37, opt: 25, open/ext: -10/-2, width: 16 The best scores are: opt bits E(2168) mKIAA0388 ( 758 res) mbh00510 ( 758) 137 40 0.00069 mFLJ00189 ( 871 res) mbg21569 ( 871) 133 39 0.0014 mKIAA4065 ( 779 res) mpj03374 ( 779) 129 38 0.0024 mKIAA1563 ( 1652 res) mbg00767 (1652) 130 38 0.0035 >>mKIAA0388 ( 758 res) mbh00510 (758 aa) initn: 56 init1: 56 opt: 137 Z-score: 162.1 bits: 39.7 E(): 0.00069 Smith-Waterman score: 168; 25.940% identity (29.614% ungapped) in 266 aa overlap (108-358:496-743) 80 90 100 110 120 130 mKIAA1 EGYYVDDALQGQGVYTYEDGGVLQGTYVDGELNGPAQEYDSDGRL----IFKGQYKDNNR :: .:::. :: : : : .: mKIAA0 SIARLLGTKTCKQVFQFAVKESLILKLPTDELMNPAQKKKRKHRLWAAHCRKIQLKKDNN 470 480 490 500 510 520 140 150 160 170 180 mKIAA1 HGVCWIHYP-DGGSLVGEVNEDGEMTG---EKIAYVYPDQRTALYGKFIDGEMLEGKLAT . . : : . . . :: ::. :: .. . : . . mKIAA0 STQVYNYQPCDHPDRPCDSTCPCIMTQNFCEKFCQCSPDCQNRFPGCRCKTQCNTKQCPC 530 540 550 560 570 580 190 200 210 220 230 240 mKIAA1 LMATEEGRPHFEVTSGSSVYHFDKSTSSCISSDALLPDPYESERVYVADSLISSAGEGLF .:..: : . .: :.: :.: .. :: . . . .... .: : . :: : : mKIAA0 YLAVRECDPDLCLTCGAS-EHWDCKVVSCKNCSI---QRGLKKHLLLAPSDV--AGWGTF 590 600 610 620 630 250 260 270 280 290 300 mKIAA1 SKVAVGPNTVMSFYNGVRITHQEVDSR----DWALNGNTLSLDEETVIDVPEPYNHVSKY : .: : .: : : :...:.: : : ... ..:... :.:. . :.. .. mKIAA0 IKESVQKNEFISEYCGELISQDEADRRGKVYDKYMSSFLFNLNNDFVVDATRKGNKI-RF 640 650 660 670 680 690 310 320 330 340 350 360 mKIAA1 CASLGHKANHSFTPNCVYDLFV---HPRFGPIKCIRTLRAVEAEEELTVAYGYDHSPPGK :::: .::: . . :.: : . ::..: ::: : :... mKIAA0 -------ANHSVNPNCYAKVVMVNGDHRIG----IFAKRAIQAGEELFFDYRYSQADALK 700 710 720 730 740 370 380 mKIAA1 SGPEAPEWYQVELKAFQATQQK mKIAA0 YVGIERETDVF 750 >>mFLJ00189 ( 871 res) mbg21569 (871 aa) initn: 92 init1: 64 opt: 133 Z-score: 156.5 bits: 38.9 E(): 0.0014 Smith-Waterman score: 133; 26.357% identity (28.099% ungapped) in 129 aa overlap (27-149:451-577) 10 20 30 40 50 mKIAA1 QRDGSRPHGPGLGRVSAAMDSDDEVVEEAVEGHLDDDGLPHGFCTVTYSSTD---- .:. .:... :: ::: . . mFLJ00 PQASEDKFDCYKCHWREGRMCEYGICEYGTDEVYKGYFQA-GLRHGFGILESAPQAPQPF 430 440 450 460 470 60 70 80 90 100 110 mKIAA1 RFEGNFVHGEKNGRGKFFFFD-GSTLEGYYVDDALQGQGVYTYEDGGVLQGTYVDGELNG :. :.. .:...: : : : :.. : .: :: . . : :::. .. : mFLJ00 RYTGHWERGQRSGYGIEEDRDRGERYIGMWQADQRHGPGVVVTQAGVCYQGTFQGDKMAG 480 490 500 510 520 530 120 130 140 150 160 170 mKIAA1 PAQEYDSDGRLIFKGQY-KDNNRHGVCWIHYPDGGSLVGEVNEDGEMTGEKIAYVYPDQR :. : : ..: . .: . : . .:.: .: : mFLJ00 PGILLCEDDSL-YEGTFTRDLTLLGKGKVTFPNGFTLDGSFSSGTDKGLYTQGVLDTAAL 540 550 560 570 580 590 180 190 200 210 220 230 mKIAA1 TALYGKFIDGEMLEGKLATLMATEEGRPHFEVTSGSSVYHFDKSTSSCISSDALLPDPYE mFLJ00 PPDPSSTRKRQLGLGTFPVESRWQGVYSPFRDFLRLGCPGEQQEALLGFHTQSSRELRKS 600 610 620 630 640 650 >>mKIAA4065 ( 779 res) mpj03374 (779 aa) initn: 94 init1: 56 opt: 129 Z-score: 152.3 bits: 37.9 E(): 0.0024 Smith-Waterman score: 150; 26.857% identity (31.333% ungapped) in 175 aa overlap (191-358:608-764) 170 180 190 200 210 220 mKIAA1 KIAYVYPDQRTALYGKFIDGEMLEGKLATLMATEEGRPHFEVTSGSSVYHFDKSTSSCIS .:..: : . .: :.. :.:... :: . mKIAA4 KFCQCSSECQNRFPGCRCKAQCNTKQCPCYLAVRECDPDLCLTCGAA-DHWDSKNVSCKN 580 590 600 610 620 630 230 240 250 260 270 mKIAA1 SDALLPDPYESERVYVADSLISSAGEGLFSKVAVGPNTVMSFYNGVRITHQEVDSR---- . . .... .: : . :: :.: : : : .: : : :...:.: : mKIAA4 CSIQRGS---KKHLLLAPSDV--AGWGIFIKDPVQKNEFISEYCGEIISQDEADRRGKVY 640 650 660 670 680 690 280 290 300 310 320 330 mKIAA1 DWALNGNTLSLDEETVIDVPEPYNHVSKYCASLGHKANHSFTPNCVYDLFV---HPRFGP : . . ..:... :.:. . :.. .. :::: .::: ... :.: mKIAA4 DKYMCSFLFNLNNDFVVDATRKGNKI-RF-------ANHSVNPNCYAKVMMVNGDHRIG- 700 710 720 730 740 340 350 360 370 380 mKIAA1 IKCIRTLRAVEAEEELTVAYGYDHSPPGKSGPEAPEWYQVELKAFQATQQK : . ::... ::: : :... mKIAA4 ---IFAKRAIQTGEELFFDYRYSQADALKYVGIEREMEIP 750 760 770 >>mKIAA1563 ( 1652 res) mbg00767 (1652 aa) initn: 102 init1: 74 opt: 130 Z-score: 149.4 bits: 38.5 E(): 0.0035 Smith-Waterman score: 140; 28.261% identity (30.952% ungapped) in 184 aa overlap (28-201:1116-1293) 10 20 30 40 50 mKIAA1 QRDGSRPHGPGLGRVSAAMDSDDEVVEEAVEGHLDDDGLPHGFCT-----VTYSSTD :. :: ..:. . :: .: :: . mKIAA1 NKALNKEDHYVGHWKEGKMCGQGVYSYASGEVFEGCFQDN-MRHGHGLLRSGKLTSSSPS 1090 1100 1110 1120 1130 1140 60 70 80 90 100 110 mKIAA1 RFEGNFVHGEKNGRGKFF-FFDGSTLEGYYVDDALQGQGVYTYEDGGVLQGTYVDGELNG : :..: .: : : : . : :.. ::. ::.:: . . : .:.. ... : mKIAA1 MFIGQWVMDKKAGYGVFDDITRGEKYMGMWQDDVCQGNGVVVTQFGLYYEGNFHLNKMMG 1150 1160 1170 1180 1190 1200 120 130 140 150 160 mKIAA1 PAQEYDSDGRLIFKGQYKDN-NRHGVCWIHYPDGGSLVGEVNEDGEM-TGEKIAYVYPDQ . . : :..:...:. . : . .: : . : . :: .: ::. .: mKIAA1 NGVLLSEDDT-IYEGEFSDDWTLSGKGTLTMPHGDYIEGYFS--GEWGSGIKITGTYF-- 1210 1220 1230 1240 1250 170 180 190 200 210 220 mKIAA1 RTALYGKFIDGEMLEGKLATLM--ATEEGRPHFEVTSGSSVYHFDKSTSSCISSDALLPD . .:: . : ::..: : :. : :: mKIAA1 KPSLYESDKDKPKAFRKLGNLAVAADEKWRAVFEECWHQLGCESPGQGEVWKAWDNIAVA 1260 1270 1280 1290 1300 1310 230 240 250 260 270 280 mKIAA1 PYESERVYVADSLISSAGEGLFSKVAVGPNTVMSFYNGVRITHQEVDSRDWALNGNTLSL mKIAA1 LTTNRRQHKDSPEILSRSQTQTLESLEYIPQHIGAFSVEKYDDIKKYLIKACDTPLHPLG 1320 1330 1340 1350 1360 1370 384 residues in 1 query sequences 1768633 residues in 2168 library sequences Scomplib [34t11] start: Mon Mar 27 10:51:33 2006 done: Mon Mar 27 10:51:33 2006 Scan time: 0.590 Display time: 0.060 Function used was FASTA [version 3.4t11 Apr 17, 2002]