FASTA searches a protein or DNA sequence data bank version 3.4t11 Apr 17, 2002 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 ../query/mKIAA0170.ptfa, 1015 aa vs ./tmplib.26680 library 1768002 residues in 2168 sequences Expectation_n fit: rho(ln(x))= 12.9307+/-0.00927; mu= -20.9395+/- 0.610 mean_var=569.4734+/-138.618, 0's: 0 Z-trim: 11 B-trim: 0 in 0/36 Lambda= 0.0537 FASTA (3.45 Mar 2002) function [optimized, BL50 matrix (15:-5)] ktup: 2 join: 39, opt: 27, open/ext: -10/-2, width: 16 The best scores are: opt bits E(2168) mKIAA0324 ( 1754 res) mbg00352 (1754) 308 40 0.0046 >>mKIAA0324 ( 1754 res) mbg00352 (1754 aa) initn: 216 init1: 86 opt: 308 Z-score: 147.4 bits: 39.6 E(): 0.0046 Smith-Waterman score: 389; 23.926% identity (27.838% ungapped) in 861 aa overlap (4-812:272-1063) 10 20 mKIAA0 LSLQTPGADTLDVPWEVLATQPFCL----REQS . ::.. . : :: .: : . :: mKIAA0 PNSSQDELMEVEKSEQPLSQVLPSLSPEHKEMPGSNIESSP-EV-EERPAVLSALDQSQS 250 260 270 280 290 30 40 50 60 70 80 mKIAA0 ETSELHE--AHGSQPSLPREPPGHQHLVHTSPVHTELLRIEGREIQTVEKAMGIPKEMAD . :. : : .: : :. : :..: :. : : .. : . : : .:. mKIAA0 QPSKAAETPAVASCWSGPQVSPEHKELSHSPP------RENSFESSLEFKNSGPVSEVNT 300 310 320 330 340 350 90 100 110 120 130 140 mKIAA0 RMTPEREPLEREIRGRTEN-SERDVIGEELIQGTKDREPKKVLARDSQRKEADKDLEGNR ..:: ...:. : : .: : . :. ..:. .. :. . .: . . ... mKIAA0 GFSPE---VKEELNGSFLNQTEADPSVDMKEQSRSSRRSSSELSPEVVEKVGL--FSSQK 360 370 380 390 400 150 160 170 180 190 200 mKIAA0 ESLEVEIEMSKDSQKRERKVE-KPEPKREWEPADLEVTPDRGVTEEGSHDQKGQIASLTL : : ... . .:::. .:: : : ::.: .. :: mKIAA0 VSSPVLETVQQRTPSRERSSSASPELKD-----GLPRTPSRR-SRSGS------------ 410 420 430 440 450 210 220 230 240 250 260 mKIAA0 KPGVGVKDLEGLASAPIITGSQADGGKGDPLSPGRQQRGRLSCQTTPAGKASRGDPEPPD .::. .: : : ..:: . : : : .:.: :: :...: :: :. . mKIAA0 SPGL--RDGSGTPSRHSLSGS-SPGMKDTPQTPSR---GRSECDSSPEPKALPQTPRARS 460 470 480 490 500 270 280 290 300 310 320 mKIAA0 HCLFSSVPEASTQSLLTSQSQKQSTPQPLFSTSSSEIPLPESLHTKPNVRPRRSSRMTPS : : :: ...:. ::: : : : . . .:.:. : : .: . . mKIAA0 HS--PSSPERNNKSV---------TPQRERSGSESSVEQKNLARTSPGQRSRSGSSQELD 510 520 530 540 550 330 340 350 360 370 380 mKIAA0 PHSSAALKPNTTCPTNQPAASRPTSR-PTRGRANRSSTRTPELIVPVDPELQPS-TSTEQ . ::. :. ... :.: .: : : :.. .:. . .:.:. : .: :. mKIAA0 GKPSAS--PQERSESDSSPDSKPKTRTPLRQRSHSGSSPEVDSKSRHSPRLSRSGSSPEM 560 570 580 590 600 610 390 400 410 420 430 440 mKIAA0 PVIPKLTSQVTEGRVQMPEPLLTGPEIQSPTSTEQSVTPDRKPRATRGRPSKS-PNKTPE :.. ... : . :: . .:. : : . .: : . :.: :...:. mKIAA0 KDKPRVLQRAQSGTDSSPEHKIPAPRALPRHSRSGSSSKERGPSPEGSSSSESSPEHAPK 620 630 640 650 660 670 450 460 470 480 490 mKIAA0 PLIS---TGPELQPPTSIEQPVIPKPTSRVTRGRP---RKSSVRTPESVVSTGPELQ--- . . ..: :. . : : : .:. : ::. : .:..::.. mKIAA0 SRTARRGSRSSIEPKTKSRTP----PRRRSSRSSPELTRKARVSRRSRSASSSPEIRSRT 680 690 700 710 720 500 510 520 530 540 mKIAA0 PLTSIEQPVI--PEP----RATRGRPSKSSIKTP------ESVVPTGPELQPLTSAKQPV : ..: . ::: :..: : : :: .: .: : :: : .. mKIAA0 PPRRRRSPSVSSPEPTEKSRSSRRRRSVSSPRTKTTSRRGRSPSPKPRGLQRSRSRSRRE 730 740 750 760 770 780 550 560 570 580 590 mKIAA0 TPNLTSRASRGRSSKSI-------RTPEPVVQT---GPEFHPSTSTEQPDTREPSSQART : : .:. ::.: :. :.. : .: . :.: ..: : : mKIAA0 KTRTTRRRDRSGSSQSTSRRRQRSRSRSRVTRRRRGGSGYHSRSPTRQESSRTSS---RR 790 800 810 820 830 840 600 610 620 630 640 650 mKIAA0 RRSAVKTPEASVPTTPELQPFTSKKQPAPKPTALVTQGRTYKPSTEDCESVGPVAPDFEP ::. .:: .: . :. .::: ...:. . . .: :. . mKIAA0 RRGRSRTPLTSRKRS------RSRTSPAPWKR---SRSRASPATHRRSRSRTPLISRRRS 850 860 870 880 890 660 670 680 690 700 mKIAA0 STSTDHLVTPKVTDQSLTLQSSPLSASPVSS--TPDLKPPVPIAQPVTPEPIPQANHQRK . :. . . ..:.. . : ::::: . . ::: . . : . ...: mKIAA0 RSRTSPV--SRRRSRSVNRRRSRSRASPVSRRRSRSRTPPVTRRRSRSRTPTRRRSRSRT 900 910 920 930 940 950 710 720 730 740 750 760 mKIAA0 RRAAGKQG-SRTVPLGHK-SYSALSEPEPQSSASQSSGASEADSPRQKRP---RRQASQK .. ... ::: :. .. : : : . : :..: ... : . : ::. :. mKIAA0 PPVTRRRSRSRTPPVTRRRSRSRTSPVTRRRSRSRTSPVTRRRSRSRTSPVTRRRSRSRT 960 970 980 990 1000 1010 770 780 790 800 810 820 mKIAA0 TVVIKEEP---VETEVKEEPQETAIPTPEKRKRDHAEEVTQGKPTRSRRTKPNQETAPKV . : ... . .... . . :.::.:... . . . .::: . mKIAA0 SPVTRRRSRSRTPPAIRRRSRSRTPLLPRKRSRSRSPLAIRRR-SRSRTPRAARGKRSLT 1020 1030 1040 1050 1060 1070 830 840 850 860 870 880 mKIAA0 LFTGVMDSRGERAVLALGGSLASSVNEASHLVTDRIRRTVKFLCALGKGIPILSLNWLYQ mKIAA0 RSPPAIRRRSASGSSSDRSRSATPPATRNHSGSRTPPVALSSSRMSCFSRPSMSPTPLDR 1080 1090 1100 1110 1120 1130 1015 residues in 1 query sequences 1768002 residues in 2168 library sequences Scomplib [34t11] start: Mon Mar 27 10:13:43 2006 done: Mon Mar 27 10:13:44 2006 Scan time: 1.070 Display time: 0.090 Function used was FASTA [version 3.4t11 Apr 17, 2002]