# /usr/local/bin/fasta34_t -T 4 -b50 -d10 -E0.01 -H -O./tmp/mpg00579.fasta.nr -Q ../query/mKIAA1328.ptfa /cdna4/rodent/rouge_util/new.rouge/nfasta/nr 2 FASTA searches a protein or DNA sequence data bank version 34.26.5 April 26, 2007 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 mKIAA1328, 223 aa vs /cdna4/rodent/rouge_util/new.rouge/nfasta/nr library 2727779818 residues in 7921681 sequences statistics sampled from 60000 to 7920031 sequences Expectation_n fit: rho(ln(x))= 5.3033+/-0.000187; mu= 7.7971+/- 0.010 mean_var=81.9182+/-15.576, 0's: 44 Z-trim: 46 B-trim: 0 in 0/66 Lambda= 0.141705 FASTA (3.5 Sept 2006) function [optimized, BL50 matrix (15:-5)] ktup: 2 join: 36, opt: 24, open/ext: -10/-2, width: 16 The best scores are: opt bits E(7921681) gi|41946968|gb|AAH66089.1| AW554918 protein [Mus m ( 454) 1524 320.8 2.2e-85 gi|109506383|ref|XP_574113.2| PREDICTED: hypotheti ( 420) 1007 215.1 1.3e-53 gi|109507055|ref|XP_001056988.1| PREDICTED: hypoth ( 564) 1007 215.2 1.7e-53 gi|158258008|dbj|BAF84977.1| unnamed protein produ ( 577) 741 160.8 4e-37 gi|114672890|ref|XP_001139184.1| PREDICTED: hypoth ( 579) 716 155.7 1.4e-35 gi|13874541|dbj|BAB46887.1| hypothetical protein [ ( 514) 711 154.6 2.6e-35 gi|109121993|ref|XP_001106820.1| PREDICTED: hypoth ( 579) 711 154.7 2.8e-35 gi|73961725|ref|XP_537278.2| PREDICTED: hypothetic ( 615) 659 144.1 4.7e-32 gi|194385444|dbj|BAG65099.1| unnamed protein produ ( 450) 593 130.5 4.2e-28 gi|126320818|ref|XP_001367405.1| PREDICTED: hypoth ( 181) 320 74.3 1.4e-11 gi|187469161|gb|AAI66863.1| RGD1564140 protein [Ra ( 147) 307 71.6 7.3e-11 gi|224090109|ref|XP_002189139.1| PREDICTED: hypoth ( 633) 266 63.7 7.3e-08 gi|149409874|ref|XP_001506846.1| PREDICTED: simila ( 433) 221 54.4 3.2e-05 gi|60098691|emb|CAH65176.1| hypothetical protein [ ( 549) 208 51.8 0.00024 gi|170285152|gb|AAI61369.1| LOC100145612 protein [ ( 554) 203 50.8 0.0005 gi|134026316|gb|AAI34968.1| Zgc:162344 protein [Da ( 580) 191 48.4 0.0028 gi|115528132|gb|AAI24720.1| Zgc:162344 protein [Da ( 586) 189 48.0 0.0038 >>gi|41946968|gb|AAH66089.1| AW554918 protein [Mus muscu (454 aa) initn: 1524 init1: 1524 opt: 1524 Z-score: 1689.4 bits: 320.8 E(): 2.2e-85 Smith-Waterman score: 1524; 100.000% identity (100.000% similar) in 223 aa overlap (1-223:232-454) 10 20 30 mKIAA1 HLLAQQETKLLLKQQQLHQSRLDYNWLRTQ :::::::::::::::::::::::::::::: gi|419 TDIEKQLSEDRRQQLMLQKMELEIEKERLQHLLAQQETKLLLKQQQLHQSRLDYNWLRTQ 210 220 230 240 250 260 40 50 60 70 80 90 mKIAA1 AMFKSRELVADKEFPKPDLDMNGSVSGPSLWKPKCDGWMRGTSTSFKKCPDSPNSGQNQR :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|419 AMFKSRELVADKEFPKPDLDMNGSVSGPSLWKPKCDGWMRGTSTSFKKCPDSPNSGQNQR 270 280 290 300 310 320 100 110 120 130 140 150 mKIAA1 EKKTVEFQSRVENGIQWTCQQNDICRPQRETVTGVRKDASTSPMSTRSPKEPLTPASLSS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|419 EKKTVEFQSRVENGIQWTCQQNDICRPQRETVTGVRKDASTSPMSTRSPKEPLTPASLSS 330 340 350 360 370 380 160 170 180 190 200 210 mKIAA1 QHKTSRYETSLLDLVQSLSPNSAPKSQPHPSRAAGTWSTLRPTPQKSIWKKVGTRRSPED :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|419 QHKTSRYETSLLDLVQSLSPNSAPKSQPHPSRAAGTWSTLRPTPQKSIWKKVGTRRSPED 390 400 410 420 430 440 220 mKIAA1 LEENQILEDIFFI ::::::::::::: gi|419 LEENQILEDIFFI 450 >>gi|109506383|ref|XP_574113.2| PREDICTED: hypothetical (420 aa) initn: 1121 init1: 984 opt: 1007 Z-score: 1118.6 bits: 215.1 E(): 1.3e-53 Smith-Waterman score: 1058; 74.439% identity (81.166% similar) in 223 aa overlap (1-223:231-420) 10 20 30 mKIAA1 HLLAQQETKLLLKQQQLHQSRLDYNWLRTQ .:::::::::::::::::::::::: gi|109 TDIEKQLSEDRRQQLMLQKMELEIEKERLQQLLAQQETKLLLKQQQLHQSRLDYN----- 210 220 230 240 250 40 50 60 70 80 90 mKIAA1 AMFKSRELVADKEFPKPDLDMNGSVSGPSLWKPKCDGWMRGTSTSFKKCPDSPNSGQNQR : :::::::.::::.::.::::::::.:::. gi|109 ----------------------------CLLKPKCDGWLRGTSSSFRKCPDSPNSAQNQK 260 270 280 100 110 120 130 140 150 mKIAA1 EKKTVEFQSRVENGIQWTCQQNDICRPQRETVTGVRKDASTSPMSTRSPKEPLTPASLSS :::::::::.::::::::::::: :: ::::.::::::::::::::.:::.:::::: :: gi|109 EKKTVEFQSHVENGIQWTCQQNDTCRLQRETATGVRKDASTSPMSTQSPKHPLTPASSSS 290 300 310 320 330 340 160 170 180 190 200 210 mKIAA1 QHKTSRYETSLLDLVQSLSPNSAPKSQPHPSRAAGTWSTLRPTPQKSIWKKVGTRRSPED .:::::::::::::::::::::::: ::: ::::::::.:::::. : ::::::..:::: gi|109 KHKTSRYETSLLDLVQSLSPNSAPKCQPHSSRAAGTWSALRPTPKTSTWKKVGTHKSPED 350 360 370 380 390 400 220 mKIAA1 LEENQILEDIFFI ::::::::::::: gi|109 LEENQILEDIFFI 410 420 >>gi|109507055|ref|XP_001056988.1| PREDICTED: hypothetic (564 aa) initn: 1121 init1: 984 opt: 1007 Z-score: 1116.9 bits: 215.2 E(): 1.7e-53 Smith-Waterman score: 1058; 74.439% identity (81.166% similar) in 223 aa overlap (1-223:375-564) 10 20 30 mKIAA1 HLLAQQETKLLLKQQQLHQSRLDYNWLRTQ .:::::::::::::::::::::::: gi|109 TDIEKQLSEDRRQQLMLQKMELEIEKERLQQLLAQQETKLLLKQQQLHQSRLDYN----- 350 360 370 380 390 40 50 60 70 80 90 mKIAA1 AMFKSRELVADKEFPKPDLDMNGSVSGPSLWKPKCDGWMRGTSTSFKKCPDSPNSGQNQR : :::::::.::::.::.::::::::.:::. gi|109 ----------------------------CLLKPKCDGWLRGTSSSFRKCPDSPNSAQNQK 400 410 420 430 100 110 120 130 140 150 mKIAA1 EKKTVEFQSRVENGIQWTCQQNDICRPQRETVTGVRKDASTSPMSTRSPKEPLTPASLSS :::::::::.::::::::::::: :: ::::.::::::::::::::.:::.:::::: :: gi|109 EKKTVEFQSHVENGIQWTCQQNDTCRLQRETATGVRKDASTSPMSTQSPKHPLTPASSSS 440 450 460 470 480 490 160 170 180 190 200 210 mKIAA1 QHKTSRYETSLLDLVQSLSPNSAPKSQPHPSRAAGTWSTLRPTPQKSIWKKVGTRRSPED .:::::::::::::::::::::::: ::: ::::::::.:::::. : ::::::..:::: gi|109 KHKTSRYETSLLDLVQSLSPNSAPKCQPHSSRAAGTWSALRPTPKTSTWKKVGTHKSPED 500 510 520 530 540 550 220 mKIAA1 LEENQILEDIFFI ::::::::::::: gi|109 LEENQILEDIFFI 560 >>gi|158258008|dbj|BAF84977.1| unnamed protein product [ (577 aa) initn: 855 init1: 569 opt: 741 Z-score: 822.8 bits: 160.8 E(): 4e-37 Smith-Waterman score: 800; 60.000% identity (72.000% similar) in 225 aa overlap (1-223:386-577) 10 20 30 mKIAA1 HLLAQQETKLLLKQQQLHQSRLDYNWLRTQ ::::::::::::::::::::::::: gi|158 ETLKKQISEDRKQQLMLQKMELEIEKERLQHLLAQQETKLLLKQQQLHQSRLDYN----- 360 370 380 390 400 410 40 50 60 70 80 90 mKIAA1 AMFKSRELVADKEFPKPDLDMNGSVSGPSLWKPKCDGWMRGTSTSFKKCPDSPNSGQNQR : : .::::. :::.:.:: : ::::.:.. gi|158 ----------------------------CLLKSNCDGWLLGTSSSIKKHQDPPNSGENRK 420 430 440 100 110 120 130 140 150 mKIAA1 EKKTVEFQSRVENGIQWTCQQNDICRPQRETVTGVRKDASTSPMSTRSPKEPLTPASLSS :.::: :.:.... ::.::..: ::::: :::::::::::::: : : :. .: :: : gi|158 ERKTVGFHSHMKDDAQWSCQKKDTCRPQRGTVTGVRKDASTSPMPTGSLKDFVTTASPSL 450 460 470 480 490 500 160 170 180 190 200 mKIAA1 QHKTSRYETSLLDLVQSLSPNSAPKSQPHPSRAAGTWS--TLRPTPQKSIWKKVGTRRSP :: :::::::::::::::::::::: : .::: ::.:. :.: .: :: ::.: .:.: gi|158 QHTTSRYETSLLDLVQSLSPNSAPKPQRYPSREAGAWNHGTFRLSPLKSTRKKMGMHRTP 510 520 530 540 550 560 210 220 mKIAA1 EDLEENQILEDIFFI :.::::::::::::: gi|158 EELEENQILEDIFFI 570 >>gi|114672890|ref|XP_001139184.1| PREDICTED: hypothetic (579 aa) initn: 830 init1: 544 opt: 716 Z-score: 795.2 bits: 155.7 E(): 1.4e-35 Smith-Waterman score: 775; 59.111% identity (71.111% similar) in 225 aa overlap (1-223:388-579) 10 20 30 mKIAA1 HLLAQQETKLLLKQQQLHQSRLDYNWLRTQ ::::::::::::::::::::::::: gi|114 ETLKKQISEDRKQQLMLQKMELEIEKERLQHLLAQQETKLLLKQQQLHQSRLDYN----- 360 370 380 390 400 410 40 50 60 70 80 90 mKIAA1 AMFKSRELVADKEFPKPDLDMNGSVSGPSLWKPKCDGWMRGTSTSFKKCPDSPNSGQNQR : : .::::. :::.:.:: : : ::.:.. gi|114 ----------------------------CLLKSNCDGWLLGTSSSIKKHQDPPYSGENRK 420 430 440 100 110 120 130 140 150 mKIAA1 EKKTVEFQSRVENGIQWTCQQNDICRPQRETVTGVRKDASTSPMSTRSPKEPLTPASLSS :.::: :.:.... ::.::..: :::: :::::::::::::: : : :. .: :: : gi|114 ERKTVGFHSHMKDDAQWSCQKKDTYRPQRGTVTGVRKDASTSPMPTGSLKDFVTTASPSL 450 460 470 480 490 500 160 170 180 190 200 mKIAA1 QHKTSRYETSLLDLVQSLSPNSAPKSQPHPSRAAGTWS--TLRPTPQKSIWKKVGTRRSP :: :::::::::::::::::::::: : .::: ::.:. :.: .: :: ::.: .:.: gi|114 QHTTSRYETSLLDLVQSLSPNSAPKPQRYPSREAGAWNHGTFRLSPLKSTRKKMGMHRTP 510 520 530 540 550 560 210 220 mKIAA1 EDLEENQILEDIFFI :.::::::::::::: gi|114 EELEENQILEDIFFI 570 >>gi|13874541|dbj|BAB46887.1| hypothetical protein [Maca (514 aa) initn: 825 init1: 540 opt: 711 Z-score: 790.4 bits: 154.6 E(): 2.6e-35 Smith-Waterman score: 770; 59.111% identity (71.111% similar) in 225 aa overlap (1-223:323-514) 10 20 30 mKIAA1 HLLAQQETKLLLKQQQLHQSRLDYNWLRTQ ::::::::::::::::::::::::: gi|138 ETLKKQISEDRKQQLMLQKMELEIEKERLQHLLAQQETKLLLKQQQLHQSRLDYN----- 300 310 320 330 340 40 50 60 70 80 90 mKIAA1 AMFKSRELVADKEFPKPDLDMNGSVSGPSLWKPKCDGWMRGTSTSFKKCPDSPNSGQNQR : : .::::. :::.: :: ..::::.:.. gi|138 ----------------------------CLLKSNCDGWLLGTSSSVKKYQETPNSGENRK 350 360 370 100 110 120 130 140 150 mKIAA1 EKKTVEFQSRVENGIQWTCQQNDICRPQRETVTGVRKDASTSPMSTRSPKEPLTPASLSS ::::: :.:.... ::.::..: :::: :.:::::::::::: : : :. .: :: : gi|138 EKKTVGFHSHMKDDAQWSCQKKDTYRPQRGTMTGVRKDASTSPMPTGSLKDFVTTASPSL 380 390 400 410 420 430 160 170 180 190 200 mKIAA1 QHKTSRYETSLLDLVQSLSPNSAPKSQPHPSRAAGTWS--TLRPTPQKSIWKKVGTRRSP :: :::::::::::::::::::: ::: ::: ::::. :.. . :: :::.: .:.: gi|138 QHTTSRYETSLLDLVQSLSPNSALKSQRCPSREAGTWNHGTFQLSLPKSTWKKMGMHRTP 440 450 460 470 480 490 210 220 mKIAA1 EDLEENQILEDIFFI :.::::::::::::: gi|138 EELEENQILEDIFFI 500 510 >>gi|109121993|ref|XP_001106820.1| PREDICTED: hypothetic (579 aa) initn: 825 init1: 540 opt: 711 Z-score: 789.7 bits: 154.7 E(): 2.8e-35 Smith-Waterman score: 770; 59.111% identity (71.111% similar) in 225 aa overlap (1-223:388-579) 10 20 30 mKIAA1 HLLAQQETKLLLKQQQLHQSRLDYNWLRTQ ::::::::::::::::::::::::: gi|109 ETLKKQISEDRKQQLMLQKMELEIEKERLQHLLAQQETKLLLKQQQLHQSRLDYN----- 360 370 380 390 400 410 40 50 60 70 80 90 mKIAA1 AMFKSRELVADKEFPKPDLDMNGSVSGPSLWKPKCDGWMRGTSTSFKKCPDSPNSGQNQR : : .::::. :::.: :: ..::::.:.. gi|109 ----------------------------CLLKSNCDGWLLGTSSSVKKYQETPNSGENRK 420 430 440 100 110 120 130 140 150 mKIAA1 EKKTVEFQSRVENGIQWTCQQNDICRPQRETVTGVRKDASTSPMSTRSPKEPLTPASLSS ::::: :.:.... ::.::..: :::: :.:::::::::::: : : :. .: :: : gi|109 EKKTVGFHSHMKDDAQWSCQKKDTYRPQRGTMTGVRKDASTSPMPTGSLKDFVTTASPSL 450 460 470 480 490 500 160 170 180 190 200 mKIAA1 QHKTSRYETSLLDLVQSLSPNSAPKSQPHPSRAAGTWS--TLRPTPQKSIWKKVGTRRSP :: :::::::::::::::::::: ::: ::: ::::. :.. . :: :::.: .:.: gi|109 QHTTSRYETSLLDLVQSLSPNSALKSQRCPSREAGTWNHGTFQLSLPKSTWKKMGMHRTP 510 520 530 540 550 560 210 220 mKIAA1 EDLEENQILEDIFFI :.::::::::::::: gi|109 EELEENQILEDIFFI 570 >>gi|73961725|ref|XP_537278.2| PREDICTED: hypothetical p (615 aa) initn: 779 init1: 340 opt: 659 Z-score: 731.9 bits: 144.1 E(): 4.7e-32 Smith-Waterman score: 713; 55.507% identity (68.282% similar) in 227 aa overlap (1-223:422-615) 10 20 30 mKIAA1 HLLAQQETKLLLKQQQLHQSRLDYNWLRTQ :::.::::::::::::::::::::. gi|739 TDIKKQLSENRRQQLMLQKMELEIEKERLQHLLTQQETKLLLKQQQLHQSRLDYD----- 400 410 420 430 440 40 50 60 70 80 90 mKIAA1 AMFKSRELVADKEFPKPDLDMNGSVSGPSLWKPKCDGWMRGTSTSFKKCPDSPNSGQNQR : : :::::. : :.:.:: .: .: .:.: gi|739 ----------------------------CLLKSKCDGWLLGPSSSIKKYQESTSSVENRR 450 460 470 100 110 120 130 140 mKIAA1 EKKTVEFQSRVENGIQ--WTCQQNDICRPQRETVTGVRKDASTSPMSTRSPKEPLTPASL ::::: :: ..:. . ::::..: .: : : .:::::::::::. : :: .. gi|739 EKKTVGFQPHTEDDTDMIWTCQKKDTYQPLRGTGAGVRKDASTSPMTKGSQKELAITTTS 480 490 500 510 520 530 150 160 170 180 190 200 mKIAA1 SSQHKTSRYETSLLDLVQSLSPNSAPKSQPHPSRAAGTW--STLRPTPQKSIWKKVGTRR . : :::::::::::::::::.:::: :::::: ::.: :: : .:.:: :.:.:. : gi|739 ALQLDTSRYETSLLDLVQSLSPKSAPKPQPHPSREAGAWNHSTRRLSPRKSTWNKMGAGR 540 550 560 570 580 590 210 220 mKIAA1 SPEDLEENQILEDIFFI .:::::::::::::::: gi|739 TPEDLEENQILEDIFFI 600 610 >>gi|194385444|dbj|BAG65099.1| unnamed protein product [ (450 aa) initn: 707 init1: 561 opt: 593 Z-score: 660.8 bits: 130.5 E(): 4.2e-28 Smith-Waterman score: 652; 57.979% identity (70.213% similar) in 188 aa overlap (1-188:278-432) 10 20 30 mKIAA1 HLLAQQETKLLLKQQQLHQSRLDYNWLRTQ ::::::::::::::::::::::::: gi|194 ETLKKQISEDRKQQLMLQKMELEIEKERLQHLLAQQETKLLLKQQQLHQSRLDYN----- 250 260 270 280 290 300 40 50 60 70 80 90 mKIAA1 AMFKSRELVADKEFPKPDLDMNGSVSGPSLWKPKCDGWMRGTSTSFKKCPDSPNSGQNQR : : .::::. :::.:.:: : ::::.:.. gi|194 ----------------------------CLLKSNCDGWLLGTSSSIKKHQDPPNSGENRK 310 320 330 100 110 120 130 140 150 mKIAA1 EKKTVEFQSRVENGIQWTCQQNDICRPQRETVTGVRKDASTSPMSTRSPKEPLTPASLSS :.::: :.:.... ::.::..: ::::: :::::::::::::: . : :. .: :: : gi|194 ERKTVGFHSHMKDDAQWSCQKKDTCRPQRGTVTGVRKDASTSPMPSGSLKDFVTTASPSL 340 350 360 370 380 390 160 170 180 190 200 210 mKIAA1 QHKTSRYETSLLDLVQSLSPNSAPKSQPHPSRAAGTWSTLRPTPQKSIWKKVGTRRSPED :: :::::.:::::::::::::::: : .::: ::.:. gi|194 QHTTSRYEASLLDLVQSLSPNSAPKPQRYPSREAGAWNHVNLQEVSSPSRRGGLHL 400 410 420 430 440 450 220 mKIAA1 LEENQILEDIFFI >>gi|126320818|ref|XP_001367405.1| PREDICTED: hypothetic (181 aa) initn: 326 init1: 241 opt: 320 Z-score: 364.5 bits: 74.3 E(): 1.4e-11 Smith-Waterman score: 320; 38.372% identity (62.791% similar) in 172 aa overlap (56-223:12-181) 30 40 50 60 70 80 mKIAA1 WLRTQAMFKSRELVADKEFPKPDLDMNGSVSGPSLWKPKCDGWMRGTSTSFK--KCPDSP : : . . : : ... : : : : .. gi|126 MEMQSVTATCSSLPIFLQSKPDDYLHRTPTPSKGIKLHSTT 10 20 30 40 90 100 110 120 130 140 mKIAA1 NSGQNQREKKTVEFQSRVENGIQWTCQQNDICRPQRETVTGVRKDASTSPMSTRSPKEPL . : :. :: . :.: :.. : . :: : .: .. .::::.:::. . :. . gi|126 EEG-NSIGKKPIGFRSNVKEDDLWMYRPNDTNRSRRGEMSRARKDATTSPIMPVTRKDFV 50 60 70 80 90 100 150 160 170 180 190 200 mKIAA1 TPASLSSQHKTSRYETSLLDLVQSLSPNSAPKSQPHPSRAAGTW--STLRPTPQKSIWKK : :. : :.::.:::::::.:::: :: . .: :: : .: : .. :.: : . gi|126 TTATSPFQCDTARYNTSLLDLVHSLSPRSASRPRPPLSREAYAWNHSPVQVFPRKLAWAS 110 120 130 140 150 160 210 220 mKIAA1 VGTRRSPEDLEENQILEDIFFI .. . :.:::...::.:::: gi|126 RASGQC-EELEESRMLEEIFFI 170 180 223 residues in 1 query sequences 2727779818 residues in 7921681 library sequences Tcomplib [34.26] (2 proc) start: Fri Mar 13 18:32:43 2009 done: Fri Mar 13 18:37:37 2009 Total Scan time: 695.670 Total Display time: 0.040 Function used was FASTA [version 34.26.5 April 26, 2007]