# /usr/local/bin/fasta34_t -T 4 -b50 -d10 -E0.01 -H -O./tmp/mpg00592.fasta.nr -Q ../query/mKIAA1542.ptfa /cdna4/rodent/rouge_util/new.rouge/nfasta/nr 2 FASTA searches a protein or DNA sequence data bank version 34.26.5 April 26, 2007 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 mKIAA1542, 1085 aa vs /cdna4/rodent/rouge_util/new.rouge/nfasta/nr library 2727779818 residues in 7921681 sequences statistics sampled from 60000 to 7901275 sequences Expectation_n fit: rho(ln(x))= 6.2392+/-0.000208; mu= 10.5034+/- 0.012 mean_var=146.3406+/-27.384, 0's: 29 Z-trim: 93 B-trim: 0 in 0/67 Lambda= 0.106021 FASTA (3.5 Sept 2006) function [optimized, BL50 matrix (15:-5)] ktup: 2 join: 39, opt: 27, open/ext: -10/-2, width: 16 The best scores are: opt bits E(7921681) gi|63100470|gb|AAH94566.1| Phrf1 protein [Mus musc (1215) 6014 932.7 0 gi|148878200|gb|AAI45720.1| Phrf1 protein [Mus mus (1523) 6014 932.8 0 gi|215275613|sp|A6H619.2|PHRF1_MOUSE RecName: Full (1682) 6014 932.8 0 gi|149061578|gb|EDM12001.1| CTD-binding SR-like pr (1473) 5256 816.8 0 gi|215275614|sp|Q63625.2|PHRF1_RAT RecName: Full=P (1685) 5256 816.9 0 gi|1438534|gb|AAC52658.1| rA9 gi|20806131|ref| (1473) 5247 815.4 0 gi|74216771|dbj|BAE37789.1| unnamed protein produc ( 696) 2866 450.9 1.1e-123 gi|219519077|gb|AAI44295.1| PHRF1 protein [Homo sa (1645) 2585 408.3 1.7e-110 gi|223459674|gb|AAI36616.1| PHD and ring finger do (1649) 2585 408.3 1.7e-110 gi|219518215|gb|AAI44296.1| PHRF1 protein [Homo sa (1647) 2583 408.0 2.1e-110 gi|219520425|gb|AAI44294.1| PHRF1 protein [Homo sa (1648) 2583 408.0 2.1e-110 gi|119622758|gb|EAX02353.1| CTD-binding SR-like pr (1649) 2583 408.0 2.1e-110 gi|20987470|gb|AAH29651.1| PHRF1 protein [Homo sap (1080) 2490 393.6 3.1e-106 gi|73982124|ref|XP_540525.2| PREDICTED: similar to (1636) 2378 376.7 5.8e-101 gi|114635394|ref|XP_508199.2| PREDICTED: CTD-bindi (1645) 2182 346.7 6.2e-92 gi|74216544|dbj|BAE37717.1| unnamed protein produc ( 538) 1921 306.2 3.1e-80 gi|126344252|ref|XP_001380951.1| PREDICTED: simila (1366) 1810 289.7 7.3e-75 gi|109104858|ref|XP_001086134.1| PREDICTED: simila (1640) 1774 284.3 3.8e-73 gi|33311814|gb|AAH55395.1| Phrf1 protein [Mus musc ( 330) 1200 195.7 3.5e-47 gi|148686076|gb|EDL18023.1| mCG145263, isoform CRA ( 302) 1184 193.2 1.8e-46 gi|26334887|dbj|BAC31144.1| unnamed protein produc ( 283) 1175 191.8 4.5e-46 gi|74205938|dbj|BAE23241.1| unnamed protein produc ( 279) 1147 187.5 8.6e-45 gi|148686075|gb|EDL18022.1| mCG145263, isoform CRA ( 310) 1147 187.6 9.3e-45 gi|157743107|gb|AAI49468.1| LOC100126170 protein [ (1408) 1128 185.4 1.9e-43 gi|40225923|gb|AAH13381.1| PHRF1 protein [Homo sap ( 530) 1070 176.0 4.6e-41 gi|149061580|gb|EDM12003.1| CTD-binding SR-like pr ( 170) 1053 172.9 1.3e-40 gi|27371336|gb|AAH41631.1| PHRF1 protein [Homo sap ( 401) 1040 171.3 9.3e-40 gi|13436320|gb|AAH04950.1| PHRF1 protein [Homo sap ( 322) 992 163.9 1.3e-37 gi|224050955|ref|XP_002198347.1| PREDICTED: hypoth (1044) 740 125.9 1.1e-25 gi|149032209|gb|EDL87121.1| rCG50794, isoform CRA_ (1424) 584 102.2 2.1e-18 gi|12848621|dbj|BAB28024.1| unnamed protein produc (1158) 575 100.7 4.8e-18 gi|117647277|ref|NP_082424.2| splicing factor, arg (1456) 575 100.8 5.6e-18 gi|148672295|gb|EDL04242.1| splicing factor, argin (1462) 575 100.8 5.6e-18 gi|148672294|gb|EDL04241.1| splicing factor, argin (1463) 575 100.8 5.6e-18 gi|73997071|ref|XP_534828.2| PREDICTED: similar to (1568) 556 97.9 4.4e-17 gi|114645171|ref|XP_001165167.1| PREDICTED: splici (1437) 544 96.1 1.5e-16 gi|109096230|ref|XP_001093213.1| PREDICTED: simila (1438) 544 96.1 1.5e-16 gi|114645175|ref|XP_001165059.1| PREDICTED: splici (1380) 540 95.4 2.2e-16 gi|210102677|gb|EEA50723.1| hypothetical protein B (1727) 536 94.9 3.9e-16 gi|109096238|ref|XP_001093549.1| PREDICTED: simila (1075) 524 92.9 1e-15 gi|55962615|emb|CAI11587.1| novel protein [Danio r ( 964) 522 92.5 1.2e-15 gi|189517869|ref|XP_694845.3| PREDICTED: splicing (1089) 522 92.6 1.3e-15 gi|118082345|ref|XP_416047.2| PREDICTED: similar t (1361) 520 92.4 1.8e-15 gi|121934132|gb|AAI27877.1| Unknown (protein for I ( 87) 500 88.0 2.5e-15 gi|73947956|ref|XP_541491.2| PREDICTED: similar to (1132) 499 89.1 1.5e-14 gi|109096232|ref|XP_001093675.1| PREDICTED: simila (1148) 488 87.4 4.9e-14 gi|9438033|gb|AAF87552.1|AF254411_1 ser/arg-rich p (1312) 487 87.3 5.9e-14 gi|158564012|sp|Q9H7N4.2|SFR19_HUMAN RecName: Full (1312) 487 87.3 5.9e-14 gi|10440402|dbj|BAB15734.1| FLJ00034 protein [Homo (1343) 487 87.3 6e-14 gi|118091344|ref|XP_423776.2| PREDICTED: similar t (1153) 485 86.9 6.7e-14 >>gi|63100470|gb|AAH94566.1| Phrf1 protein [Mus musculus (1215 aa) initn: 7142 init1: 6009 opt: 6014 Z-score: 4976.1 bits: 932.7 E(): 0 Smith-Waterman score: 6996; 93.444% identity (93.444% similar) in 1144 aa overlap (17-1085:72-1215) 10 20 30 40 mKIAA1 TCYRRWEGLLSDFCFLAPVSLQRNSVTQSREESRLRDNPQPGALPS :::::::::::::::::::::::::::::: gi|631 GSILSGQSLLMMSSADVVIHRDGSLSAKRAAPVSLQRNSVTQSREESRLRDNPQPGALPS 50 60 70 80 90 100 50 60 70 80 90 100 mKIAA1 ESASGGFVGDRQPNSGLSCGNRTALCCLPARIAQTPVRSDPSLTPRSGLSRTLSDENRPS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|631 ESASGGFVGDRQPNSGLSCGNRTALCCLPARIAQTPVRSDPSLTPRSGLSRTLSDENRPS 110 120 130 140 150 160 110 120 130 140 150 160 mKIAA1 RTHSSSPQLNGSNVRVSSASTKIVTHSSFPSKNTASGLPQRTGPRRPDFSKLPRIPKIHR :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|631 RTHSSSPQLNGSNVRVSSASTKIVTHSSFPSKNTASGLPQRTGPRRPDFSKLPRIPKIHR 170 180 190 200 210 220 170 180 190 200 210 220 mKIAA1 DGNKSTQDQAPASGHIVELPSTCISRLTGREGPGQPGRGRVDSEPSSRGPQETGSHTSGS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|631 DGNKSTQDQAPASGHIVELPSTCISRLTGREGPGQPGRGRVDSEPSSRGPQETGSHTSGS 230 240 250 260 270 280 230 240 250 260 270 280 mKIAA1 RPPAPSSHGSLAHLGPSRGKGIGSSFESFRINIPGNTAHCSQLSSPGFCNTFRPVDSKVQ :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|631 RPPAPSSHGSLAHLGPSRGKGIGSSFESFRINIPGNTAHCSQLSSPGFCNTFRPVDSKVQ 290 300 310 320 330 340 290 300 310 320 330 340 mKIAA1 RKETPFPLFSIKKPKQLKSEIYDPFDPTGSDSSPPSSSPESLGPGLLPSEITRTISINSP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|631 RKETPFPLFSIKKPKQLKSEIYDPFDPTGSDSSPPSSSPESLGPGLLPSEITRTISINSP 350 360 370 380 390 400 350 360 370 380 390 400 mKIAA1 KAPAFQTVRCVTSYRVESIFGTEMEPEPQPPSEPVSGMLELLSKGSAEGTSDLEQEGLGE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|631 KAPAFQTVRCVTSYRVESIFGTEMEPEPQPPSEPVSGMLELLSKGSAEGTSDLEQEGLGE 410 420 430 440 450 460 410 420 430 440 450 460 mKIAA1 IEPTEIRGSTARTQRPPPPDPWDDEDEVSCTPFFGSEERTVTCVTVEEPGVLPSPDAPQI :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|631 IEPTEIRGSTARTQRPPPPDPWDDEDEVSCTPFFGSEERTVTCVTVEEPGVLPSPDAPQI 470 480 490 500 510 520 470 480 490 500 510 520 mKIAA1 TTHRIVEFRASSRSRSTSSSRSRKKTKKKKKKVAREHQRTRSSTRSGSRDRTSRSVSPVA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|631 TTHRIVEFRASSRSRSTSSSRSRKKTKKKKKKVAREHQRTRSSTRSGSRDRTSRSVSPVA 530 540 550 560 570 580 530 540 550 560 570 580 mKIAA1 EEHTRRHRAKTKSRRSSSDRASSQDRAKRRKDRDDRDREHRRGSWGHGRCRRKSRSRSGS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|631 EEHTRRHRAKTKSRRSSSDRASSQDRAKRRKDRDDRDREHRRGSWGHGRCRRKSRSRSGS 590 600 610 620 630 640 590 600 610 620 630 640 mKIAA1 PGSSSCERHESKRRKRRHSGSRSRGSSLERDRRHKHRERSRERMDKQESVTRSRERRRWR :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|631 PGSSSCERHESKRRKRRHSGSRSRGSSLERDRRHKHRERSRERMDKQESVTRSRERRRWR 650 660 670 680 690 700 650 660 670 680 690 700 mKIAA1 SRSPSLEHRPRRPPSREKRAHSPEKKGPVREVSPAPATQGESRQDGDHSAEPPVSEVSVL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|631 SRSPSLEHRPRRPPSREKRAHSPEKKGPVREVSPAPATQGESRQDGDHSAEPPVSEVSVL 710 720 730 740 750 760 710 720 730 740 750 760 mKIAA1 PEVVSVLPEVVVADLNPPEVPPVLAEPVAHVPEDLDYGESVEAGHVFEDFSNEAIFIQLD :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|631 PEVVSVLPEVVVADLNPPEVPPVLAEPVAHVPEDLDYGESVEAGHVFEDFSNEAIFIQLD 770 780 790 800 810 820 770 780 790 800 810 820 mKIAA1 DMSSPPSPESTDSSPERDFPPNPILPPASLPQDSTLPTIQREVLPIHSEDISKPVPQALA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|631 DMSSPPSPESTDSSPERDFPPNPILPPASLPQDSTLPTIQREVLPIHSEDISKPVPQALA 830 840 850 860 870 880 830 840 850 860 870 880 mKIAA1 PSDQSLLKQDTVEITTTTPSTPAVVPMTKDSPVLSARGWEAVRPRDAVAQAPLLRSRTLV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|631 PSDQSLLKQDTVEITTTTPSTPAVVPMTKDSPVLSARGWEAVRPRDAVAQAPLLRSRTLV 890 900 910 920 930 940 890 900 mKIAA1 KRVTWNLQEAEHSTPAALDRDP-------------------------------------- :::::::::::::::::::::: gi|631 KRVTWNLQEAEHSTPAALDRDPRTPLQRPQRPQEGDWDAEDRALIGFQQAPFSELPPPIH 950 960 970 980 990 1000 910 920 930 mKIAA1 -------------------------------------AQVYSPNMPPPLAQPSSILPYAL ::::::::::::::::::::::: gi|631 VLQESGLPDADPSQPPGAPRAEGLPAAGTLHSAGGILAQVYSPNMPPPLAQPSSILPYAL 1010 1020 1030 1040 1050 1060 940 950 960 970 980 990 mKIAA1 VSQPSVQLILQGTLPLAGCGTAQSLAPVPTMPATVSELAVPTTNNSEERTATPKTAAEKT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|631 VSQPSVQLILQGTLPLAGCGTAQSLAPVPTMPATVSELAVPTTNNSEERTATPKTAAEKT 1070 1080 1090 1100 1110 1120 1000 1010 1020 1030 1040 1050 mKIAA1 KKEEYMKKLHMQERAVEEVKLAIKPFYQKREVTKEEYKDILRKAVQKICHSKSGEINPVK :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|631 KKEEYMKKLHMQERAVEEVKLAIKPFYQKREVTKEEYKDILRKAVQKICHSKSGEINPVK 1130 1140 1150 1160 1170 1180 1060 1070 1080 mKIAA1 VANLVKAYVDKYRHMRRHKKTEGGEEPPTQGAET :::::::::::::::::::::::::::::::::: gi|631 VANLVKAYVDKYRHMRRHKKTEGGEEPPTQGAET 1190 1200 1210 >>gi|148878200|gb|AAI45720.1| Phrf1 protein [Mus musculu (1523 aa) initn: 7142 init1: 6009 opt: 6014 Z-score: 4974.9 bits: 932.8 E(): 0 Smith-Waterman score: 6996; 93.444% identity (93.444% similar) in 1144 aa overlap (17-1085:380-1523) 10 20 30 40 mKIAA1 TCYRRWEGLLSDFCFLAPVSLQRNSVTQSREESRLRDNPQPGALPS :::::::::::::::::::::::::::::: gi|148 GSILSGQSLLMMSSADVVIHRDGSLSAKRAAPVSLQRNSVTQSREESRLRDNPQPGALPS 350 360 370 380 390 400 50 60 70 80 90 100 mKIAA1 ESASGGFVGDRQPNSGLSCGNRTALCCLPARIAQTPVRSDPSLTPRSGLSRTLSDENRPS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|148 ESASGGFVGDRQPNSGLSCGNRTALCCLPARIAQTPVRSDPSLTPRSGLSRTLSDENRPS 410 420 430 440 450 460 110 120 130 140 150 160 mKIAA1 RTHSSSPQLNGSNVRVSSASTKIVTHSSFPSKNTASGLPQRTGPRRPDFSKLPRIPKIHR :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|148 RTHSSSPQLNGSNVRVSSASTKIVTHSSFPSKNTASGLPQRTGPRRPDFSKLPRIPKIHR 470 480 490 500 510 520 170 180 190 200 210 220 mKIAA1 DGNKSTQDQAPASGHIVELPSTCISRLTGREGPGQPGRGRVDSEPSSRGPQETGSHTSGS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|148 DGNKSTQDQAPASGHIVELPSTCISRLTGREGPGQPGRGRVDSEPSSRGPQETGSHTSGS 530 540 550 560 570 580 230 240 250 260 270 280 mKIAA1 RPPAPSSHGSLAHLGPSRGKGIGSSFESFRINIPGNTAHCSQLSSPGFCNTFRPVDSKVQ :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|148 RPPAPSSHGSLAHLGPSRGKGIGSSFESFRINIPGNTAHCSQLSSPGFCNTFRPVDSKVQ 590 600 610 620 630 640 290 300 310 320 330 340 mKIAA1 RKETPFPLFSIKKPKQLKSEIYDPFDPTGSDSSPPSSSPESLGPGLLPSEITRTISINSP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|148 RKETPFPLFSIKKPKQLKSEIYDPFDPTGSDSSPPSSSPESLGPGLLPSEITRTISINSP 650 660 670 680 690 700 350 360 370 380 390 400 mKIAA1 KAPAFQTVRCVTSYRVESIFGTEMEPEPQPPSEPVSGMLELLSKGSAEGTSDLEQEGLGE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|148 KAPAFQTVRCVTSYRVESIFGTEMEPEPQPPSEPVSGMLELLSKGSAEGTSDLEQEGLGE 710 720 730 740 750 760 410 420 430 440 450 460 mKIAA1 IEPTEIRGSTARTQRPPPPDPWDDEDEVSCTPFFGSEERTVTCVTVEEPGVLPSPDAPQI :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|148 IEPTEIRGSTARTQRPPPPDPWDDEDEVSCTPFFGSEERTVTCVTVEEPGVLPSPDAPQI 770 780 790 800 810 820 470 480 490 500 510 520 mKIAA1 TTHRIVEFRASSRSRSTSSSRSRKKTKKKKKKVAREHQRTRSSTRSGSRDRTSRSVSPVA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|148 TTHRIVEFRASSRSRSTSSSRSRKKTKKKKKKVAREHQRTRSSTRSGSRDRTSRSVSPVA 830 840 850 860 870 880 530 540 550 560 570 580 mKIAA1 EEHTRRHRAKTKSRRSSSDRASSQDRAKRRKDRDDRDREHRRGSWGHGRCRRKSRSRSGS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|148 EEHTRRHRAKTKSRRSSSDRASSQDRAKRRKDRDDRDREHRRGSWGHGRCRRKSRSRSGS 890 900 910 920 930 940 590 600 610 620 630 640 mKIAA1 PGSSSCERHESKRRKRRHSGSRSRGSSLERDRRHKHRERSRERMDKQESVTRSRERRRWR :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|148 PGSSSCERHESKRRKRRHSGSRSRGSSLERDRRHKHRERSRERMDKQESVTRSRERRRWR 950 960 970 980 990 1000 650 660 670 680 690 700 mKIAA1 SRSPSLEHRPRRPPSREKRAHSPEKKGPVREVSPAPATQGESRQDGDHSAEPPVSEVSVL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|148 SRSPSLEHRPRRPPSREKRAHSPEKKGPVREVSPAPATQGESRQDGDHSAEPPVSEVSVL 1010 1020 1030 1040 1050 1060 710 720 730 740 750 760 mKIAA1 PEVVSVLPEVVVADLNPPEVPPVLAEPVAHVPEDLDYGESVEAGHVFEDFSNEAIFIQLD :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|148 PEVVSVLPEVVVADLNPPEVPPVLAEPVAHVPEDLDYGESVEAGHVFEDFSNEAIFIQLD 1070 1080 1090 1100 1110 1120 770 780 790 800 810 820 mKIAA1 DMSSPPSPESTDSSPERDFPPNPILPPASLPQDSTLPTIQREVLPIHSEDISKPVPQALA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|148 DMSSPPSPESTDSSPERDFPPNPILPPASLPQDSTLPTIQREVLPIHSEDISKPVPQALA 1130 1140 1150 1160 1170 1180 830 840 850 860 870 880 mKIAA1 PSDQSLLKQDTVEITTTTPSTPAVVPMTKDSPVLSARGWEAVRPRDAVAQAPLLRSRTLV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|148 PSDQSLLKQDTVEITTTTPSTPAVVPMTKDSPVLSARGWEAVRPRDAVAQAPLLRSRTLV 1190 1200 1210 1220 1230 1240 890 900 mKIAA1 KRVTWNLQEAEHSTPAALDRDP-------------------------------------- :::::::::::::::::::::: gi|148 KRVTWNLQEAEHSTPAALDRDPRTPLQRPQRPQEGDWDAEDRALIGFQQAPFSELPPPIH 1250 1260 1270 1280 1290 1300 910 920 930 mKIAA1 -------------------------------------AQVYSPNMPPPLAQPSSILPYAL ::::::::::::::::::::::: gi|148 VLQESGLPDADPSQPPGAPRAEGLPAAGTLHSAGGILAQVYSPNMPPPLAQPSSILPYAL 1310 1320 1330 1340 1350 1360 940 950 960 970 980 990 mKIAA1 VSQPSVQLILQGTLPLAGCGTAQSLAPVPTMPATVSELAVPTTNNSEERTATPKTAAEKT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|148 VSQPSVQLILQGTLPLAGCGTAQSLAPVPTMPATVSELAVPTTNNSEERTATPKTAAEKT 1370 1380 1390 1400 1410 1420 1000 1010 1020 1030 1040 1050 mKIAA1 KKEEYMKKLHMQERAVEEVKLAIKPFYQKREVTKEEYKDILRKAVQKICHSKSGEINPVK :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|148 KKEEYMKKLHMQERAVEEVKLAIKPFYQKREVTKEEYKDILRKAVQKICHSKSGEINPVK 1430 1440 1450 1460 1470 1480 1060 1070 1080 mKIAA1 VANLVKAYVDKYRHMRRHKKTEGGEEPPTQGAET :::::::::::::::::::::::::::::::::: gi|148 VANLVKAYVDKYRHMRRHKKTEGGEEPPTQGAET 1490 1500 1510 1520 >>gi|215275613|sp|A6H619.2|PHRF1_MOUSE RecName: Full=PHD (1682 aa) initn: 7142 init1: 6009 opt: 6014 Z-score: 4974.4 bits: 932.8 E(): 0 Smith-Waterman score: 6996; 93.444% identity (93.444% similar) in 1144 aa overlap (17-1085:539-1682) 10 20 30 40 mKIAA1 TCYRRWEGLLSDFCFLAPVSLQRNSVTQSREESRLRDNPQPGALPS :::::::::::::::::::::::::::::: gi|215 GSILSGQSLLMMSSADVVIHRDGSLSAKRAAPVSLQRNSVTQSREESRLRDNPQPGALPS 510 520 530 540 550 560 50 60 70 80 90 100 mKIAA1 ESASGGFVGDRQPNSGLSCGNRTALCCLPARIAQTPVRSDPSLTPRSGLSRTLSDENRPS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|215 ESASGGFVGDRQPNSGLSCGNRTALCCLPARIAQTPVRSDPSLTPRSGLSRTLSDENRPS 570 580 590 600 610 620 110 120 130 140 150 160 mKIAA1 RTHSSSPQLNGSNVRVSSASTKIVTHSSFPSKNTASGLPQRTGPRRPDFSKLPRIPKIHR :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|215 RTHSSSPQLNGSNVRVSSASTKIVTHSSFPSKNTASGLPQRTGPRRPDFSKLPRIPKIHR 630 640 650 660 670 680 170 180 190 200 210 220 mKIAA1 DGNKSTQDQAPASGHIVELPSTCISRLTGREGPGQPGRGRVDSEPSSRGPQETGSHTSGS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|215 DGNKSTQDQAPASGHIVELPSTCISRLTGREGPGQPGRGRVDSEPSSRGPQETGSHTSGS 690 700 710 720 730 740 230 240 250 260 270 280 mKIAA1 RPPAPSSHGSLAHLGPSRGKGIGSSFESFRINIPGNTAHCSQLSSPGFCNTFRPVDSKVQ :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|215 RPPAPSSHGSLAHLGPSRGKGIGSSFESFRINIPGNTAHCSQLSSPGFCNTFRPVDSKVQ 750 760 770 780 790 800 290 300 310 320 330 340 mKIAA1 RKETPFPLFSIKKPKQLKSEIYDPFDPTGSDSSPPSSSPESLGPGLLPSEITRTISINSP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|215 RKETPFPLFSIKKPKQLKSEIYDPFDPTGSDSSPPSSSPESLGPGLLPSEITRTISINSP 810 820 830 840 850 860 350 360 370 380 390 400 mKIAA1 KAPAFQTVRCVTSYRVESIFGTEMEPEPQPPSEPVSGMLELLSKGSAEGTSDLEQEGLGE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|215 KAPAFQTVRCVTSYRVESIFGTEMEPEPQPPSEPVSGMLELLSKGSAEGTSDLEQEGLGE 870 880 890 900 910 920 410 420 430 440 450 460 mKIAA1 IEPTEIRGSTARTQRPPPPDPWDDEDEVSCTPFFGSEERTVTCVTVEEPGVLPSPDAPQI :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|215 IEPTEIRGSTARTQRPPPPDPWDDEDEVSCTPFFGSEERTVTCVTVEEPGVLPSPDAPQI 930 940 950 960 970 980 470 480 490 500 510 520 mKIAA1 TTHRIVEFRASSRSRSTSSSRSRKKTKKKKKKVAREHQRTRSSTRSGSRDRTSRSVSPVA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|215 TTHRIVEFRASSRSRSTSSSRSRKKTKKKKKKVAREHQRTRSSTRSGSRDRTSRSVSPVA 990 1000 1010 1020 1030 1040 530 540 550 560 570 580 mKIAA1 EEHTRRHRAKTKSRRSSSDRASSQDRAKRRKDRDDRDREHRRGSWGHGRCRRKSRSRSGS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|215 EEHTRRHRAKTKSRRSSSDRASSQDRAKRRKDRDDRDREHRRGSWGHGRCRRKSRSRSGS 1050 1060 1070 1080 1090 1100 590 600 610 620 630 640 mKIAA1 PGSSSCERHESKRRKRRHSGSRSRGSSLERDRRHKHRERSRERMDKQESVTRSRERRRWR :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|215 PGSSSCERHESKRRKRRHSGSRSRGSSLERDRRHKHRERSRERMDKQESVTRSRERRRWR 1110 1120 1130 1140 1150 1160 650 660 670 680 690 700 mKIAA1 SRSPSLEHRPRRPPSREKRAHSPEKKGPVREVSPAPATQGESRQDGDHSAEPPVSEVSVL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|215 SRSPSLEHRPRRPPSREKRAHSPEKKGPVREVSPAPATQGESRQDGDHSAEPPVSEVSVL 1170 1180 1190 1200 1210 1220 710 720 730 740 750 760 mKIAA1 PEVVSVLPEVVVADLNPPEVPPVLAEPVAHVPEDLDYGESVEAGHVFEDFSNEAIFIQLD :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|215 PEVVSVLPEVVVADLNPPEVPPVLAEPVAHVPEDLDYGESVEAGHVFEDFSNEAIFIQLD 1230 1240 1250 1260 1270 1280 770 780 790 800 810 820 mKIAA1 DMSSPPSPESTDSSPERDFPPNPILPPASLPQDSTLPTIQREVLPIHSEDISKPVPQALA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|215 DMSSPPSPESTDSSPERDFPPNPILPPASLPQDSTLPTIQREVLPIHSEDISKPVPQALA 1290 1300 1310 1320 1330 1340 830 840 850 860 870 880 mKIAA1 PSDQSLLKQDTVEITTTTPSTPAVVPMTKDSPVLSARGWEAVRPRDAVAQAPLLRSRTLV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|215 PSDQSLLKQDTVEITTTTPSTPAVVPMTKDSPVLSARGWEAVRPRDAVAQAPLLRSRTLV 1350 1360 1370 1380 1390 1400 890 900 mKIAA1 KRVTWNLQEAEHSTPAALDRDP-------------------------------------- :::::::::::::::::::::: gi|215 KRVTWNLQEAEHSTPAALDRDPRTPLQRPQRPQEGDWDAEDRALIGFQQAPFSELPPPIH 1410 1420 1430 1440 1450 1460 910 920 930 mKIAA1 -------------------------------------AQVYSPNMPPPLAQPSSILPYAL ::::::::::::::::::::::: gi|215 VLQESGLPDADPSQPPGAPRAEGLPAAGTLHSAGGILAQVYSPNMPPPLAQPSSILPYAL 1470 1480 1490 1500 1510 1520 940 950 960 970 980 990 mKIAA1 VSQPSVQLILQGTLPLAGCGTAQSLAPVPTMPATVSELAVPTTNNSEERTATPKTAAEKT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|215 VSQPSVQLILQGTLPLAGCGTAQSLAPVPTMPATVSELAVPTTNNSEERTATPKTAAEKT 1530 1540 1550 1560 1570 1580 1000 1010 1020 1030 1040 1050 mKIAA1 KKEEYMKKLHMQERAVEEVKLAIKPFYQKREVTKEEYKDILRKAVQKICHSKSGEINPVK :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|215 KKEEYMKKLHMQERAVEEVKLAIKPFYQKREVTKEEYKDILRKAVQKICHSKSGEINPVK 1590 1600 1610 1620 1630 1640 1060 1070 1080 mKIAA1 VANLVKAYVDKYRHMRRHKKTEGGEEPPTQGAET :::::::::::::::::::::::::::::::::: gi|215 VANLVKAYVDKYRHMRRHKKTEGGEEPPTQGAET 1650 1660 1670 1680 >>gi|149061578|gb|EDM12001.1| CTD-binding SR-like protei (1473 aa) initn: 5479 init1: 2722 opt: 5256 Z-score: 4348.5 bits: 816.8 E(): 0 Smith-Waterman score: 6191; 83.391% identity (88.957% similar) in 1150 aa overlap (17-1085:330-1473) 10 20 30 40 mKIAA1 TCYRRWEGLLSDFCFLAPVSLQRNSVTQSREESRLRDNPQPGALPS :::::::::::::::::::::: ::::::: gi|149 GSILCGQSLLMMSSADVVIHRDGSLSAKRAAPVSLQRNSVTQSREESRLRDNLQPGALPS 300 310 320 330 340 350 50 60 70 80 90 100 mKIAA1 ESASGGFVGDRQPNSGLSCGNRTALCCLPARIAQTPVRSDPSLTPRSGLSRTLSDENRPS ::.:::..:::.::::::::.:::: ::::.:.::::::: :.::::::: .::::.::. gi|149 ESVSGGLIGDRRPNSGLSCGDRTALRCLPAQIVQTPVRSDSSVTPRSGLSGNLSDESRPK 360 370 380 390 400 410 110 120 130 140 150 160 mKIAA1 RTHSSSPQLNGSNVRVSSASTKIVTHSSFPSKNTASGLPQRTGPRRPDFSKLPRIPKIHR ::.::.::::::::.::::: .:::.::::: : : ::.: :::::::::::::::.: gi|149 WKHSNSPRLNGSNVRVGSASTKTMTHSNFPSKNIAPGHPQKTDPRRPDFSKLPRIPKIRR 420 430 440 450 460 470 170 180 190 200 210 220 mKIAA1 DGNKSTQDQAPASGHIVELPSTCISRLTGREGPGQPGRGRVDSEPSSRGPQETGSHTSGS ::..::::::::::. :::::.::::::::::::::::::.::::::::::::::::::: gi|149 DGSNSTQDQAPASGQTVELPSACISRLTGREGPGQPGRGRADSEPSSRGPQETGSHTSGS 480 490 500 510 520 530 230 240 250 260 270 280 mKIAA1 RPPAPSSHGSLAHLGPSRGKGIGSSFESFRINIPGNTAHCSQLSSPGFCNTFRPVDSKVQ :::::::::.:: ::::::::::::::::::::::::::::::::::::::::::::::: gi|149 RPPAPSSHGNLAPLGPSRGKGIGSSFESFRINIPGNTAHCSQLSSPGFCNTFRPVDSKVQ 540 550 560 570 580 590 290 300 310 320 330 340 mKIAA1 RKETPFPLFSIKKPKQLKSEIYDPFDPTGSDSSPPSSSPESLGPGLLPSEITRTISINSP :::.: ::::::::::::::::::::::::::::::::::::: :::::::::::::::: gi|149 RKENPSPLFSIKKPKQLKSEIYDPFDPTGSDSSPPSSSPESLGSGLLPSEITRTISINSP 600 610 620 630 640 650 350 360 370 380 390 400 mKIAA1 KAPAFQTVRCVTSYRVESIFGTEMEPEPQPPSEPVSGMLELLSKGSAEGTSDLEQEGLGE ::::::::::::::::::.:::::.:.::::.::::::::::.:: :::.:::::::::: gi|149 KAPAFQTVRCVTSYRVESVFGTEMDPDPQPPGEPVSGMLELLGKGPAEGASDLEQEGLGE 660 670 680 690 700 710 410 420 430 440 450 460 mKIAA1 IEPTEIRGSTARTQRPPPPDPWDDEDEVSCTPFFGSEERTVTCVTVEEPGVLPSPDAPQI ::::::.::.::.::: ::::::::: ::::::::::::::::::::::.: :::::::: gi|149 IEPTEIQGSSARAQRPSPPDPWDDEDGVSCTPFFGSEERTVTCVTVEEPSV-PSPDAPQI 720 730 740 750 760 770 470 480 490 500 510 520 mKIAA1 TTHRIVEFRASSRSRSTSSSRSRKKTKKKKKKVAREHQRTRSSTRSGSRDRTSRSVSPVA ::::::::::::::::::::::::::::::: :::::::::::::::::::::::::: . gi|149 TTHRIVEFRASSRSRSTSSSRSRKKTKKKKK-VAREHQRTRSSTRSGSRDRTSRSVSPFT 780 790 800 810 820 830 530 540 550 560 570 580 mKIAA1 EEHTRRHRAKTKSRRSSSDRASSQDRAKRRKDRDDRDREHRRGSWGHGRCRRKSRSRSGS ::::.:::::::::::::::::::::::::::: ::::::: :::::: ::::::::: gi|149 EEHTKRHRAKTKSRRSSSDRASSQDRAKRRKDR---DREHRRGPWGHGRCWRKSRSRSGS 840 850 860 870 880 890 590 600 610 620 630 640 mKIAA1 PGSSSCERHESKRRKRRHSGSRSRG------SSLERDRRHKHRERSRERMDKQESVTRSR :::::::::::.::::::::::::: :::::::::::::::::::::.::.:::: gi|149 PGSSSCERHESRRRKRRHSGSRSRGRDGSPHSSLERDRRHKHRERSRERMDKKESMTRSR 900 910 920 930 940 950 650 660 670 680 690 700 mKIAA1 ERRRWRSRSPSLEHRPRRPPSREKRAHSPEKKGPVREVSPAPATQGESRQDGDHSAEPPV :::::::::::.::: ::: ::::. ::::::: ::::::::: ::: :::::::..::: gi|149 ERRRWRSRSPSVEHRTRRPHSREKHPHSPEKKGAVREVSPAPAPQGEPRQDGDHSTKPPV 960 970 980 990 1000 1010 710 720 730 740 750 760 mKIAA1 SEVSVLPEVVSVLPEVVVADLNPPEVPPVLAEPVAHVPEDLDYGESVEAGHVFEDFSNEA :::::::::::::::::::::::::::::::: :. ::::::::.::::::::::::::: gi|149 SEVSVLPEVVSVLPEVVVADLNPPEVPPVLAESVSCVPEDLDYGDSVEAGHVFEDFSNEA 1020 1030 1040 1050 1060 1070 770 780 790 800 810 820 mKIAA1 IFIQLDDMSSPPSPESTDSSPERDFPPNPILPPASLPQDSTLPTIQREVLPIHSEDISKP ::::::::::::::::::::::::: ::::::::::::.::::. ::::::::::::::: gi|149 IFIQLDDMSSPPSPESTDSSPERDFLPNPILPPASLPQNSTLPVTQREVLPIHSEDISKP 1080 1090 1100 1110 1120 1130 830 840 850 860 870 880 mKIAA1 VPQALAPSDQSLLKQDTVEITTTTPSTPAVVPMTKDSPVLSARGWEAVRPRDAVAQAPLL .:: :::::: ::.::::: :.:: :::.:.:: ::::.::.:: :.:::.:::: :::: gi|149 APQPLAPSDQCLLRQDTVETTATTLSTPGVLPMGKDSPLLSGRGCEVVRPKDAVAPAPLL 1140 1150 1160 1170 1180 1190 890 900 mKIAA1 RSRTLVKRVTWNLQEAEHSTPAALDRDP-------------------------------- ::::::::::::::::: :::: ::::: gi|149 RSRTLVKRVTWNLQEAEASTPA-LDRDPRTPLQRPQRPQEGDWDAEDRALIGFQQAPFSE 1200 1210 1220 1230 1240 1250 910 920 mKIAA1 -------------------------------------------AQVYSPNMPPPLAQPSS ::::::::::::::::: gi|149 LPPPIHVLQESGLPDADPSQPPGVPRAEGPPAVGTLHSAGGILAQVYSPNMPPPLAQPSS 1260 1270 1280 1290 1300 1310 930 940 950 960 970 980 mKIAA1 ILPYALVSQPSVQLILQGTLPLAGCGTAQSLAPVPTMPATVSELAVPTTNNSEERTATPK : :::::.:::::::::::::::.::.::.::::::::::.::::::::::::::::::: gi|149 IPPYALVNQPSVQLILQGTLPLASCGAAQNLAPVPTMPATASELAVPTTNNSEERTATPK 1320 1330 1340 1350 1360 1370 990 1000 1010 1020 1030 1040 mKIAA1 TAAEKTKKEEYMKKLHMQERAVEEVKLAIKPFYQKREVTKEEYKDILRKAVQKICHSKSG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|149 TAAEKTKKEEYMKKLHMQERAVEEVKLAIKPFYQKREVTKEEYKDILRKAVQKICHSKSG 1380 1390 1400 1410 1420 1430 1050 1060 1070 1080 mKIAA1 EINPVKVANLVKAYVDKYRHMRRHKKTEGGEEPPTQGAET ::::::::::::::::::::::.:::::.::::::::::: gi|149 EINPVKVANLVKAYVDKYRHMRKHKKTEAGEEPPTQGAET 1440 1450 1460 1470 >>gi|215275614|sp|Q63625.2|PHRF1_RAT RecName: Full=PHD a (1685 aa) initn: 5479 init1: 2722 opt: 5256 Z-score: 4347.8 bits: 816.9 E(): 0 Smith-Waterman score: 6191; 83.391% identity (88.957% similar) in 1150 aa overlap (17-1085:542-1685) 10 20 30 40 mKIAA1 TCYRRWEGLLSDFCFLAPVSLQRNSVTQSREESRLRDNPQPGALPS :::::::::::::::::::::: ::::::: gi|215 GSILCGQSLLMMSSADVVIHRDGSLSAKRAAPVSLQRNSVTQSREESRLRDNLQPGALPS 520 530 540 550 560 570 50 60 70 80 90 100 mKIAA1 ESASGGFVGDRQPNSGLSCGNRTALCCLPARIAQTPVRSDPSLTPRSGLSRTLSDENRPS ::.:::..:::.::::::::.:::: ::::.:.::::::: :.::::::: .::::.::. gi|215 ESVSGGLIGDRRPNSGLSCGDRTALRCLPAQIVQTPVRSDSSVTPRSGLSGNLSDESRPK 580 590 600 610 620 630 110 120 130 140 150 160 mKIAA1 RTHSSSPQLNGSNVRVSSASTKIVTHSSFPSKNTASGLPQRTGPRRPDFSKLPRIPKIHR ::.::.::::::::.::::: .:::.::::: : : ::.: :::::::::::::::.: gi|215 WKHSNSPRLNGSNVRVGSASTKTMTHSNFPSKNIAPGHPQKTDPRRPDFSKLPRIPKIRR 640 650 660 670 680 690 170 180 190 200 210 220 mKIAA1 DGNKSTQDQAPASGHIVELPSTCISRLTGREGPGQPGRGRVDSEPSSRGPQETGSHTSGS ::..::::::::::. :::::.::::::::::::::::::.::::::::::::::::::: gi|215 DGSNSTQDQAPASGQTVELPSACISRLTGREGPGQPGRGRADSEPSSRGPQETGSHTSGS 700 710 720 730 740 750 230 240 250 260 270 280 mKIAA1 RPPAPSSHGSLAHLGPSRGKGIGSSFESFRINIPGNTAHCSQLSSPGFCNTFRPVDSKVQ :::::::::.:: ::::::::::::::::::::::::::::::::::::::::::::::: gi|215 RPPAPSSHGNLAPLGPSRGKGIGSSFESFRINIPGNTAHCSQLSSPGFCNTFRPVDSKVQ 760 770 780 790 800 810 290 300 310 320 330 340 mKIAA1 RKETPFPLFSIKKPKQLKSEIYDPFDPTGSDSSPPSSSPESLGPGLLPSEITRTISINSP :::.: ::::::::::::::::::::::::::::::::::::: :::::::::::::::: gi|215 RKENPSPLFSIKKPKQLKSEIYDPFDPTGSDSSPPSSSPESLGSGLLPSEITRTISINSP 820 830 840 850 860 870 350 360 370 380 390 400 mKIAA1 KAPAFQTVRCVTSYRVESIFGTEMEPEPQPPSEPVSGMLELLSKGSAEGTSDLEQEGLGE ::::::::::::::::::.:::::.:.::::.::::::::::.:: :::.:::::::::: gi|215 KAPAFQTVRCVTSYRVESVFGTEMDPDPQPPGEPVSGMLELLGKGPAEGASDLEQEGLGE 880 890 900 910 920 930 410 420 430 440 450 460 mKIAA1 IEPTEIRGSTARTQRPPPPDPWDDEDEVSCTPFFGSEERTVTCVTVEEPGVLPSPDAPQI ::::::.::.::.::: ::::::::: ::::::::::::::::::::::.: :::::::: gi|215 IEPTEIQGSSARAQRPSPPDPWDDEDGVSCTPFFGSEERTVTCVTVEEPSV-PSPDAPQI 940 950 960 970 980 990 470 480 490 500 510 520 mKIAA1 TTHRIVEFRASSRSRSTSSSRSRKKTKKKKKKVAREHQRTRSSTRSGSRDRTSRSVSPVA ::::::::::::::::::::::::::::::: :::::::::::::::::::::::::: . gi|215 TTHRIVEFRASSRSRSTSSSRSRKKTKKKKK-VAREHQRTRSSTRSGSRDRTSRSVSPFT 1000 1010 1020 1030 1040 530 540 550 560 570 580 mKIAA1 EEHTRRHRAKTKSRRSSSDRASSQDRAKRRKDRDDRDREHRRGSWGHGRCRRKSRSRSGS ::::.:::::::::::::::::::::::::::: ::::::: :::::: ::::::::: gi|215 EEHTKRHRAKTKSRRSSSDRASSQDRAKRRKDR---DREHRRGPWGHGRCWRKSRSRSGS 1050 1060 1070 1080 1090 1100 590 600 610 620 630 640 mKIAA1 PGSSSCERHESKRRKRRHSGSRSRG------SSLERDRRHKHRERSRERMDKQESVTRSR :::::::::::.::::::::::::: :::::::::::::::::::::.::.:::: gi|215 PGSSSCERHESRRRKRRHSGSRSRGRDGSPHSSLERDRRHKHRERSRERMDKKESMTRSR 1110 1120 1130 1140 1150 1160 650 660 670 680 690 700 mKIAA1 ERRRWRSRSPSLEHRPRRPPSREKRAHSPEKKGPVREVSPAPATQGESRQDGDHSAEPPV :::::::::::.::: ::: ::::. ::::::: ::::::::: ::: :::::::..::: gi|215 ERRRWRSRSPSVEHRTRRPHSREKHPHSPEKKGAVREVSPAPAPQGEPRQDGDHSTKPPV 1170 1180 1190 1200 1210 1220 710 720 730 740 750 760 mKIAA1 SEVSVLPEVVSVLPEVVVADLNPPEVPPVLAEPVAHVPEDLDYGESVEAGHVFEDFSNEA :::::::::::::::::::::::::::::::: :. ::::::::.::::::::::::::: gi|215 SEVSVLPEVVSVLPEVVVADLNPPEVPPVLAESVSCVPEDLDYGDSVEAGHVFEDFSNEA 1230 1240 1250 1260 1270 1280 770 780 790 800 810 820 mKIAA1 IFIQLDDMSSPPSPESTDSSPERDFPPNPILPPASLPQDSTLPTIQREVLPIHSEDISKP ::::::::::::::::::::::::: ::::::::::::.::::. ::::::::::::::: gi|215 IFIQLDDMSSPPSPESTDSSPERDFLPNPILPPASLPQNSTLPVTQREVLPIHSEDISKP 1290 1300 1310 1320 1330 1340 830 840 850 860 870 880 mKIAA1 VPQALAPSDQSLLKQDTVEITTTTPSTPAVVPMTKDSPVLSARGWEAVRPRDAVAQAPLL .:: :::::: ::.::::: :.:: :::.:.:: ::::.::.:: :.:::.:::: :::: gi|215 APQPLAPSDQCLLRQDTVETTATTLSTPGVLPMGKDSPLLSGRGCEVVRPKDAVAPAPLL 1350 1360 1370 1380 1390 1400 890 900 mKIAA1 RSRTLVKRVTWNLQEAEHSTPAALDRDP-------------------------------- ::::::::::::::::: :::: ::::: gi|215 RSRTLVKRVTWNLQEAEASTPA-LDRDPRTPLQRPQRPQEGDWDAEDRALIGFQQAPFSE 1410 1420 1430 1440 1450 1460 910 920 mKIAA1 -------------------------------------------AQVYSPNMPPPLAQPSS ::::::::::::::::: gi|215 LPPPIHVLQESGLPDADPSQPPGVPRAEGPPAVGTLHSAGGILAQVYSPNMPPPLAQPSS 1470 1480 1490 1500 1510 1520 930 940 950 960 970 980 mKIAA1 ILPYALVSQPSVQLILQGTLPLAGCGTAQSLAPVPTMPATVSELAVPTTNNSEERTATPK : :::::.:::::::::::::::.::.::.::::::::::.::::::::::::::::::: gi|215 IPPYALVNQPSVQLILQGTLPLASCGAAQNLAPVPTMPATASELAVPTTNNSEERTATPK 1530 1540 1550 1560 1570 1580 990 1000 1010 1020 1030 1040 mKIAA1 TAAEKTKKEEYMKKLHMQERAVEEVKLAIKPFYQKREVTKEEYKDILRKAVQKICHSKSG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|215 TAAEKTKKEEYMKKLHMQERAVEEVKLAIKPFYQKREVTKEEYKDILRKAVQKICHSKSG 1590 1600 1610 1620 1630 1640 1050 1060 1070 1080 mKIAA1 EINPVKVANLVKAYVDKYRHMRRHKKTEGGEEPPTQGAET ::::::::::::::::::::::.:::::.::::::::::: gi|215 EINPVKVANLVKAYVDKYRHMRKHKKTEAGEEPPTQGAET 1650 1660 1670 1680 >>gi|1438534|gb|AAC52658.1| rA9 gi|20806131|ref|NP_6 (1473 aa) initn: 5471 init1: 2713 opt: 5247 Z-score: 4341.1 bits: 815.4 E(): 0 Smith-Waterman score: 6183; 83.217% identity (88.783% similar) in 1150 aa overlap (17-1085:330-1473) 10 20 30 40 mKIAA1 TCYRRWEGLLSDFCFLAPVSLQRNSVTQSREESRLRDNPQPGALPS :::::::::::::::::::::: ::::::: gi|143 GSILCGQSLLMMSSADVVIHRDGSLSAKRAAPVSLQRNSVTQSREESRLRDNLQPGALPS 300 310 320 330 340 350 50 60 70 80 90 100 mKIAA1 ESASGGFVGDRQPNSGLSCGNRTALCCLPARIAQTPVRSDPSLTPRSGLSRTLSDENRPS ::.:::..:::.::::::::.:::: ::::.:.::::::: :..:::::: .::::.::. gi|143 ESVSGGLIGDRRPNSGLSCGDRTALRCLPAQIVQTPVRSDSSVSPRSGLSGNLSDESRPK 360 370 380 390 400 410 110 120 130 140 150 160 mKIAA1 RTHSSSPQLNGSNVRVSSASTKIVTHSSFPSKNTASGLPQRTGPRRPDFSKLPRIPKIHR ::.::.::::::::.::::: .:::.::::: : : ::.: :::::::::::::::.: gi|143 WKHSNSPRLNGSNVRVGSASTKTMTHSNFPSKNIAPGHPQKTDPRRPDFSKLPRIPKIRR 420 430 440 450 460 470 170 180 190 200 210 220 mKIAA1 DGNKSTQDQAPASGHIVELPSTCISRLTGREGPGQPGRGRVDSEPSSRGPQETGSHTSGS ::..::::::::::. :::::.::::::::::::::::::.::::::::::::::::::: gi|143 DGSNSTQDQAPASGQTVELPSACISRLTGREGPGQPGRGRADSEPSSRGPQETGSHTSGS 480 490 500 510 520 530 230 240 250 260 270 280 mKIAA1 RPPAPSSHGSLAHLGPSRGKGIGSSFESFRINIPGNTAHCSQLSSPGFCNTFRPVDSKVQ :::::::::.:: :::::::::::::::::::::::::::: :::::::::::::::::: gi|143 RPPAPSSHGNLAPLGPSRGKGIGSSFESFRINIPGNTAHCSPLSSPGFCNTFRPVDSKVQ 540 550 560 570 580 590 290 300 310 320 330 340 mKIAA1 RKETPFPLFSIKKPKQLKSEIYDPFDPTGSDSSPPSSSPESLGPGLLPSEITRTISINSP :::.: :::::::::::::::::::::::::::::::::::::: ::::::::::::::: gi|143 RKENPSPLFSIKKPKQLKSEIYDPFDPTGSDSSPPSSSPESLGPDLLPSEITRTISINSP 600 610 620 630 640 650 350 360 370 380 390 400 mKIAA1 KAPAFQTVRCVTSYRVESIFGTEMEPEPQPPSEPVSGMLELLSKGSAEGTSDLEQEGLGE ::::::::::::::::::.:::::.:.::::.::::::::::.:: :::.:::::::::: gi|143 KAPAFQTVRCVTSYRVESVFGTEMDPDPQPPGEPVSGMLELLGKGPAEGASDLEQEGLGE 660 670 680 690 700 710 410 420 430 440 450 460 mKIAA1 IEPTEIRGSTARTQRPPPPDPWDDEDEVSCTPFFGSEERTVTCVTVEEPGVLPSPDAPQI ::::::.::.::.::: ::::::::: ::::::::::::::::::::::.: :::::::: gi|143 IEPTEIQGSSARAQRPSPPDPWDDEDGVSCTPFFGSEERTVTCVTVEEPSV-PSPDAPQI 720 730 740 750 760 770 470 480 490 500 510 520 mKIAA1 TTHRIVEFRASSRSRSTSSSRSRKKTKKKKKKVAREHQRTRSSTRSGSRDRTSRSVSPVA ::::::::::::::::::::::::::::::: :::::::::::::::::::::::::: . gi|143 TTHRIVEFRASSRSRSTSSSRSRKKTKKKKK-VAREHQRTRSSTRSGSRDRTSRSVSPFT 780 790 800 810 820 830 530 540 550 560 570 580 mKIAA1 EEHTRRHRAKTKSRRSSSDRASSQDRAKRRKDRDDRDREHRRGSWGHGRCRRKSRSRSGS ::::.:::::::::::::::::::::::::::: ::::::: :::::: ::::::::: gi|143 EEHTKRHRAKTKSRRSSSDRASSQDRAKRRKDR---DREHRRGPWGHGRCWRKSRSRSGS 840 850 860 870 880 890 590 600 610 620 630 640 mKIAA1 PGSSSCERHESKRRKRRHSGSRSRG------SSLERDRRHKHRERSRERMDKQESVTRSR :::::::::::.::::::::::::: :::::::::::::::::::::.::.:::: gi|143 PGSSSCERHESRRRKRRHSGSRSRGRDGSPHSSLERDRRHKHRERSRERMDKKESMTRSR 900 910 920 930 940 950 650 660 670 680 690 700 mKIAA1 ERRRWRSRSPSLEHRPRRPPSREKRAHSPEKKGPVREVSPAPATQGESRQDGDHSAEPPV :::::::::::.::: ::: ::::. ::::::: ::::::::: ::: :::::::..::: gi|143 ERRRWRSRSPSVEHRTRRPHSREKHPHSPEKKGAVREVSPAPAPQGEPRQDGDHSTKPPV 960 970 980 990 1000 1010 710 720 730 740 750 760 mKIAA1 SEVSVLPEVVSVLPEVVVADLNPPEVPPVLAEPVAHVPEDLDYGESVEAGHVFEDFSNEA :::::::::::::::::::::::::::::::: :. ::::::::.::::::::::::::: gi|143 SEVSVLPEVVSVLPEVVVADLNPPEVPPVLAESVSCVPEDLDYGDSVEAGHVFEDFSNEA 1020 1030 1040 1050 1060 1070 770 780 790 800 810 820 mKIAA1 IFIQLDDMSSPPSPESTDSSPERDFPPNPILPPASLPQDSTLPTIQREVLPIHSEDISKP ::::::::::::::::::::::::: ::::::::::::.::::. ::::::::::::::: gi|143 IFIQLDDMSSPPSPESTDSSPERDFLPNPILPPASLPQNSTLPVTQREVLPIHSEDISKP 1080 1090 1100 1110 1120 1130 830 840 850 860 870 880 mKIAA1 VPQALAPSDQSLLKQDTVEITTTTPSTPAVVPMTKDSPVLSARGWEAVRPRDAVAQAPLL .:: :::::: ::.::::: :.:: :::.:.:: ::::.::.:: :.:::.:::: :::: gi|143 APQPLAPSDQCLLRQDTVETTATTLSTPGVLPMGKDSPLLSGRGCEVVRPKDAVAPAPLL 1140 1150 1160 1170 1180 1190 890 900 mKIAA1 RSRTLVKRVTWNLQEAEHSTPAALDRDP-------------------------------- ::::::::::::::::: :::: ::::: gi|143 RSRTLVKRVTWNLQEAEASTPA-LDRDPRTPLQRPQRPQEGDWDAEDRALIGFQQAPFSE 1200 1210 1220 1230 1240 1250 910 920 mKIAA1 -------------------------------------------AQVYSPNMPPPLAQPSS ::::::::::::::::: gi|143 LPPPIHVLQESGLPDADPSQPPGVPRAEGPPAVGTLHSAGGILAQVYSPNMPPPLAQPSS 1260 1270 1280 1290 1300 1310 930 940 950 960 970 980 mKIAA1 ILPYALVSQPSVQLILQGTLPLAGCGTAQSLAPVPTMPATVSELAVPTTNNSEERTATPK : :::::.::::::::::::::::::.::.::::::::::.::::::::::::::::::: gi|143 IPPYALVNQPSVQLILQGTLPLAGCGAAQNLAPVPTMPATASELAVPTTNNSEERTATPK 1320 1330 1340 1350 1360 1370 990 1000 1010 1020 1030 1040 mKIAA1 TAAEKTKKEEYMKKLHMQERAVEEVKLAIKPFYQKREVTKEEYKDILRKAVQKICHSKSG :::::: ::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|143 TAAEKTTKEEYMKKLHMQERAVEEVKLAIKPFYQKREVTKEEYKDILRKAVQKICHSKSG 1380 1390 1400 1410 1420 1430 1050 1060 1070 1080 mKIAA1 EINPVKVANLVKAYVDKYRHMRRHKKTEGGEEPPTQGAET ::::::::::::::::::::::.:::::.::::::::::: gi|143 EINPVKVANLVKAYVDKYRHMRKHKKTEAGEEPPTQGAET 1440 1450 1460 1470 >>gi|74216771|dbj|BAE37789.1| unnamed protein product [M (696 aa) initn: 3990 init1: 2857 opt: 2866 Z-score: 2376.7 bits: 450.9 E(): 1.1e-123 Smith-Waterman score: 3814; 86.925% identity (86.925% similar) in 696 aa overlap (480-1085:1-696) 450 460 470 480 490 500 mKIAA1 VTVEEPGVLPSPDAPQITTHRIVEFRASSRSRSTSSSRSRKKTKKKKKKVAREHQRTRSS :::::::::::::::::::::::::::::: gi|742 SRSTSSSRSRKKTKKKKKKVAREHQRTRSS 10 20 30 510 520 530 540 550 560 mKIAA1 TRSGSRDRTSRSVSPVAEEHTRRHRAKTKSRRSSSDRASSQDRAKRRKDRDDRDREHRRG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|742 TRSGSRDRTSRSVSPVAEEHTRRHRAKTKSRRSSSDRASSQDRAKRRKDRDDRDREHRRG 40 50 60 70 80 90 570 580 590 600 610 620 mKIAA1 SWGHGRCRRKSRSRSGSPGSSSCERHESKRRKRRHSGSRSRGSSLERDRRHKHRERSRER :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|742 SWGHGRCRRKSRSRSGSPGSSSCERHESKRRKRRHSGSRSRGSSLERDRRHKHRERSRER 100 110 120 130 140 150 630 640 650 660 670 680 mKIAA1 MDKQESVTRSRERRRWRSRSPSLEHRPRRPPSREKRAHSPEKKGPVREVSPAPATQGESR :::::::::::::: ::::::::::::::::::::::::::::::::::::::::::::: gi|742 MDKQESVTRSRERRTWRSRSPSLEHRPRRPPSREKRAHSPEKKGPVREVSPAPATQGESR 160 170 180 190 200 210 690 700 710 720 730 740 mKIAA1 QDGDHSAEPPVSEVSVLPEVVSVLPEVVVADLNPPEVPPVLAEPVAHVPEDLDYGESVEA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|742 QDGDHSAEPPVSEVSVLPEVVSVLPEVVVADLNPPEVPPVLAEPVAHVPEDLDYGESVEA 220 230 240 250 260 270 750 760 770 780 790 800 mKIAA1 GHVFEDFSNEAIFIQLDDMSSPPSPESTDSSPERDFPPNPILPPASLPQDSTLPTIQREV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|742 GHVFEDFSNEAIFIQLDDMSSPPSPESTDSSPERDFPPNPILPPASLPQDSTLPTIQREV 280 290 300 310 320 330 810 820 830 840 850 860 mKIAA1 LPIHSEDISKPVPQALAPSDQSLLKQDTVEITTTTPSTPAVVPMTKDSPVLSARGWEAVR :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|742 LPIHSEDISKPVPQALAPSDQSLLKQDTVEITTTTPSTPAVVPMTKDSPVLSARGWEAVR 340 350 360 370 380 390 870 880 890 900 mKIAA1 PRDAVAQAPLLRSRTLVKRVTWNLQEAEHSTPAALDRDP--------------------- ::::::::::::::::::::::::::::::::::::::: gi|742 PRDAVAQAPLLRSRTLVKRVTWNLQEAEHSTPAALDRDPRLTTRHPHSLSVGSSGTPLQR 400 410 420 430 440 450 mKIAA1 ------------------------------------------------------------ gi|742 PQRPQEGDWDAEDRALIGFQQAPFSELPPPIHVLQESGLPDADPSQPPGAPRAEGLPAAG 460 470 480 490 500 510 910 920 930 940 950 mKIAA1 ---------AQVYSPNMPPPLAQPSSILPYALVSQPSVQLILQGTLPLAGCGTAQSLAPV ::::::::::::::::::::::::::::::::::::::::::::::::::: gi|742 TLHSAGGILAQVYSPNMPPPLAQPSSILPYALVSQPSVQLILQGTLPLAGCGTAQSLAPV 520 530 540 550 560 570 960 970 980 990 1000 1010 mKIAA1 PTMPATVSELAVPTTNNSEERTATPKTAAEKTKKEEYMKKLHMQERAVEEVKLAIKPFYQ :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|742 PTMPATVSELAVPTTNNSEERTATPKTAAEKTKKEEYMKKLHMQERAVEEVKLAIKPFYQ 580 590 600 610 620 630 1020 1030 1040 1050 1060 1070 mKIAA1 KREVTKEEYKDILRKAVQKICHSKSGEINPVKVANLVKAYVDKYRHMRRHKKTEGGEEPP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|742 KREVTKEEYKDILRKAVQKICHSKSGEINPVKVANLVKAYVDKYRHMRRHKKTEGGEEPP 640 650 660 670 680 690 1080 mKIAA1 TQGAET :::::: gi|742 TQGAET >>gi|219519077|gb|AAI44295.1| PHRF1 protein [Homo sapien (1645 aa) initn: 2417 init1: 910 opt: 2585 Z-score: 2140.0 bits: 408.3 E(): 1.7e-110 Smith-Waterman score: 4173; 60.999% identity (76.687% similar) in 1141 aa overlap (17-1084:533-1644) 10 20 30 40 mKIAA1 TCYRRWEGLLSDFCFLAPVSLQRNSVTQSREESRLRDNPQPGALPS ::::.:::: . :: : .. :: :::: gi|219 GSILSGQSLLMLGSSDVIIHRDGSLSAKRAAPVSFQRNSGSLSRGEEGFKGCLQPRALPS 510 520 530 540 550 560 50 60 70 80 90 100 mKIAA1 ESASGGFVGDRQPNSGLSCGNRTALCCLPARIAQTPVRSDPSLTPRSGLSRTLSDENRPS : . : :.: ..:::: .:. ::: : .::: : .: . .:.::. . :. gi|219 GSPAQGPSGNRPQSTGLSCQGRSR---TPARTAGAPVRLDLPAAPGAVQARNLSNGSVPG 570 580 590 600 610 110 120 130 140 150 160 mKIAA1 RTHSSSPQLNGSN---VRVSSASTKIVTHSSFPS-KNTASGLPQRTGPRRPDFSKLPRIP .: :: .::.: . ..::..:: ...: : .... : : . .::: :.:.::::: gi|219 FRQSHSPWFNGTNKHTLPLASAASKISSRDSKPPCRSVVPGPPLKPAPRRTDISELPRIP 620 630 640 650 660 670 170 180 190 200 210 220 mKIAA1 KIHRDGNKSTQDQAPASGHIVELPSTCISRLTGREGPGQPGRG-RVDSEPSSRGPQETGS ::.:: . . .: ::: :. .:.::.:::::::::: :::::: :..:: ::: :.: : gi|219 KIRRDDGGGRRDAAPAHGQSIEIPSACISRLTGREGTGQPGRGTRAESEASSRVPREPGV 680 690 700 710 720 730 230 240 250 260 270 280 mKIAA1 HTSGSRPPAPSSHGSLAHLGPSRGKGIGSSFESFRINIPGNTAHCSQLSSPGFCNTFRPV ::..::::::::::::: ::::::::.::.::::::::::: :: ::::::::::::::: gi|219 HTGSSRPPAPSSHGSLAPLGPSRGKGVGSTFESFRINIPGNMAHSSQLSSPGFCNTFRPV 740 750 760 770 780 790 290 300 310 320 330 340 mKIAA1 DSKVQRKETPFPLFSIKKPKQLKSEIYDPFDPTGSDSSPPSSSPESLGPGLLPSEITRTI :.: ::::.: ::::::: :::.::.::: :::::::: :.:::: ::::::::::::: gi|219 DDKEQRKENPSPLFSIKKTKQLRSEVYDPSDPTGSDSSAPGSSPERSGPGLLPSEITRTI 800 810 820 830 840 850 350 360 370 380 390 400 mKIAA1 SINSPKAPAFQTVRCVTSYRVESIFGTEMEPEPQPPSEPVSGMLELLSKGSAEGTSDLEQ ::::::: . :.::::::: :::::::: :.:: : :.: .: . .:::.:: :. gi|219 SINSPKAQTVQAVRCVTSYTVESIFGTE----PEPPLGPSSAMSKLRGAVAAEGASDTER 860 870 880 890 900 910 410 420 430 440 450 460 mKIAA1 EGLGEIEPTEIRGSTARTQRPPPPDPWDDEDEVSCTPFFGSEERTVTCVTVEEPGVLPSP : :::: .: .:: .:: ::.:::.:: .::. :::::::::::::: :: . ::: gi|219 E-----EPTESQGLAARLRRPSPPEPWDEEDGASCSTFFGSEERTVTCVTVVEPEAPPSP 920 930 940 950 960 970 470 480 490 500 510 520 mKIAA1 DAPQITTHRIVEFRASSRSRSTSSSRSRKKTKKKKKKVAREHQRTRSSTRSGSRDRTSRS :. : .:::.::.: ::::::::::::::.:.: .:.::: ::::.::: ::::.::: gi|219 DVLQAATHRVVELRPPSRSRSTSSSRSRKKAKRK--RVSREHGRTRSGTRSESRDRSSRS 980 990 1000 1010 1020 530 540 550 560 570 580 mKIAA1 VSP-VAEEHTRRHRAKTKSRRSSSDRASSQDRAKRRKDRDDRDREHRRGSWGHGRCRRKS .:: :.::. ::.:.:.:::::::::.::..::::.: .: ..:::::: :::. :: : gi|219 ASPSVGEERPRRQRSKAKSRRSSSDRSSSRERAKRKKAKD-KSREHRRGPWGHS--RRTS 1030 1040 1050 1060 1070 1080 590 600 610 620 630 mKIAA1 RSRSGSPGSSSCERHESKRRKRRHSGSRSRG------SSLERDRRHKH-RERSRERMDKQ ::::::::::: :..::...:.:.:.:: :: ::::: :::: ::::.:: :.. gi|219 RSRSGSPGSSSYEHYESRKKKKRRSASRPRGRECSPTSSLERLCRHKHQRERSHERPDRK 1090 1100 1110 1120 1130 1140 640 650 660 670 680 mKIAA1 ESVTRSRERRRWRSRSPSLEHRPR---RPPSREK----RAHSPEKKGPVREVSPAPATQG :::. :.::. :::::: ::: : :: :::: :.::::.:: :::.:::: .:: gi|219 ESVAWPRDRRKRRSRSPSSEHRAREHRRPRSREKWPQTRSHSPERKGAVREASPAPLAQG 1150 1160 1170 1180 1190 1200 690 700 710 720 730 740 mKIAA1 ESRQDGDHSAEPPVSEVSVLPEVVSVLPEVVVADLNPPEVPPVLAEPVAHVPEDLD--YG : .. . : ..:. : :::.. :: : ..:::: . :.::: :: gi|219 EPGREDLPTRLPALGEAHVSPEVAT-------ADKAPLQAPPVLEVAAECEPDDLDLDYG 1210 1220 1230 1240 1250 750 760 770 780 790 800 mKIAA1 ESVEAGHVFEDFSNEAIFIQLDDMSSPPSPESTDSSPERDFPPNPILPPASLPQDSTLPT .::::::::.:::..:.::::::::::::::::::::::::: .: :::::: .. . gi|219 DSVEAGHVFDDFSSDAVFIQLDDMSSPPSPESTDSSPERDFPLKPALPPASL----AVAA 1260 1270 1280 1290 1300 1310 810 820 830 840 850 860 mKIAA1 IQREVLPIHSEDISKPVPQALAPSDQSLLKQDTVEITTTTPSTPAVVPMTK-DSPVLSAR ::::: .:.:: :.: : . .. ::. :..: . .::.: :.: : ::: :.: gi|219 IQREVSLMHDEDPSQPPPLPEGTQEPHLLRPDAAE-KAEAPSSPDVAPAGKEDSPSASGR 1320 1330 1340 1350 1360 1370 870 880 890 900 mKIAA1 GWEAVRPRDAVAQAPLLRSRTLVKRVTWNLQEAEHSTPA--------------------- ::.::...:.:.::::::.:::::::::::.: :.:: gi|219 VQEAARPEEVVSQTPLLRSRALVKRVTWNLQESESSAPAEDRAPRAPLHRPQKPREGAWD 1380 1390 1400 1410 1420 1430 910 920 930 mKIAA1 -----------AL----------------DRDPAQVYSPNMPPPLAQPSSILPYALVSQP :. : ::.:::::..:: :::::: : :::::: gi|219 MEDVAPTGVRQAFSELPFPSHVLPEPGFPDTDPSQVYSPGLPPAPAQPSSIPPCALVSQP 1440 1450 1460 1470 1480 1490 940 950 960 970 980 990 mKIAA1 SVQLILQGTLPLAGCGTAQSLAPVPTMPATVSELAVPTT--NNSEERTATPKTAAEKTKK .::.::::.:::.:::.::.:::::. . .:: : .: .::::.: .:. ::::::: gi|219 TVQFILQGSLPLVGCGAAQTLAPVPAALTPASEPASQATAASNSEEKTPAPRLAAEKTKK 1500 1510 1520 1530 1540 1550 1000 1010 1020 1030 1040 1050 mKIAA1 EEYMKKLHMQERAVEEVKLAIKPFYQKREVTKEEYKDILRKAVQKICHSKSGEINPVKVA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|219 EEYMKKLHMQERAVEEVKLAIKPFYQKREVTKEEYKDILRKAVQKICHSKSGEINPVKVA 1560 1570 1580 1590 1600 1610 1060 1070 1080 mKIAA1 NLVKAYVDKYRHMRRHKKTEGGEEPPTQGAET :::::::::::::::::: :.:::::::::: gi|219 NLVKAYVDKYRHMRRHKKPEAGEEPPTQGAEG 1620 1630 1640 >>gi|223459674|gb|AAI36616.1| PHD and ring finger domain (1649 aa) initn: 2417 init1: 910 opt: 2585 Z-score: 2140.0 bits: 408.3 E(): 1.7e-110 Smith-Waterman score: 4173; 60.999% identity (76.687% similar) in 1141 aa overlap (17-1084:537-1648) 10 20 30 40 mKIAA1 TCYRRWEGLLSDFCFLAPVSLQRNSVTQSREESRLRDNPQPGALPS ::::.:::: . :: : .. :: :::: gi|223 GSILSGQSLLMLGSSDVIIHRDGSLSAKRAAPVSFQRNSGSLSRGEEGFKGCLQPRALPS 510 520 530 540 550 560 50 60 70 80 90 100 mKIAA1 ESASGGFVGDRQPNSGLSCGNRTALCCLPARIAQTPVRSDPSLTPRSGLSRTLSDENRPS : . : :.: ..:::: .:. ::: : .::: : .: . .:.::. . :. gi|223 GSPAQGPSGNRPQSTGLSCQGRSR---TPARTAGAPVRLDLPAAPGAVQARNLSNGSVPG 570 580 590 600 610 620 110 120 130 140 150 160 mKIAA1 RTHSSSPQLNGSN---VRVSSASTKIVTHSSFPS-KNTASGLPQRTGPRRPDFSKLPRIP .: :: .::.: . ..::..:: ...: : .... : : . .::: :.:.::::: gi|223 FRQSHSPWFNGTNKHTLPLASAASKISSRDSKPPCRSVVPGPPLKPAPRRTDISELPRIP 630 640 650 660 670 680 170 180 190 200 210 220 mKIAA1 KIHRDGNKSTQDQAPASGHIVELPSTCISRLTGREGPGQPGRG-RVDSEPSSRGPQETGS ::.:: . . .: ::: :. .:.::.:::::::::: :::::: :..:: ::: :.: : gi|223 KIRRDDGGGRRDAAPAHGQSIEIPSACISRLTGREGTGQPGRGTRAESEASSRVPREPGV 690 700 710 720 730 740 230 240 250 260 270 280 mKIAA1 HTSGSRPPAPSSHGSLAHLGPSRGKGIGSSFESFRINIPGNTAHCSQLSSPGFCNTFRPV ::..::::::::::::: ::::::::.::.::::::::::: :: ::::::::::::::: gi|223 HTGSSRPPAPSSHGSLAPLGPSRGKGVGSTFESFRINIPGNMAHSSQLSSPGFCNTFRPV 750 760 770 780 790 800 290 300 310 320 330 340 mKIAA1 DSKVQRKETPFPLFSIKKPKQLKSEIYDPFDPTGSDSSPPSSSPESLGPGLLPSEITRTI :.: ::::.: ::::::: :::.::.::: :::::::: :.:::: ::::::::::::: gi|223 DDKEQRKENPSPLFSIKKTKQLRSEVYDPSDPTGSDSSAPGSSPERSGPGLLPSEITRTI 810 820 830 840 850 860 350 360 370 380 390 400 mKIAA1 SINSPKAPAFQTVRCVTSYRVESIFGTEMEPEPQPPSEPVSGMLELLSKGSAEGTSDLEQ ::::::: . :.::::::: :::::::: :.:: : :.: .: . .:::.:: :. gi|223 SINSPKAQTVQAVRCVTSYTVESIFGTE----PEPPLGPSSAMSKLRGAVAAEGASDTER 870 880 890 900 910 410 420 430 440 450 460 mKIAA1 EGLGEIEPTEIRGSTARTQRPPPPDPWDDEDEVSCTPFFGSEERTVTCVTVEEPGVLPSP : :::: .: .:: .:: ::.:::.:: .::. :::::::::::::: :: . ::: gi|223 E-----EPTESQGLAARLRRPSPPEPWDEEDGASCSTFFGSEERTVTCVTVVEPEAPPSP 920 930 940 950 960 970 470 480 490 500 510 520 mKIAA1 DAPQITTHRIVEFRASSRSRSTSSSRSRKKTKKKKKKVAREHQRTRSSTRSGSRDRTSRS :. : .:::.::.: ::::::::::::::.:.: .:.::: ::::.::: ::::.::: gi|223 DVLQAATHRVVELRPPSRSRSTSSSRSRKKAKRK--RVSREHGRTRSGTRSESRDRSSRS 980 990 1000 1010 1020 1030 530 540 550 560 570 580 mKIAA1 VSP-VAEEHTRRHRAKTKSRRSSSDRASSQDRAKRRKDRDDRDREHRRGSWGHGRCRRKS .:: :.::. ::.:.:.:::::::::.::..::::.: .: ..:::::: :::. :: : gi|223 ASPSVGEERPRRQRSKAKSRRSSSDRSSSRERAKRKKAKD-KSREHRRGPWGHS--RRTS 1040 1050 1060 1070 1080 590 600 610 620 630 mKIAA1 RSRSGSPGSSSCERHESKRRKRRHSGSRSRG------SSLERDRRHKH-RERSRERMDKQ ::::::::::: :..::...:.:.:.:: :: ::::: :::: ::::.:: :.. gi|223 RSRSGSPGSSSYEHYESRKKKKRRSASRPRGRECSPTSSLERLCRHKHQRERSHERPDRK 1090 1100 1110 1120 1130 1140 640 650 660 670 680 mKIAA1 ESVTRSRERRRWRSRSPSLEHRPR---RPPSREK----RAHSPEKKGPVREVSPAPATQG :::. :.::. :::::: ::: : :: :::: :.::::.:: :::.:::: .:: gi|223 ESVAWPRDRRKRRSRSPSSEHRAREHRRPRSREKWPQTRSHSPERKGAVREASPAPLAQG 1150 1160 1170 1180 1190 1200 690 700 710 720 730 740 mKIAA1 ESRQDGDHSAEPPVSEVSVLPEVVSVLPEVVVADLNPPEVPPVLAEPVAHVPEDLD--YG : .. . : ..:. : :::.. :: : ..:::: . :.::: :: gi|223 EPGREDLPTRLPALGEAHVSPEVAT-------ADKAPLQAPPVLEVAAECEPDDLDLDYG 1210 1220 1230 1240 1250 1260 750 760 770 780 790 800 mKIAA1 ESVEAGHVFEDFSNEAIFIQLDDMSSPPSPESTDSSPERDFPPNPILPPASLPQDSTLPT .::::::::.:::..:.::::::::::::::::::::::::: .: :::::: .. . gi|223 DSVEAGHVFDDFSSDAVFIQLDDMSSPPSPESTDSSPERDFPLKPALPPASL----AVAA 1270 1280 1290 1300 1310 810 820 830 840 850 860 mKIAA1 IQREVLPIHSEDISKPVPQALAPSDQSLLKQDTVEITTTTPSTPAVVPMTK-DSPVLSAR ::::: .:.:: :.: : . .. ::. :..: . .::.: :.: : ::: :.: gi|223 IQREVSLMHDEDPSQPPPLPEGTQEPHLLRPDAAE-KAEAPSSPDVAPAGKEDSPSASGR 1320 1330 1340 1350 1360 1370 870 880 890 900 mKIAA1 GWEAVRPRDAVAQAPLLRSRTLVKRVTWNLQEAEHSTPA--------------------- ::.::...:.:.::::::.:::::::::::.: :.:: gi|223 VQEAARPEEVVSQTPLLRSRALVKRVTWNLQESESSAPAEDRAPRAPLHRPQKPREGAWD 1380 1390 1400 1410 1420 1430 910 920 930 mKIAA1 -----------AL----------------DRDPAQVYSPNMPPPLAQPSSILPYALVSQP :. : ::.:::::..:: :::::: : :::::: gi|223 MEDVAPTGVRQAFSELPFPSHVLPEPGFPDTDPSQVYSPGLPPAPAQPSSIPPCALVSQP 1440 1450 1460 1470 1480 1490 940 950 960 970 980 990 mKIAA1 SVQLILQGTLPLAGCGTAQSLAPVPTMPATVSELAVPTT--NNSEERTATPKTAAEKTKK .::.::::.:::.:::.::.:::::. . .:: : .: .::::.: .:. ::::::: gi|223 TVQFILQGSLPLVGCGAAQTLAPVPAALTPASEPASQATAASNSEEKTPAPRLAAEKTKK 1500 1510 1520 1530 1540 1550 1000 1010 1020 1030 1040 1050 mKIAA1 EEYMKKLHMQERAVEEVKLAIKPFYQKREVTKEEYKDILRKAVQKICHSKSGEINPVKVA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|223 EEYMKKLHMQERAVEEVKLAIKPFYQKREVTKEEYKDILRKAVQKICHSKSGEINPVKVA 1560 1570 1580 1590 1600 1610 1060 1070 1080 mKIAA1 NLVKAYVDKYRHMRRHKKTEGGEEPPTQGAET :::::::::::::::::: :.:::::::::: gi|223 NLVKAYVDKYRHMRRHKKPEAGEEPPTQGAEG 1620 1630 1640 >>gi|219518215|gb|AAI44296.1| PHRF1 protein [Homo sapien (1647 aa) initn: 2417 init1: 910 opt: 2583 Z-score: 2138.3 bits: 408.0 E(): 2.1e-110 Smith-Waterman score: 4172; 60.911% identity (76.512% similar) in 1141 aa overlap (17-1084:535-1646) 10 20 30 40 mKIAA1 TCYRRWEGLLSDFCFLAPVSLQRNSVTQSREESRLRDNPQPGALPS ::::.:::: . :: : .. :: :::: gi|219 GSILSGQSLLMLGSSDVIIHRDGSLSAKRAAPVSFQRNSGSLSRGEEGFKGCLQPRALPS 510 520 530 540 550 560 50 60 70 80 90 100 mKIAA1 ESASGGFVGDRQPNSGLSCGNRTALCCLPARIAQTPVRSDPSLTPRSGLSRTLSDENRPS : . : :.: ..:::: .:. ::: : .::: : .: . .:.::. . :. gi|219 GSPAQGPSGNRPQSTGLSCQGRSR---TPARTAGAPVRLDLPAAPGAVQARNLSNGSVPG 570 580 590 600 610 620 110 120 130 140 150 160 mKIAA1 RTHSSSPQLNGSN---VRVSSASTKIVTHSSFPS-KNTASGLPQRTGPRRPDFSKLPRIP .: :: .::.: . ..::..:: ...: : .... : : . .::: :.:.::::: gi|219 FRQSHSPWFNGTNRHTLPLASAASKISSRDSKPPCRSVVPGPPLKPAPRRTDISELPRIP 630 640 650 660 670 680 170 180 190 200 210 220 mKIAA1 KIHRDGNKSTQDQAPASGHIVELPSTCISRLTGREGPGQPGRG-RVDSEPSSRGPQETGS ::.:: . . .: ::: :. .:.::.:::::::::: :::::: :..:: ::: :.: : gi|219 KIRRDDGGGRRDAAPAHGQSIEIPSACISRLTGREGTGQPGRGTRAESEASSRVPREPGV 690 700 710 720 730 740 230 240 250 260 270 280 mKIAA1 HTSGSRPPAPSSHGSLAHLGPSRGKGIGSSFESFRINIPGNTAHCSQLSSPGFCNTFRPV ::..::::::::::::: ::::::::.::.::::::::::: :: ::::::::::::::: gi|219 HTGSSRPPAPSSHGSLAPLGPSRGKGVGSTFESFRINIPGNMAHSSQLSSPGFCNTFRPV 750 760 770 780 790 800 290 300 310 320 330 340 mKIAA1 DSKVQRKETPFPLFSIKKPKQLKSEIYDPFDPTGSDSSPPSSSPESLGPGLLPSEITRTI :.: ::::.: ::::::: :::.::.::: :::::::: :.:::: ::::::::::::: gi|219 DDKEQRKENPSPLFSIKKTKQLRSEVYDPSDPTGSDSSAPGSSPERSGPGLLPSEITRTI 810 820 830 840 850 860 350 360 370 380 390 400 mKIAA1 SINSPKAPAFQTVRCVTSYRVESIFGTEMEPEPQPPSEPVSGMLELLSKGSAEGTSDLEQ ::::::: . :.::::::: :::::::: :.:: : :.: .: . .:::.:: :. gi|219 SINSPKAQTVQAVRCVTSYTVESIFGTE----PEPPLGPSSAMSKLRGAVAAEGASDTER 870 880 890 900 910 410 420 430 440 450 460 mKIAA1 EGLGEIEPTEIRGSTARTQRPPPPDPWDDEDEVSCTPFFGSEERTVTCVTVEEPGVLPSP : :::: .: .:: .:: ::.:::.:: .::. :::::::::::::: :: . ::: gi|219 E-----EPTESQGLAARLRRPSPPEPWDEEDGASCSTFFGSEERTVTCVTVVEPEAPPSP 920 930 940 950 960 970 470 480 490 500 510 520 mKIAA1 DAPQITTHRIVEFRASSRSRSTSSSRSRKKTKKKKKKVAREHQRTRSSTRSGSRDRTSRS :. : .:::.::.: ::::::::::::::.:.: .:.::: ::::.::: ::::.::: gi|219 DVLQAATHRVVELRPPSRSRSTSSSRSRKKAKRK--RVSREHGRTRSGTRSESRDRSSRS 980 990 1000 1010 1020 1030 530 540 550 560 570 580 mKIAA1 VSP-VAEEHTRRHRAKTKSRRSSSDRASSQDRAKRRKDRDDRDREHRRGSWGHGRCRRKS .:: :.::. ::.:.:.:::::::::.::..::::.: .: ..:::::: :::. :: : gi|219 ASPSVGEERPRRQRSKAKSRRSSSDRSSSRERAKRKKAKD-KSREHRRGPWGHS--RRTS 1040 1050 1060 1070 1080 590 600 610 620 630 mKIAA1 RSRSGSPGSSSCERHESKRRKRRHSGSRSRG------SSLERDRRHKH-RERSRERMDKQ ::::::::::: :..::...:.:.:.:: :: ::::: :::: ::::.:: :.. gi|219 RSRSGSPGSSSYEHYESRKKKKRRSASRPRGRECSPTSSLERLCRHKHQRERSHERPDRK 1090 1100 1110 1120 1130 1140 640 650 660 670 680 mKIAA1 ESVTRSRERRRWRSRSPSLEHRPR---RPPSREK----RAHSPEKKGPVREVSPAPATQG :::. :.::. :::::: ::: : :: :::: :.::::.:: :::.:::: .:: gi|219 ESVAWPRDRRKRRSRSPSSEHRAREHRRPRSREKWPQTRSHSPERKGAVREASPAPLAQG 1150 1160 1170 1180 1190 1200 690 700 710 720 730 740 mKIAA1 ESRQDGDHSAEPPVSEVSVLPEVVSVLPEVVVADLNPPEVPPVLAEPVAHVPEDLD--YG : .. . : ..:. : :::.. :: : ..:::: . :.::: :: gi|219 EPGREDLPTRLPALGEAHVSPEVAT-------ADKAPLQAPPVLEVAAECEPDDLDLDYG 1210 1220 1230 1240 1250 1260 750 760 770 780 790 800 mKIAA1 ESVEAGHVFEDFSNEAIFIQLDDMSSPPSPESTDSSPERDFPPNPILPPASLPQDSTLPT .::::::::.:::..:.::::::::::::::::::::::::: .: :::::: .. . gi|219 DSVEAGHVFDDFSSDAVFIQLDDMSSPPSPESTDSSPERDFPLKPALPPASL----AVAA 1270 1280 1290 1300 1310 810 820 830 840 850 860 mKIAA1 IQREVLPIHSEDISKPVPQALAPSDQSLLKQDTVEITTTTPSTPAVVPMTK-DSPVLSAR ::::: .:.:: :.: : . .. ::. :..: . .::.: :.: : ::: :.: gi|219 IQREVSLMHDEDPSQPPPLPEGTQEPHLLRPDAAE-KAEAPSSPDVAPAGKEDSPSASGR 1320 1330 1340 1350 1360 1370 870 880 890 900 mKIAA1 GWEAVRPRDAVAQAPLLRSRTLVKRVTWNLQEAEHSTPAAL------------------- ::.::...:.:.::::::.:::::::::::.: :.:: gi|219 VQEAARPEEVVSQTPLLRSRALVKRVTWNLQESESSAPAEDRAPRAPLHRPQKPREGAWD 1380 1390 1400 1410 1420 1430 910 920 930 mKIAA1 -----------------------------DRDPAQVYSPNMPPPLAQPSSILPYALVSQP : ::.:::::..:: :::::: : :::::: gi|219 MEDVAPTGVRQVFSELPFPSHVLPEPGFPDTDPSQVYSPGLPPAPAQPSSIPPCALVSQP 1440 1450 1460 1470 1480 1490 940 950 960 970 980 990 mKIAA1 SVQLILQGTLPLAGCGTAQSLAPVPTMPATVSELAVPTT--NNSEERTATPKTAAEKTKK .::.::::.:::.:::.::.:::::. . .:: : .: .::::.: .:. ::::::: gi|219 TVQFILQGSLPLVGCGAAQTLAPVPAALTPASEPASQATAASNSEEKTPAPRLAAEKTKK 1500 1510 1520 1530 1540 1550 1000 1010 1020 1030 1040 1050 mKIAA1 EEYMKKLHMQERAVEEVKLAIKPFYQKREVTKEEYKDILRKAVQKICHSKSGEINPVKVA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|219 EEYMKKLHMQERAVEEVKLAIKPFYQKREVTKEEYKDILRKAVQKICHSKSGEINPVKVA 1560 1570 1580 1590 1600 1610 1060 1070 1080 mKIAA1 NLVKAYVDKYRHMRRHKKTEGGEEPPTQGAET :::::::::::::::::: :.:::::::::: gi|219 NLVKAYVDKYRHMRRHKKPEAGEEPPTQGAEG 1620 1630 1640 1085 residues in 1 query sequences 2727779818 residues in 7921681 library sequences Tcomplib [34.26] (2 proc) start: Sat Mar 14 18:56:17 2009 done: Sat Mar 14 19:05:40 2009 Total Scan time: 1220.710 Total Display time: 0.750 Function used was FASTA [version 34.26.5 April 26, 2007]