# /usr/local/bin/fasta34_t -T 4 -b50 -d10 -E0.01 -H -O./tmp/mpg00547.fasta.nr -Q ../query/mKIAA0170.ptfa /cdna4/rodent/rouge_util/new.rouge/nfasta/nr 2 FASTA searches a protein or DNA sequence data bank version 34.26.5 April 26, 2007 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 mKIAA0170, 1015 aa vs /cdna4/rodent/rouge_util/new.rouge/nfasta/nr library 2727779818 residues in 7921681 sequences statistics sampled from 60000 to 7895607 sequences Expectation_n fit: rho(ln(x))= 6.7978+/-0.000212; mu= 6.9073+/- 0.012 mean_var=162.2899+/-30.694, 0's: 30 Z-trim: 122 B-trim: 253 in 1/65 Lambda= 0.100677 FASTA (3.5 Sept 2006) function [optimized, BL50 matrix (15:-5)] ktup: 2 join: 39, opt: 27, open/ext: -10/-2, width: 16 The best scores are: opt bits E(7921681) gi|54887412|gb|AAH85140.1| Mdc1 protein [Mus muscu (1059) 6746 992.8 0 gi|62871658|gb|AAH94363.1| Mdc1 protein [Mus muscu (1337) 6746 992.9 0 gi|148691290|gb|EDL23237.1| mCG141147 [Mus musculu (1706) 6746 993.0 0 gi|73746802|sp|Q5PSV9.1|MDC1_MOUSE RecName: Full=M (1707) 6746 993.0 0 gi|132626693|ref|NP_001010833.2| mediator of DNA d (1708) 6746 993.0 0 gi|68565351|sp|Q767L8.1|MDC1_PIG RecName: Full=Med (2042) 2149 325.4 1.8e-85 gi|73746803|sp|Q5U2M8.2|MDC1_RAT RecName: Full=Med (1279) 2034 308.5 1.4e-80 gi|55250595|gb|AAH85955.1| Mdc1 protein [Rattus no (1336) 2034 308.5 1.4e-80 gi|109509686|ref|XP_001072849.1| PREDICTED: simila (1337) 2003 304.0 3.2e-79 gi|156914659|gb|AAI52557.1| MDC1 protein [Homo sap (1802) 1905 289.9 7.7e-75 gi|168274432|dbj|BAG09636.1| mediator of DNA damag (2089) 1812 276.5 9.9e-71 gi|68565390|sp|Q14676.3|MDC1_HUMAN RecName: Full=M (2089) 1800 274.7 3.3e-70 gi|57209811|emb|CAI41891.1| mediator of DNA damage (2089) 1800 274.7 3.3e-70 gi|123293903|emb|CAM25929.1| mediator of DNA damag (2089) 1799 274.6 3.7e-70 gi|86197957|dbj|BAE78617.1| mediator of DNA damage (2089) 1797 274.3 4.5e-70 gi|68565505|sp|Q7YR40.1|MDC1_PANTR RecName: Full=M (2171) 1785 272.6 1.5e-69 gi|194379540|dbj|BAG63736.1| unnamed protein produ (1655) 1780 271.7 2.1e-69 gi|90960870|dbj|BAE92783.1| mediator of DNA damage (2171) 1781 272.0 2.3e-69 gi|68565456|sp|Q5TM68.1|MDC1_MACMU RecName: Full=M (2173) 1759 268.8 2.1e-68 gi|149754799|ref|XP_001489683.1| PREDICTED: simila (2029) 1579 242.6 1.5e-60 gi|194677475|ref|XP_588451.4| PREDICTED: similar t (1914) 1576 242.2 1.9e-60 gi|73972152|ref|XP_532059.2| PREDICTED: similar to (1271) 1413 218.3 2e-53 gi|84040269|gb|AAI10646.1| MDC1 protein [Homo sapi ( 788) 1374 212.4 7.2e-52 gi|83754972|pdb|2ETX|A Chain A, Crystal Structure ( 209) 1156 180.2 9.9e-43 gi|88192185|pdb|2AZM|A Chain A, Crystal Structure ( 207) 1139 177.7 5.4e-42 gi|73536227|pdb|2ADO|A Chain A, Crystal Structure ( 196) 1126 175.8 1.9e-41 gi|51491242|emb|CAH18685.1| hypothetical protein [ (1121) 1090 171.3 2.4e-39 gi|109073464|ref|XP_001115241.1| PREDICTED: simila ( 178) 964 152.2 2.2e-34 gi|125839016|ref|XP_698304.2| PREDICTED: similar t (1912) 762 123.9 7.6e-25 gi|109509124|ref|XP_227971.4| PREDICTED: similar t (1341) 682 112.2 1.9e-21 gi|210087691|gb|EEA36056.1| hypothetical protein B ( 205) 611 101.0 6.6e-19 gi|149031803|gb|EDL86738.1| mediator of DNA damage ( 793) 565 94.9 1.7e-16 gi|221118001|ref|XP_002168101.1| PREDICTED: simila ( 789) 546 92.2 1.1e-15 gi|190581456|gb|EDV21533.1| hypothetical protein T ( 224) 537 90.3 1.2e-15 gi|149413128|ref|XP_001510738.1| PREDICTED: simila ( 863) 545 92.1 1.3e-15 gi|156547096|ref|XP_001602419.1| PREDICTED: simila (2649) 551 93.4 1.6e-15 gi|193913360|gb|EDW12227.1| GI17572 [Drosophila mo ( 771) 527 89.4 7.7e-15 gi|156229265|gb|EDO50061.1| predicted protein [Nem ( 198) 494 84.0 8.4e-14 gi|123270821|emb|CAM25512.1| mediator of DNA damag ( 305) 489 83.4 1.9e-13 gi|215506396|gb|EEC15890.1| conserved hypothetical ( 185) 485 82.6 2e-13 gi|115930182|ref|XP_001182889.1| PREDICTED: hypoth (1082) 492 84.5 3.3e-13 gi|221108890|ref|XP_002170370.1| PREDICTED: simila ( 175) 467 80.0 1.2e-12 gi|115943141|ref|XP_800520.2| PREDICTED: hypotheti (2262) 468 81.3 6.1e-12 gi|115679674|ref|XP_001178094.1| PREDICTED: hypoth (2192) 464 80.7 8.9e-12 gi|198151215|gb|EDY74106.1| GA28568 [Drosophila ps (1997) 462 80.4 1e-11 gi|115764762|ref|XP_001195120.1| PREDICTED: simila ( 650) 452 78.4 1.3e-11 gi|224056975|ref|XP_002190837.1| PREDICTED: simila (1388) 451 78.6 2.4e-11 gi|17566006|ref|NP_505150.1| hypothetical protein (1079) 446 77.8 3.4e-11 gi|156544393|ref|XP_001607443.1| PREDICTED: hypoth ( 972) 444 77.4 3.8e-11 gi|161086926|ref|NP_067375.3| proteoglycan 4 isofo (1221) 445 77.7 4e-11 >>gi|54887412|gb|AAH85140.1| Mdc1 protein [Mus musculus] (1059 aa) initn: 6746 init1: 6746 opt: 6746 Z-score: 5302.8 bits: 992.8 E(): 0 Smith-Waterman score: 6746; 100.000% identity (100.000% similar) in 1015 aa overlap (1-1015:45-1059) 10 20 30 mKIAA0 LSLQTPGADTLDVPWEVLATQPFCLREQSE :::::::::::::::::::::::::::::: gi|548 SQHPEAVQSLENEPTQLFPCTLPQEPGPSHLSLQTPGADTLDVPWEVLATQPFCLREQSE 20 30 40 50 60 70 40 50 60 70 80 90 mKIAA0 TSELHEAHGSQPSLPREPPGHQHLVHTSPVHTELLRIEGREIQTVEKAMGIPKEMADRMT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|548 TSELHEAHGSQPSLPREPPGHQHLVHTSPVHTELLRIEGREIQTVEKAMGIPKEMADRMT 80 90 100 110 120 130 100 110 120 130 140 150 mKIAA0 PEREPLEREIRGRTENSERDVIGEELIQGTKDREPKKVLARDSQRKEADKDLEGNRESLE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|548 PEREPLEREIRGRTENSERDVIGEELIQGTKDREPKKVLARDSQRKEADKDLEGNRESLE 140 150 160 170 180 190 160 170 180 190 200 210 mKIAA0 VEIEMSKDSQKRERKVEKPEPKREWEPADLEVTPDRGVTEEGSHDQKGQIASLTLKPGVG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|548 VEIEMSKDSQKRERKVEKPEPKREWEPADLEVTPDRGVTEEGSHDQKGQIASLTLKPGVG 200 210 220 230 240 250 220 230 240 250 260 270 mKIAA0 VKDLEGLASAPIITGSQADGGKGDPLSPGRQQRGRLSCQTTPAGKASRGDPEPPDHCLFS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|548 VKDLEGLASAPIITGSQADGGKGDPLSPGRQQRGRLSCQTTPAGKASRGDPEPPDHCLFS 260 270 280 290 300 310 280 290 300 310 320 330 mKIAA0 SVPEASTQSLLTSQSQKQSTPQPLFSTSSSEIPLPESLHTKPNVRPRRSSRMTPSPHSSA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|548 SVPEASTQSLLTSQSQKQSTPQPLFSTSSSEIPLPESLHTKPNVRPRRSSRMTPSPHSSA 320 330 340 350 360 370 340 350 360 370 380 390 mKIAA0 ALKPNTTCPTNQPAASRPTSRPTRGRANRSSTRTPELIVPVDPELQPSTSTEQPVIPKLT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|548 ALKPNTTCPTNQPAASRPTSRPTRGRANRSSTRTPELIVPVDPELQPSTSTEQPVIPKLT 380 390 400 410 420 430 400 410 420 430 440 450 mKIAA0 SQVTEGRVQMPEPLLTGPEIQSPTSTEQSVTPDRKPRATRGRPSKSPNKTPEPLISTGPE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|548 SQVTEGRVQMPEPLLTGPEIQSPTSTEQSVTPDRKPRATRGRPSKSPNKTPEPLISTGPE 440 450 460 470 480 490 460 470 480 490 500 510 mKIAA0 LQPPTSIEQPVIPKPTSRVTRGRPRKSSVRTPESVVSTGPELQPLTSIEQPVIPEPRATR :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|548 LQPPTSIEQPVIPKPTSRVTRGRPRKSSVRTPESVVSTGPELQPLTSIEQPVIPEPRATR 500 510 520 530 540 550 520 530 540 550 560 570 mKIAA0 GRPSKSSIKTPESVVPTGPELQPLTSAKQPVTPNLTSRASRGRSSKSIRTPEPVVQTGPE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|548 GRPSKSSIKTPESVVPTGPELQPLTSAKQPVTPNLTSRASRGRSSKSIRTPEPVVQTGPE 560 570 580 590 600 610 580 590 600 610 620 630 mKIAA0 FHPSTSTEQPDTREPSSQARTRRSAVKTPEASVPTTPELQPFTSKKQPAPKPTALVTQGR :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|548 FHPSTSTEQPDTREPSSQARTRRSAVKTPEASVPTTPELQPFTSKKQPAPKPTALVTQGR 620 630 640 650 660 670 640 650 660 670 680 690 mKIAA0 TYKPSTEDCESVGPVAPDFEPSTSTDHLVTPKVTDQSLTLQSSPLSASPVSSTPDLKPPV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|548 TYKPSTEDCESVGPVAPDFEPSTSTDHLVTPKVTDQSLTLQSSPLSASPVSSTPDLKPPV 680 690 700 710 720 730 700 710 720 730 740 750 mKIAA0 PIAQPVTPEPIPQANHQRKRRAAGKQGSRTVPLGHKSYSALSEPEPQSSASQSSGASEAD :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|548 PIAQPVTPEPIPQANHQRKRRAAGKQGSRTVPLGHKSYSALSEPEPQSSASQSSGASEAD 740 750 760 770 780 790 760 770 780 790 800 810 mKIAA0 SPRQKRPRRQASQKTVVIKEEPVETEVKEEPQETAIPTPEKRKRDHAEEVTQGKPTRSRR :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|548 SPRQKRPRRQASQKTVVIKEEPVETEVKEEPQETAIPTPEKRKRDHAEEVTQGKPTRSRR 800 810 820 830 840 850 820 830 840 850 860 870 mKIAA0 TKPNQETAPKVLFTGVMDSRGERAVLALGGSLASSVNEASHLVTDRIRRTVKFLCALGKG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|548 TKPNQETAPKVLFTGVMDSRGERAVLALGGSLASSVNEASHLVTDRIRRTVKFLCALGKG 860 870 880 890 900 910 880 890 900 910 920 930 mKIAA0 IPILSLNWLYQSRKAGCFLPPDDYLVTDPEQEKNFSFSLRDSLCRARERRLLEDYEIHVT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|548 IPILSLNWLYQSRKAGCFLPPDDYLVTDPEQEKNFSFSLRDSLCRARERRLLEDYEIHVT 920 930 940 950 960 970 940 950 960 970 980 990 mKIAA0 PGVQPPPPQMGEIISCCGGTFLPSMPHSYKLHRVIITCTEDLPRCAIPSRLGLPLLSPEF :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|548 PGVQPPPPQMGEIISCCGGTFLPSMPHSYKLHRVIITCTEDLPRCAIPSRLGLPLLSPEF 980 990 1000 1010 1020 1030 1000 1010 mKIAA0 LLTGVLKQEATPEAFVLSNLEMSST ::::::::::::::::::::::::: gi|548 LLTGVLKQEATPEAFVLSNLEMSST 1040 1050 >>gi|62871658|gb|AAH94363.1| Mdc1 protein [Mus musculus] (1337 aa) initn: 6746 init1: 6746 opt: 6746 Z-score: 5301.6 bits: 992.9 E(): 0 Smith-Waterman score: 6746; 100.000% identity (100.000% similar) in 1015 aa overlap (1-1015:323-1337) 10 20 30 mKIAA0 LSLQTPGADTLDVPWEVLATQPFCLREQSE :::::::::::::::::::::::::::::: gi|628 SQHPEAVQSLENEPTQLFPCTLPQEPGPSHLSLQTPGADTLDVPWEVLATQPFCLREQSE 300 310 320 330 340 350 40 50 60 70 80 90 mKIAA0 TSELHEAHGSQPSLPREPPGHQHLVHTSPVHTELLRIEGREIQTVEKAMGIPKEMADRMT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|628 TSELHEAHGSQPSLPREPPGHQHLVHTSPVHTELLRIEGREIQTVEKAMGIPKEMADRMT 360 370 380 390 400 410 100 110 120 130 140 150 mKIAA0 PEREPLEREIRGRTENSERDVIGEELIQGTKDREPKKVLARDSQRKEADKDLEGNRESLE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|628 PEREPLEREIRGRTENSERDVIGEELIQGTKDREPKKVLARDSQRKEADKDLEGNRESLE 420 430 440 450 460 470 160 170 180 190 200 210 mKIAA0 VEIEMSKDSQKRERKVEKPEPKREWEPADLEVTPDRGVTEEGSHDQKGQIASLTLKPGVG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|628 VEIEMSKDSQKRERKVEKPEPKREWEPADLEVTPDRGVTEEGSHDQKGQIASLTLKPGVG 480 490 500 510 520 530 220 230 240 250 260 270 mKIAA0 VKDLEGLASAPIITGSQADGGKGDPLSPGRQQRGRLSCQTTPAGKASRGDPEPPDHCLFS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|628 VKDLEGLASAPIITGSQADGGKGDPLSPGRQQRGRLSCQTTPAGKASRGDPEPPDHCLFS 540 550 560 570 580 590 280 290 300 310 320 330 mKIAA0 SVPEASTQSLLTSQSQKQSTPQPLFSTSSSEIPLPESLHTKPNVRPRRSSRMTPSPHSSA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|628 SVPEASTQSLLTSQSQKQSTPQPLFSTSSSEIPLPESLHTKPNVRPRRSSRMTPSPHSSA 600 610 620 630 640 650 340 350 360 370 380 390 mKIAA0 ALKPNTTCPTNQPAASRPTSRPTRGRANRSSTRTPELIVPVDPELQPSTSTEQPVIPKLT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|628 ALKPNTTCPTNQPAASRPTSRPTRGRANRSSTRTPELIVPVDPELQPSTSTEQPVIPKLT 660 670 680 690 700 710 400 410 420 430 440 450 mKIAA0 SQVTEGRVQMPEPLLTGPEIQSPTSTEQSVTPDRKPRATRGRPSKSPNKTPEPLISTGPE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|628 SQVTEGRVQMPEPLLTGPEIQSPTSTEQSVTPDRKPRATRGRPSKSPNKTPEPLISTGPE 720 730 740 750 760 770 460 470 480 490 500 510 mKIAA0 LQPPTSIEQPVIPKPTSRVTRGRPRKSSVRTPESVVSTGPELQPLTSIEQPVIPEPRATR :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|628 LQPPTSIEQPVIPKPTSRVTRGRPRKSSVRTPESVVSTGPELQPLTSIEQPVIPEPRATR 780 790 800 810 820 830 520 530 540 550 560 570 mKIAA0 GRPSKSSIKTPESVVPTGPELQPLTSAKQPVTPNLTSRASRGRSSKSIRTPEPVVQTGPE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|628 GRPSKSSIKTPESVVPTGPELQPLTSAKQPVTPNLTSRASRGRSSKSIRTPEPVVQTGPE 840 850 860 870 880 890 580 590 600 610 620 630 mKIAA0 FHPSTSTEQPDTREPSSQARTRRSAVKTPEASVPTTPELQPFTSKKQPAPKPTALVTQGR :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|628 FHPSTSTEQPDTREPSSQARTRRSAVKTPEASVPTTPELQPFTSKKQPAPKPTALVTQGR 900 910 920 930 940 950 640 650 660 670 680 690 mKIAA0 TYKPSTEDCESVGPVAPDFEPSTSTDHLVTPKVTDQSLTLQSSPLSASPVSSTPDLKPPV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|628 TYKPSTEDCESVGPVAPDFEPSTSTDHLVTPKVTDQSLTLQSSPLSASPVSSTPDLKPPV 960 970 980 990 1000 1010 700 710 720 730 740 750 mKIAA0 PIAQPVTPEPIPQANHQRKRRAAGKQGSRTVPLGHKSYSALSEPEPQSSASQSSGASEAD :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|628 PIAQPVTPEPIPQANHQRKRRAAGKQGSRTVPLGHKSYSALSEPEPQSSASQSSGASEAD 1020 1030 1040 1050 1060 1070 760 770 780 790 800 810 mKIAA0 SPRQKRPRRQASQKTVVIKEEPVETEVKEEPQETAIPTPEKRKRDHAEEVTQGKPTRSRR :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|628 SPRQKRPRRQASQKTVVIKEEPVETEVKEEPQETAIPTPEKRKRDHAEEVTQGKPTRSRR 1080 1090 1100 1110 1120 1130 820 830 840 850 860 870 mKIAA0 TKPNQETAPKVLFTGVMDSRGERAVLALGGSLASSVNEASHLVTDRIRRTVKFLCALGKG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|628 TKPNQETAPKVLFTGVMDSRGERAVLALGGSLASSVNEASHLVTDRIRRTVKFLCALGKG 1140 1150 1160 1170 1180 1190 880 890 900 910 920 930 mKIAA0 IPILSLNWLYQSRKAGCFLPPDDYLVTDPEQEKNFSFSLRDSLCRARERRLLEDYEIHVT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|628 IPILSLNWLYQSRKAGCFLPPDDYLVTDPEQEKNFSFSLRDSLCRARERRLLEDYEIHVT 1200 1210 1220 1230 1240 1250 940 950 960 970 980 990 mKIAA0 PGVQPPPPQMGEIISCCGGTFLPSMPHSYKLHRVIITCTEDLPRCAIPSRLGLPLLSPEF :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|628 PGVQPPPPQMGEIISCCGGTFLPSMPHSYKLHRVIITCTEDLPRCAIPSRLGLPLLSPEF 1260 1270 1280 1290 1300 1310 1000 1010 mKIAA0 LLTGVLKQEATPEAFVLSNLEMSST ::::::::::::::::::::::::: gi|628 LLTGVLKQEATPEAFVLSNLEMSST 1320 1330 >>gi|148691290|gb|EDL23237.1| mCG141147 [Mus musculus] (1706 aa) initn: 6746 init1: 6746 opt: 6746 Z-score: 5300.3 bits: 993.0 E(): 0 Smith-Waterman score: 6746; 100.000% identity (100.000% similar) in 1015 aa overlap (1-1015:692-1706) 10 20 30 mKIAA0 LSLQTPGADTLDVPWEVLATQPFCLREQSE :::::::::::::::::::::::::::::: gi|148 SQHPEAVQSLENEPTQLFPCTLPQEPGPSHLSLQTPGADTLDVPWEVLATQPFCLREQSE 670 680 690 700 710 720 40 50 60 70 80 90 mKIAA0 TSELHEAHGSQPSLPREPPGHQHLVHTSPVHTELLRIEGREIQTVEKAMGIPKEMADRMT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|148 TSELHEAHGSQPSLPREPPGHQHLVHTSPVHTELLRIEGREIQTVEKAMGIPKEMADRMT 730 740 750 760 770 780 100 110 120 130 140 150 mKIAA0 PEREPLEREIRGRTENSERDVIGEELIQGTKDREPKKVLARDSQRKEADKDLEGNRESLE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|148 PEREPLEREIRGRTENSERDVIGEELIQGTKDREPKKVLARDSQRKEADKDLEGNRESLE 790 800 810 820 830 840 160 170 180 190 200 210 mKIAA0 VEIEMSKDSQKRERKVEKPEPKREWEPADLEVTPDRGVTEEGSHDQKGQIASLTLKPGVG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|148 VEIEMSKDSQKRERKVEKPEPKREWEPADLEVTPDRGVTEEGSHDQKGQIASLTLKPGVG 850 860 870 880 890 900 220 230 240 250 260 270 mKIAA0 VKDLEGLASAPIITGSQADGGKGDPLSPGRQQRGRLSCQTTPAGKASRGDPEPPDHCLFS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|148 VKDLEGLASAPIITGSQADGGKGDPLSPGRQQRGRLSCQTTPAGKASRGDPEPPDHCLFS 910 920 930 940 950 960 280 290 300 310 320 330 mKIAA0 SVPEASTQSLLTSQSQKQSTPQPLFSTSSSEIPLPESLHTKPNVRPRRSSRMTPSPHSSA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|148 SVPEASTQSLLTSQSQKQSTPQPLFSTSSSEIPLPESLHTKPNVRPRRSSRMTPSPHSSA 970 980 990 1000 1010 1020 340 350 360 370 380 390 mKIAA0 ALKPNTTCPTNQPAASRPTSRPTRGRANRSSTRTPELIVPVDPELQPSTSTEQPVIPKLT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|148 ALKPNTTCPTNQPAASRPTSRPTRGRANRSSTRTPELIVPVDPELQPSTSTEQPVIPKLT 1030 1040 1050 1060 1070 1080 400 410 420 430 440 450 mKIAA0 SQVTEGRVQMPEPLLTGPEIQSPTSTEQSVTPDRKPRATRGRPSKSPNKTPEPLISTGPE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|148 SQVTEGRVQMPEPLLTGPEIQSPTSTEQSVTPDRKPRATRGRPSKSPNKTPEPLISTGPE 1090 1100 1110 1120 1130 1140 460 470 480 490 500 510 mKIAA0 LQPPTSIEQPVIPKPTSRVTRGRPRKSSVRTPESVVSTGPELQPLTSIEQPVIPEPRATR :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|148 LQPPTSIEQPVIPKPTSRVTRGRPRKSSVRTPESVVSTGPELQPLTSIEQPVIPEPRATR 1150 1160 1170 1180 1190 1200 520 530 540 550 560 570 mKIAA0 GRPSKSSIKTPESVVPTGPELQPLTSAKQPVTPNLTSRASRGRSSKSIRTPEPVVQTGPE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|148 GRPSKSSIKTPESVVPTGPELQPLTSAKQPVTPNLTSRASRGRSSKSIRTPEPVVQTGPE 1210 1220 1230 1240 1250 1260 580 590 600 610 620 630 mKIAA0 FHPSTSTEQPDTREPSSQARTRRSAVKTPEASVPTTPELQPFTSKKQPAPKPTALVTQGR :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|148 FHPSTSTEQPDTREPSSQARTRRSAVKTPEASVPTTPELQPFTSKKQPAPKPTALVTQGR 1270 1280 1290 1300 1310 1320 640 650 660 670 680 690 mKIAA0 TYKPSTEDCESVGPVAPDFEPSTSTDHLVTPKVTDQSLTLQSSPLSASPVSSTPDLKPPV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|148 TYKPSTEDCESVGPVAPDFEPSTSTDHLVTPKVTDQSLTLQSSPLSASPVSSTPDLKPPV 1330 1340 1350 1360 1370 1380 700 710 720 730 740 750 mKIAA0 PIAQPVTPEPIPQANHQRKRRAAGKQGSRTVPLGHKSYSALSEPEPQSSASQSSGASEAD :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|148 PIAQPVTPEPIPQANHQRKRRAAGKQGSRTVPLGHKSYSALSEPEPQSSASQSSGASEAD 1390 1400 1410 1420 1430 1440 760 770 780 790 800 810 mKIAA0 SPRQKRPRRQASQKTVVIKEEPVETEVKEEPQETAIPTPEKRKRDHAEEVTQGKPTRSRR :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|148 SPRQKRPRRQASQKTVVIKEEPVETEVKEEPQETAIPTPEKRKRDHAEEVTQGKPTRSRR 1450 1460 1470 1480 1490 1500 820 830 840 850 860 870 mKIAA0 TKPNQETAPKVLFTGVMDSRGERAVLALGGSLASSVNEASHLVTDRIRRTVKFLCALGKG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|148 TKPNQETAPKVLFTGVMDSRGERAVLALGGSLASSVNEASHLVTDRIRRTVKFLCALGKG 1510 1520 1530 1540 1550 1560 880 890 900 910 920 930 mKIAA0 IPILSLNWLYQSRKAGCFLPPDDYLVTDPEQEKNFSFSLRDSLCRARERRLLEDYEIHVT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|148 IPILSLNWLYQSRKAGCFLPPDDYLVTDPEQEKNFSFSLRDSLCRARERRLLEDYEIHVT 1570 1580 1590 1600 1610 1620 940 950 960 970 980 990 mKIAA0 PGVQPPPPQMGEIISCCGGTFLPSMPHSYKLHRVIITCTEDLPRCAIPSRLGLPLLSPEF :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|148 PGVQPPPPQMGEIISCCGGTFLPSMPHSYKLHRVIITCTEDLPRCAIPSRLGLPLLSPEF 1630 1640 1650 1660 1670 1680 1000 1010 mKIAA0 LLTGVLKQEATPEAFVLSNLEMSST ::::::::::::::::::::::::: gi|148 LLTGVLKQEATPEAFVLSNLEMSST 1690 1700 >>gi|73746802|sp|Q5PSV9.1|MDC1_MOUSE RecName: Full=Media (1707 aa) initn: 6746 init1: 6746 opt: 6746 Z-score: 5300.3 bits: 993.0 E(): 0 Smith-Waterman score: 6746; 100.000% identity (100.000% similar) in 1015 aa overlap (1-1015:693-1707) 10 20 30 mKIAA0 LSLQTPGADTLDVPWEVLATQPFCLREQSE :::::::::::::::::::::::::::::: gi|737 SQHPEAVQSLENEPTQLFPCTLPQEPGPSHLSLQTPGADTLDVPWEVLATQPFCLREQSE 670 680 690 700 710 720 40 50 60 70 80 90 mKIAA0 TSELHEAHGSQPSLPREPPGHQHLVHTSPVHTELLRIEGREIQTVEKAMGIPKEMADRMT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|737 TSELHEAHGSQPSLPREPPGHQHLVHTSPVHTELLRIEGREIQTVEKAMGIPKEMADRMT 730 740 750 760 770 780 100 110 120 130 140 150 mKIAA0 PEREPLEREIRGRTENSERDVIGEELIQGTKDREPKKVLARDSQRKEADKDLEGNRESLE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|737 PEREPLEREIRGRTENSERDVIGEELIQGTKDREPKKVLARDSQRKEADKDLEGNRESLE 790 800 810 820 830 840 160 170 180 190 200 210 mKIAA0 VEIEMSKDSQKRERKVEKPEPKREWEPADLEVTPDRGVTEEGSHDQKGQIASLTLKPGVG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|737 VEIEMSKDSQKRERKVEKPEPKREWEPADLEVTPDRGVTEEGSHDQKGQIASLTLKPGVG 850 860 870 880 890 900 220 230 240 250 260 270 mKIAA0 VKDLEGLASAPIITGSQADGGKGDPLSPGRQQRGRLSCQTTPAGKASRGDPEPPDHCLFS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|737 VKDLEGLASAPIITGSQADGGKGDPLSPGRQQRGRLSCQTTPAGKASRGDPEPPDHCLFS 910 920 930 940 950 960 280 290 300 310 320 330 mKIAA0 SVPEASTQSLLTSQSQKQSTPQPLFSTSSSEIPLPESLHTKPNVRPRRSSRMTPSPHSSA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|737 SVPEASTQSLLTSQSQKQSTPQPLFSTSSSEIPLPESLHTKPNVRPRRSSRMTPSPHSSA 970 980 990 1000 1010 1020 340 350 360 370 380 390 mKIAA0 ALKPNTTCPTNQPAASRPTSRPTRGRANRSSTRTPELIVPVDPELQPSTSTEQPVIPKLT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|737 ALKPNTTCPTNQPAASRPTSRPTRGRANRSSTRTPELIVPVDPELQPSTSTEQPVIPKLT 1030 1040 1050 1060 1070 1080 400 410 420 430 440 450 mKIAA0 SQVTEGRVQMPEPLLTGPEIQSPTSTEQSVTPDRKPRATRGRPSKSPNKTPEPLISTGPE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|737 SQVTEGRVQMPEPLLTGPEIQSPTSTEQSVTPDRKPRATRGRPSKSPNKTPEPLISTGPE 1090 1100 1110 1120 1130 1140 460 470 480 490 500 510 mKIAA0 LQPPTSIEQPVIPKPTSRVTRGRPRKSSVRTPESVVSTGPELQPLTSIEQPVIPEPRATR :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|737 LQPPTSIEQPVIPKPTSRVTRGRPRKSSVRTPESVVSTGPELQPLTSIEQPVIPEPRATR 1150 1160 1170 1180 1190 1200 520 530 540 550 560 570 mKIAA0 GRPSKSSIKTPESVVPTGPELQPLTSAKQPVTPNLTSRASRGRSSKSIRTPEPVVQTGPE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|737 GRPSKSSIKTPESVVPTGPELQPLTSAKQPVTPNLTSRASRGRSSKSIRTPEPVVQTGPE 1210 1220 1230 1240 1250 1260 580 590 600 610 620 630 mKIAA0 FHPSTSTEQPDTREPSSQARTRRSAVKTPEASVPTTPELQPFTSKKQPAPKPTALVTQGR :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|737 FHPSTSTEQPDTREPSSQARTRRSAVKTPEASVPTTPELQPFTSKKQPAPKPTALVTQGR 1270 1280 1290 1300 1310 1320 640 650 660 670 680 690 mKIAA0 TYKPSTEDCESVGPVAPDFEPSTSTDHLVTPKVTDQSLTLQSSPLSASPVSSTPDLKPPV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|737 TYKPSTEDCESVGPVAPDFEPSTSTDHLVTPKVTDQSLTLQSSPLSASPVSSTPDLKPPV 1330 1340 1350 1360 1370 1380 700 710 720 730 740 750 mKIAA0 PIAQPVTPEPIPQANHQRKRRAAGKQGSRTVPLGHKSYSALSEPEPQSSASQSSGASEAD :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|737 PIAQPVTPEPIPQANHQRKRRAAGKQGSRTVPLGHKSYSALSEPEPQSSASQSSGASEAD 1390 1400 1410 1420 1430 1440 760 770 780 790 800 810 mKIAA0 SPRQKRPRRQASQKTVVIKEEPVETEVKEEPQETAIPTPEKRKRDHAEEVTQGKPTRSRR :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|737 SPRQKRPRRQASQKTVVIKEEPVETEVKEEPQETAIPTPEKRKRDHAEEVTQGKPTRSRR 1450 1460 1470 1480 1490 1500 820 830 840 850 860 870 mKIAA0 TKPNQETAPKVLFTGVMDSRGERAVLALGGSLASSVNEASHLVTDRIRRTVKFLCALGKG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|737 TKPNQETAPKVLFTGVMDSRGERAVLALGGSLASSVNEASHLVTDRIRRTVKFLCALGKG 1510 1520 1530 1540 1550 1560 880 890 900 910 920 930 mKIAA0 IPILSLNWLYQSRKAGCFLPPDDYLVTDPEQEKNFSFSLRDSLCRARERRLLEDYEIHVT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|737 IPILSLNWLYQSRKAGCFLPPDDYLVTDPEQEKNFSFSLRDSLCRARERRLLEDYEIHVT 1570 1580 1590 1600 1610 1620 940 950 960 970 980 990 mKIAA0 PGVQPPPPQMGEIISCCGGTFLPSMPHSYKLHRVIITCTEDLPRCAIPSRLGLPLLSPEF :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|737 PGVQPPPPQMGEIISCCGGTFLPSMPHSYKLHRVIITCTEDLPRCAIPSRLGLPLLSPEF 1630 1640 1650 1660 1670 1680 1000 1010 mKIAA0 LLTGVLKQEATPEAFVLSNLEMSST ::::::::::::::::::::::::: gi|737 LLTGVLKQEATPEAFVLSNLEMSST 1690 1700 >>gi|132626693|ref|NP_001010833.2| mediator of DNA damag (1708 aa) initn: 6746 init1: 6746 opt: 6746 Z-score: 5300.3 bits: 993.0 E(): 0 Smith-Waterman score: 6746; 100.000% identity (100.000% similar) in 1015 aa overlap (1-1015:694-1708) 10 20 30 mKIAA0 LSLQTPGADTLDVPWEVLATQPFCLREQSE :::::::::::::::::::::::::::::: gi|132 SQHPEAVQSLENEPTQLFPCTLPQEPGPSHLSLQTPGADTLDVPWEVLATQPFCLREQSE 670 680 690 700 710 720 40 50 60 70 80 90 mKIAA0 TSELHEAHGSQPSLPREPPGHQHLVHTSPVHTELLRIEGREIQTVEKAMGIPKEMADRMT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|132 TSELHEAHGSQPSLPREPPGHQHLVHTSPVHTELLRIEGREIQTVEKAMGIPKEMADRMT 730 740 750 760 770 780 100 110 120 130 140 150 mKIAA0 PEREPLEREIRGRTENSERDVIGEELIQGTKDREPKKVLARDSQRKEADKDLEGNRESLE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|132 PEREPLEREIRGRTENSERDVIGEELIQGTKDREPKKVLARDSQRKEADKDLEGNRESLE 790 800 810 820 830 840 160 170 180 190 200 210 mKIAA0 VEIEMSKDSQKRERKVEKPEPKREWEPADLEVTPDRGVTEEGSHDQKGQIASLTLKPGVG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|132 VEIEMSKDSQKRERKVEKPEPKREWEPADLEVTPDRGVTEEGSHDQKGQIASLTLKPGVG 850 860 870 880 890 900 220 230 240 250 260 270 mKIAA0 VKDLEGLASAPIITGSQADGGKGDPLSPGRQQRGRLSCQTTPAGKASRGDPEPPDHCLFS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|132 VKDLEGLASAPIITGSQADGGKGDPLSPGRQQRGRLSCQTTPAGKASRGDPEPPDHCLFS 910 920 930 940 950 960 280 290 300 310 320 330 mKIAA0 SVPEASTQSLLTSQSQKQSTPQPLFSTSSSEIPLPESLHTKPNVRPRRSSRMTPSPHSSA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|132 SVPEASTQSLLTSQSQKQSTPQPLFSTSSSEIPLPESLHTKPNVRPRRSSRMTPSPHSSA 970 980 990 1000 1010 1020 340 350 360 370 380 390 mKIAA0 ALKPNTTCPTNQPAASRPTSRPTRGRANRSSTRTPELIVPVDPELQPSTSTEQPVIPKLT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|132 ALKPNTTCPTNQPAASRPTSRPTRGRANRSSTRTPELIVPVDPELQPSTSTEQPVIPKLT 1030 1040 1050 1060 1070 1080 400 410 420 430 440 450 mKIAA0 SQVTEGRVQMPEPLLTGPEIQSPTSTEQSVTPDRKPRATRGRPSKSPNKTPEPLISTGPE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|132 SQVTEGRVQMPEPLLTGPEIQSPTSTEQSVTPDRKPRATRGRPSKSPNKTPEPLISTGPE 1090 1100 1110 1120 1130 1140 460 470 480 490 500 510 mKIAA0 LQPPTSIEQPVIPKPTSRVTRGRPRKSSVRTPESVVSTGPELQPLTSIEQPVIPEPRATR :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|132 LQPPTSIEQPVIPKPTSRVTRGRPRKSSVRTPESVVSTGPELQPLTSIEQPVIPEPRATR 1150 1160 1170 1180 1190 1200 520 530 540 550 560 570 mKIAA0 GRPSKSSIKTPESVVPTGPELQPLTSAKQPVTPNLTSRASRGRSSKSIRTPEPVVQTGPE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|132 GRPSKSSIKTPESVVPTGPELQPLTSAKQPVTPNLTSRASRGRSSKSIRTPEPVVQTGPE 1210 1220 1230 1240 1250 1260 580 590 600 610 620 630 mKIAA0 FHPSTSTEQPDTREPSSQARTRRSAVKTPEASVPTTPELQPFTSKKQPAPKPTALVTQGR :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|132 FHPSTSTEQPDTREPSSQARTRRSAVKTPEASVPTTPELQPFTSKKQPAPKPTALVTQGR 1270 1280 1290 1300 1310 1320 640 650 660 670 680 690 mKIAA0 TYKPSTEDCESVGPVAPDFEPSTSTDHLVTPKVTDQSLTLQSSPLSASPVSSTPDLKPPV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|132 TYKPSTEDCESVGPVAPDFEPSTSTDHLVTPKVTDQSLTLQSSPLSASPVSSTPDLKPPV 1330 1340 1350 1360 1370 1380 700 710 720 730 740 750 mKIAA0 PIAQPVTPEPIPQANHQRKRRAAGKQGSRTVPLGHKSYSALSEPEPQSSASQSSGASEAD :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|132 PIAQPVTPEPIPQANHQRKRRAAGKQGSRTVPLGHKSYSALSEPEPQSSASQSSGASEAD 1390 1400 1410 1420 1430 1440 760 770 780 790 800 810 mKIAA0 SPRQKRPRRQASQKTVVIKEEPVETEVKEEPQETAIPTPEKRKRDHAEEVTQGKPTRSRR :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|132 SPRQKRPRRQASQKTVVIKEEPVETEVKEEPQETAIPTPEKRKRDHAEEVTQGKPTRSRR 1450 1460 1470 1480 1490 1500 820 830 840 850 860 870 mKIAA0 TKPNQETAPKVLFTGVMDSRGERAVLALGGSLASSVNEASHLVTDRIRRTVKFLCALGKG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|132 TKPNQETAPKVLFTGVMDSRGERAVLALGGSLASSVNEASHLVTDRIRRTVKFLCALGKG 1510 1520 1530 1540 1550 1560 880 890 900 910 920 930 mKIAA0 IPILSLNWLYQSRKAGCFLPPDDYLVTDPEQEKNFSFSLRDSLCRARERRLLEDYEIHVT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|132 IPILSLNWLYQSRKAGCFLPPDDYLVTDPEQEKNFSFSLRDSLCRARERRLLEDYEIHVT 1570 1580 1590 1600 1610 1620 940 950 960 970 980 990 mKIAA0 PGVQPPPPQMGEIISCCGGTFLPSMPHSYKLHRVIITCTEDLPRCAIPSRLGLPLLSPEF :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|132 PGVQPPPPQMGEIISCCGGTFLPSMPHSYKLHRVIITCTEDLPRCAIPSRLGLPLLSPEF 1630 1640 1650 1660 1670 1680 1000 1010 mKIAA0 LLTGVLKQEATPEAFVLSNLEMSST ::::::::::::::::::::::::: gi|132 LLTGVLKQEATPEAFVLSNLEMSST 1690 1700 >>gi|68565351|sp|Q767L8.1|MDC1_PIG RecName: Full=Mediato (2042 aa) initn: 1727 init1: 1177 opt: 2149 Z-score: 1690.8 bits: 325.4 E(): 1.8e-85 Smith-Waterman score: 2913; 45.503% identity (59.713% similar) in 1323 aa overlap (2-1014:729-2041) 10 20 30 mKIAA0 LSLQTPGADTLDVPWEVLATQPFCLREQSET :.:. : ::: :::.::::::: :: ::. gi|685 QSPEAVPSMEDEPTQAFPSTLPQEPGPSCCSFQASG--TLDEPWELLATQPFCPRE-SEA 700 710 720 730 740 750 40 50 60 70 80 mKIAA0 SELH------EAHGSQPSLPREPPGHQHLVHTSPVHTELLRIEGREIQTVEKAMGIPKEM ::.. ::.: :: :: .:: : : : .: :::::: : :.: gi|685 SEIQPVDTHLEARGLCPSPPRAALPEQH-----PESPEPLGSQGGGRQTVEKATGTPRET 760 770 780 790 800 810 90 100 110 120 130 140 mKIAA0 ADRMTPEREPLEREIRGRTENSERDVIGEE-LIQGTKDREPKKVLARDSQRKEADKDL-- :. :::: :::: . ..:: .::: : .::.::: :.::: .::.:.:. . gi|685 AEGPTPERGPLERATKEPPSEGERGGMGEEGLPRGTQDREEKQVLAGVTQRQESDRTVKS 820 830 840 850 860 870 150 160 170 180 mKIAA0 ---EGNRESLEVEIEMSKDSQKRE------------RKVEKPEPKREWEPADLEV-TP-- .:. :::.:::: :. :. : :..::: .:: : . :: .: gi|685 TSTDGGLESLQVEIETPKEMQENEIEKQTLARDMLEREAEKPVAERESEAGGPEVKVPEA 880 890 900 910 920 930 190 200 210 220 230 mKIAA0 --DRG---VTEEG-SHDQKGQIASLTLKPGVGVKDLEGLASAPIITGSQADGGKGDPLSP ::: . :: :.::::: ..:: .::.:: :.:::::: ::: :: :.:: gi|685 VQDRGPLRAEAEGTSQDQKGQASNLTPEPGAGVGYLQGLASAPAAPRSQAGGGGEAPVSP 940 950 960 970 980 990 240 250 260 270 280 mKIAA0 GRQQRGRLSCQTTPAGKAS------------RGDPEPPDHCLFSSVPEAST--QSLLTSQ ::::: :.:. :: :.. .:: : :. :: ::::. :. : :: gi|685 RRQQRGDLNCKMPPAEKSGVRAAFSPSLPSPHGDQESPEACLPPEPPEASAPLQNPLPSQ 1000 1010 1020 1030 1040 1050 290 300 mKIAA0 S---------------------------QKQSTPQPLFSTSS-----------------S : :.: .:.: ::. : gi|685 SPKHPAPQSRLSPPPPPLEQSTPRTRPPQSQESPEPPFSSELDPPNPEPKVRPQGSPPLS 1060 1070 1080 1090 1100 1110 310 mKIAA0 EIPL-------------PE--------SLHT----------------------------K ::: :: . : : gi|685 PIPLEAHPTSPTDQAGSPEPTSRAARGGTHRSFEVTPMSVVPTALELQSSTSADQPVVPK 1120 1130 1140 1150 1160 1170 320 330 340 350 360 mKIAA0 PNVR-P----RRSSRMTPSPHSSAA--LKPNTTCPTNQPAASRPTSRPTRGRANRSSTRT :..: : .::: :: :. .: :.:.: ::.::.: .: :: ::::. :.:..: gi|685 PTLRAPWGRTHRSSVKTPEPNIPTAPELQPST--PTDQPVAPEPLSRATRGRTPRASVKT 1180 1190 1200 1210 1220 370 380 390 400 mKIAA0 PELIVPVDPELQPSTSTEQPVIPKLTSQVTEGR-----VQMPEPLL-TGPE--------- : .::. :: :::: :.:::.:: : .. .:: :. ::: . :.:: gi|685 SEPVVPAAPEPQPSTPTDQPVVPKPTLRAPRGRTHRSSVKTPEPNIPTAPELRPSTPTDQ 1230 1240 1250 1260 1270 1280 410 420 430 mKIAA0 -------------------IQSP--------------TSTEQSVTPDRKPRATRGRPSKS ..:: : :.: ::: :::::: .: gi|685 PVAPEPLSRATRGRTPRASVKSPEQNVPTAPEHPQPSTPTDQPVTPKPTSRATRGRAHRS 1290 1300 1310 1320 1330 1340 440 450 460 470 mKIAA0 PNKTP---EPLISTG----------------------PELQPPTSIEQPVIPKPTSRVTR ::: ::: :.. :::::::: ::: :.:::..:: gi|685 SVKTPAASEPLPSASTDQPITPKPTSRGRAHRSSAKTPELQPPTSTGQPVTPRPTSQATR 1350 1360 1370 1380 1390 1400 480 490 500 510 520 mKIAA0 GRPRKSSVRTPESVVSTGPELQPLTSIEQPVIPE--PRATRGRPSKSSIKTPESVVPTGP :: ..::..::: :: : :: :: : .::. :: ::::: .::.:::: :::: : gi|685 GRTHRSSIKTPEPVVPTDPEPQPSTPTDQPITPELTSAATRGRTRRSSVKTPEPVVPTDP 1410 1420 1430 1440 1450 1460 530 540 550 560 570 580 mKIAA0 ELQPLTSAKQPVTPNLTSRASRGRSSKS-IRTPEPVVQTGPEFHPSTSTEQPDTREPSSQ : :: : . ::.::. :: :.::.. .: ..:::: : : :: .::: :.:: : .:.:. gi|685 EPQPSTPTDQPITPKPTSWATRGQAHRSSVKTPEPHVPTDPEPQPSTPTDQPVTPKPTSR 1470 1480 1490 1500 1510 1520 590 600 610 mKIAA0 A---RTRRSAVKTPEASVPT------------------------------TPELQPFTSK : :.:.:.::::: .::: :::::: :: gi|685 ATRGRARKSSVKTPEPAVPTAAEPQPSASTDQPITPKPTSRGRAHRSSAKTPELQPPTST 1530 1540 1550 1560 1570 1580 620 630 640 650 660 670 mKIAA0 KQP-APKPTALVTQGRTYKPSTEDCESVGPVAPDFEPSTSTDHLVTPKVT---DQSLTLQ :: .:.::. .:::::.. :.. ..: :.:::.:: . . ::::: :. :. gi|685 GQPFTPRPTSGATQGRTHRSSAKTSQAVEPTAPDLEPPSPIGQPVTPKVIAEGGQNRILR 1590 1600 1610 1620 1630 1640 680 690 700 710 720 730 mKIAA0 SSPLSASPVSSTPDLKPPVPIAQPVTPEPIPQANHQRKRRAAGKQGSRTVPLGHKSYSAL :: ..: : . :.:. ::: ::: :::::.:. .:. ::. :. : :. .: :: gi|685 SSRVGAVPGPTPPELQCPVPTEQPVPPEPIPRASCSRRPRATRKRESLTAHVGPDPCSAP 1650 1660 1670 1680 1690 1700 740 750 mKIAA0 SEPEPQSSASQSSGASE-----------ADSPR---------------------QKR--- ::. .:: .:: ... : .:. ::: gi|685 PEPNSRSSRTQSLSTTPEPTLPQLPEAPAHAPQIPKVEAAGRPGFTLEPQPKATQKRKRP 1710 1720 1730 1740 1750 1760 760 770 780 790 800 mKIAA0 ---------PRR----QASQKTVVIKEEPVETEVKEEPQETAIPTPEKRKRDHAEEVTQG :.: .. :::...:: : . ....:: : :::::..:: .: gi|685 LAPADSPPLPKRLQRGEVPPKTVILEEEENPTARPGREEDAVIPEPGKRKRDQTEEEPRG 1770 1780 1790 1800 1810 1820 810 820 830 840 850 860 mKIAA0 KPTRS-RRTKPNQE-TAPKVLFTGVMDSRGERAVLALGGSLASSVNEASHLVTDRIRRTV :.:: ::::: :: :::.::::::.:.::::::::::::::::: :::::::::::::: gi|685 VPSRSLRRTKPAQESTAPRVLFTGVVDARGERAVLALGGSLASSVAEASHLVTDRIRRTV 1830 1840 1850 1860 1870 1880 870 880 890 900 910 920 mKIAA0 KFLCALGKGIPILSLNWLYQSRKAGCFLPPDDYLVTDPEQEKNFSFSLRDSLCRARERRL :::::::.:::::::.::.::::::::::::.:.::::::::::.::::..: :::::.: gi|685 KFLCALGRGIPILSLDWLHQSRKAGCFLPPDEYVVTDPEQEKNFGFSLREALSRARERKL 1890 1900 1910 1920 1930 1940 930 940 950 960 970 980 mKIAA0 LEDYEIHVTPGVQPPPPQMGEIISCCGGTFLPSMPHSYKLHRVIITCTEDLPRCAIPSRL :: :::::::::::::::::::::::::: :::::.::: .::.:::..:.:::..: :: gi|685 LEGYEIHVTPGVQPPPPQMGEIISCCGGTVLPSMPRSYKPQRVVITCSQDFPRCSVPFRL 1950 1960 1970 1980 1990 2000 990 1000 1010 mKIAA0 GLPLLSPEFLLTGVLKQEATPEAFVLSNLEMSST :::.::::::::::::::: :::::::.:::.: gi|685 GLPVLSPEFLLTGVLKQEAKPEAFVLSTLEMASA 2010 2020 2030 2040 >>gi|73746803|sp|Q5U2M8.2|MDC1_RAT RecName: Full=Mediato (1279 aa) initn: 2661 init1: 1275 opt: 2034 Z-score: 1603.0 bits: 308.5 E(): 1.4e-80 Smith-Waterman score: 2453; 50.343% identity (53.876% similar) in 1019 aa overlap (1-1012:685-1279) 10 20 30 mKIAA0 LSLQTPGADTLDVPWEVLATQPFCLREQSE ::: ::::::::::::::::::::::::.: gi|737 ESQHPGAVQSLEDEPTQVFPCLPQEPGPSHLSLPTPGADTLDVPWEVLATQPFCLREQTE 660 670 680 690 700 710 40 50 60 70 80 mKIAA0 TSE---LHEAHGSQPSLPREPPGHQHLVHTSPVHTELLRIEGREIQTVEKAMGIPKEMAD ::: ::::::::::: ::::::: : :: :::::::. ::.:::::::: gi|737 TSEPIDTHEAHGSQPSLPGEPPGHQHPVPTSLDHTELLRIDDREMQTVEKAMG------- 720 730 740 750 760 90 100 110 120 130 140 mKIAA0 RMTPEREPLEREIRGRTENSERDVIGEELIQGTKDREPKKVLARDSQRKEADKDLEGNRE gi|737 ------------------------------------------------------------ 150 160 170 180 190 200 mKIAA0 SLEVEIEMSKDSQKRERKVEKPEPKREWEPADLEVTPDRGVTEEGSHDQKGQIASLTLKP : gi|737 ----------------------------------------------H------------- 210 220 230 240 250 260 mKIAA0 GVGVKDLEGLASAPIITGSQADGGKGDPLSPGRQQRGRLSCQTTPAGKASRGDPEPPDHC :::: : :::: :::: :: gi|737 --------------------------------------LSCQMMPDGKASGDDPEPSDHR 770 780 790 270 280 290 300 310 320 mKIAA0 LFSSVPEAST--QSLLTSQSQKQSTPQPLFSTSSSEIPLPESLHTKPNVRPRRSSRMTPS ::: :::::. ::::::::::::::::.: :::::. :::.:::::::::::::::::: gi|737 LFSPVPEASASPQSLLTSQSQKQSTPQPMFPTSSSELALPETLHTKPNVRPRRSSRMTPS 800 810 820 830 840 850 330 340 350 360 370 380 mKIAA0 PHSSAALKPNTTCPTNQPAASRPTSRPTRGRANRSSTRTPELIVPVDPELQPSTSTEQPV ::::::::: :::::::::::::::::::::::::::::::::::. :::::::::::: gi|737 PHSSAALKPYTTCPTNQPAASRPTSRPTRGRANRSSTRTPELIVPTGPELQPSTSTEQPG 860 870 880 890 900 910 390 400 410 420 430 440 mKIAA0 IPKLTSQVTEGRVQMPEPLLTGPEIQSPTSTEQSVTPDRKPRATRGRPSKSPNKTPEPLI ::.:::::::::.. gi|737 IPNLTSQVTEGRAH---------------------------------------------- 920 450 460 470 480 490 500 mKIAA0 STGPELQPPTSIEQPVIPKPTSRVTRGRPRKSSVRTPESVVSTGPELQPLTSIEQPVIPE ..:: :: ::. gi|737 ------------------------------STSVNMPE-----------------PVL-- 930 510 520 530 540 550 560 mKIAA0 PRATRGRPSKSSIKTPESVVPTGPELQPLTSAKQPVTPNLTSRASRGRSSKSIRTPEPVV :::: ::::::.: :: ::. :: gi|737 ---------------------TGPEAQPLTSAEQSVTSNLNPRA---------------- 940 950 570 580 590 600 610 620 mKIAA0 QTGPEFHPSTSTEQPDTREPSSQARTRRSAVKTPEASVPTTPELQPFTSKKQPAPKPTAL gi|737 ------------------------------------------------------------ 630 640 650 660 670 680 mKIAA0 VTQGRTYKPSTEDCESVGPVAPDFEPSTSTDHLVTPKVTDQSLTLQSSPLSASPVSSTPD gi|737 ------------------------------------------------------------ 690 700 710 720 730 740 mKIAA0 LKPPVPIAQPVTPEPIPQANHQRKRRAAGKQGSRTVPLGHKSYSALSEPEPQSSASQSSG ::.: ::.::..:::.:::.:::::::.:.: ::::. .::::::::::::: gi|737 --------QPLTLEPVPQTSHQRRRRATGKQGSRTAPVGPKSYSTPAEPEPQSSASQSSG 960 970 980 990 1000 1010 750 760 770 780 790 800 mKIAA0 ASEADSPRQKRPRRQASQKTVVIKEE-PVETEVKEEPQETAIPTPEKRKRDHAEEVTQGK :::::::.:::::::..:::::.::: : : .::::::::::::: ::::: :: :::. gi|737 ASEADSPHQKRPRRQVTQKTVVVKEEDPGEIQVKEEPQETAIPTPGKRKRDPAEGETQGN 1020 1030 1040 1050 1060 1070 810 820 830 840 850 860 mKIAA0 PTRSRRTKPNQETA-PKVLFTGVMDSRGERAVLALGGSLASSVNEASHLVTDRIRRTVKF ::::::::::::.: ::::::::.:::::::::::::::::::::::::::::::::::: gi|737 PTRSRRTKPNQEAAAPKVLFTGVVDSRGERAVLALGGSLASSVNEASHLVTDRIRRTVKF 1080 1090 1100 1110 1120 1130 870 880 890 900 910 920 mKIAA0 LCALGKGIPILSLNWLYQSRKAGCFLPPDDYLVTDPEQEKNFSFSLRDSLCRARERRLLE :::.:::::::::::::::::::::::::::::::::::::::::::::: ::::::::: gi|737 LCAVGKGIPILSLNWLYQSRKAGCFLPPDDYLVTDPEQEKNFSFSLRDSLSRARERRLLE 1140 1150 1160 1170 1180 1190 930 940 950 960 970 980 mKIAA0 DYEIHVTPGVQPPPPQMGEIISCCGGTFLPSMPHSYKLHRVIITCTEDLPRCAIPSRLGL ::::::::::::::::::::::::::: :::::::::::::.:::::::::::: ::::: gi|737 DYEIHVTPGVQPPPPQMGEIISCCGGTVLPSMPHSYKLHRVVITCTEDLPRCAIASRLGL 1200 1210 1220 1230 1240 1250 990 1000 1010 mKIAA0 PLLSPEFLLTGVLKQEATPEAFVLSNLEMSST ::::::::::::::::::::::::::::: gi|737 PLLSPEFLLTGVLKQEATPEAFVLSNLEM 1260 1270 >>gi|55250595|gb|AAH85955.1| Mdc1 protein [Rattus norveg (1336 aa) initn: 2661 init1: 1275 opt: 2034 Z-score: 1602.8 bits: 308.5 E(): 1.4e-80 Smith-Waterman score: 2453; 50.343% identity (53.876% similar) in 1019 aa overlap (1-1012:742-1336) 10 20 30 mKIAA0 LSLQTPGADTLDVPWEVLATQPFCLREQSE ::: ::::::::::::::::::::::::.: gi|552 ESQHPGAVQSLEDEPTQVFPCLPQEPGPSHLSLPTPGADTLDVPWEVLATQPFCLREQTE 720 730 740 750 760 770 40 50 60 70 80 mKIAA0 TSE---LHEAHGSQPSLPREPPGHQHLVHTSPVHTELLRIEGREIQTVEKAMGIPKEMAD ::: ::::::::::: ::::::: : :: :::::::. ::.:::::::: gi|552 TSEPIDTHEAHGSQPSLPGEPPGHQHPVPTSLDHTELLRIDDREMQTVEKAMG------- 780 790 800 810 820 90 100 110 120 130 140 mKIAA0 RMTPEREPLEREIRGRTENSERDVIGEELIQGTKDREPKKVLARDSQRKEADKDLEGNRE gi|552 ------------------------------------------------------------ 150 160 170 180 190 200 mKIAA0 SLEVEIEMSKDSQKRERKVEKPEPKREWEPADLEVTPDRGVTEEGSHDQKGQIASLTLKP : gi|552 ----------------------------------------------H------------- 210 220 230 240 250 260 mKIAA0 GVGVKDLEGLASAPIITGSQADGGKGDPLSPGRQQRGRLSCQTTPAGKASRGDPEPPDHC :::: : :::: :::: :: gi|552 --------------------------------------LSCQMMPDGKASGDDPEPSDHR 830 840 270 280 290 300 310 320 mKIAA0 LFSSVPEAST--QSLLTSQSQKQSTPQPLFSTSSSEIPLPESLHTKPNVRPRRSSRMTPS ::: :::::. ::::::::::::::::.: :::::. :::.:::::::::::::::::: gi|552 LFSPVPEASASPQSLLTSQSQKQSTPQPMFPTSSSELALPETLHTKPNVRPRRSSRMTPS 850 860 870 880 890 900 330 340 350 360 370 380 mKIAA0 PHSSAALKPNTTCPTNQPAASRPTSRPTRGRANRSSTRTPELIVPVDPELQPSTSTEQPV ::::::::: :::::::::::::::::::::::::::::::::::. :::::::::::: gi|552 PHSSAALKPYTTCPTNQPAASRPTSRPTRGRANRSSTRTPELIVPTGPELQPSTSTEQPG 910 920 930 940 950 960 390 400 410 420 430 440 mKIAA0 IPKLTSQVTEGRVQMPEPLLTGPEIQSPTSTEQSVTPDRKPRATRGRPSKSPNKTPEPLI ::.:::::::::.. gi|552 IPNLTSQVTEGRAH---------------------------------------------- 970 980 450 460 470 480 490 500 mKIAA0 STGPELQPPTSIEQPVIPKPTSRVTRGRPRKSSVRTPESVVSTGPELQPLTSIEQPVIPE ..:: :: ::. gi|552 ------------------------------STSVNMPE-----------------PVL-- 990 510 520 530 540 550 560 mKIAA0 PRATRGRPSKSSIKTPESVVPTGPELQPLTSAKQPVTPNLTSRASRGRSSKSIRTPEPVV :::: ::::::.: :: ::. :: gi|552 ---------------------TGPEAQPLTSAEQSVTSNLNPRA---------------- 1000 1010 570 580 590 600 610 620 mKIAA0 QTGPEFHPSTSTEQPDTREPSSQARTRRSAVKTPEASVPTTPELQPFTSKKQPAPKPTAL gi|552 ------------------------------------------------------------ 630 640 650 660 670 680 mKIAA0 VTQGRTYKPSTEDCESVGPVAPDFEPSTSTDHLVTPKVTDQSLTLQSSPLSASPVSSTPD gi|552 ------------------------------------------------------------ 690 700 710 720 730 740 mKIAA0 LKPPVPIAQPVTPEPIPQANHQRKRRAAGKQGSRTVPLGHKSYSALSEPEPQSSASQSSG ::.: ::.::..:::.:::.:::::::.:.: ::::. .::::::::::::: gi|552 --------QPLTLEPVPQTSHQRRRRATGKQGSRTAPVGPKSYSTPAEPEPQSSASQSSG 1020 1030 1040 1050 1060 750 760 770 780 790 800 mKIAA0 ASEADSPRQKRPRRQASQKTVVIKEE-PVETEVKEEPQETAIPTPEKRKRDHAEEVTQGK :::::::.:::::::..:::::.::: : : .::::::::::::: ::::: :: :::. gi|552 ASEADSPHQKRPRRQVTQKTVVVKEEDPGEIQVKEEPQETAIPTPGKRKRDPAEGETQGN 1070 1080 1090 1100 1110 1120 810 820 830 840 850 860 mKIAA0 PTRSRRTKPNQETA-PKVLFTGVMDSRGERAVLALGGSLASSVNEASHLVTDRIRRTVKF ::::::::::::.: ::::::::.:::::::::::::::::::::::::::::::::::: gi|552 PTRSRRTKPNQEAAAPKVLFTGVVDSRGERAVLALGGSLASSVNEASHLVTDRIRRTVKF 1130 1140 1150 1160 1170 1180 870 880 890 900 910 920 mKIAA0 LCALGKGIPILSLNWLYQSRKAGCFLPPDDYLVTDPEQEKNFSFSLRDSLCRARERRLLE :::.:::::::::::::::::::::::::::::::::::::::::::::: ::::::::: gi|552 LCAVGKGIPILSLNWLYQSRKAGCFLPPDDYLVTDPEQEKNFSFSLRDSLSRARERRLLE 1190 1200 1210 1220 1230 1240 930 940 950 960 970 980 mKIAA0 DYEIHVTPGVQPPPPQMGEIISCCGGTFLPSMPHSYKLHRVIITCTEDLPRCAIPSRLGL ::::::::::::::::::::::::::: :::::::::::::.:::::::::::: ::::: gi|552 DYEIHVTPGVQPPPPQMGEIISCCGGTVLPSMPHSYKLHRVVITCTEDLPRCAIASRLGL 1250 1260 1270 1280 1290 1300 990 1000 1010 mKIAA0 PLLSPEFLLTGVLKQEATPEAFVLSNLEMSST ::::::::::::::::::::::::::::: gi|552 PLLSPEFLLTGVLKQEATPEAFVLSNLEM 1310 1320 1330 >>gi|109509686|ref|XP_001072849.1| PREDICTED: similar to (1337 aa) initn: 2489 init1: 1275 opt: 2003 Z-score: 1578.5 bits: 304.0 E(): 3.2e-79 Smith-Waterman score: 2278; 48.381% identity (52.404% similar) in 1019 aa overlap (1-1012:746-1337) 10 20 30 mKIAA0 LSLQTPGADTLDVPWEVLATQPFCLREQSE ::: ::::::::::::::::::::::::.: gi|109 ESQHPGAVQSLEDEPTQVFPCLPQEPGPSHLSLPTPGADTLDVPWEVLATQPFCLREQTE 720 730 740 750 760 770 40 50 60 70 80 mKIAA0 TSE---LHEAHGSQPSLPREPPGHQHLVHTSPVHTELLRIEGREIQTVEKAMGIPKEMAD ::: ::::::::::: ::::::: : :: :::::::. ::.:::::::: gi|109 TSEPIDTHEAHGSQPSLPGEPPGHQHPVPTSLDHTELLRIDDREMQTVEKAMG------- 780 790 800 810 820 90 100 110 120 130 140 mKIAA0 RMTPEREPLEREIRGRTENSERDVIGEELIQGTKDREPKKVLARDSQRKEADKDLEGNRE gi|109 ------------------------------------------------------------ 150 160 170 180 190 200 mKIAA0 SLEVEIEMSKDSQKRERKVEKPEPKREWEPADLEVTPDRGVTEEGSHDQKGQIASLTLKP : gi|109 ----------------------------------------------H------------- 210 220 230 240 250 260 mKIAA0 GVGVKDLEGLASAPIITGSQADGGKGDPLSPGRQQRGRLSCQTTPAGKASRGDPEPPDHC :::: : :::: :::: :: gi|109 --------------------------------------LSCQMMPDGKASGDDPEPSDHR 830 840 850 270 280 290 300 310 320 mKIAA0 LFSSVPEAST--QSLLTSQSQKQSTPQPLFSTSSSEIPLPESLHTKPNVRPRRSSRMTPS ::: :::::. ::::::::::::::::.: :::::. :::.:::::::::::::::::: gi|109 LFSPVPEASASPQSLLTSQSQKQSTPQPMFPTSSSELALPETLHTKPNVRPRRSSRMTPS 860 870 880 890 900 910 330 340 350 360 370 380 mKIAA0 PHSSAALKPNTTCPTNQPAASRPTSRPTRGRANRSSTRTPELIVPVDPELQPSTSTEQPV ::::::::: ::::: .:: .. : : .::. ::::. :::::::::::: gi|109 PHSSAALKPYTTCPT-KPACCFXANMFHMG--NFRATRSYTLIVPTGPELQPSTSTEQPG 920 930 940 950 960 390 400 410 420 430 440 mKIAA0 IPKLTSQVTEGRVQMPEPLLTGPEIQSPTSTEQSVTPDRKPRATRGRPSKSPNKTPEPLI ::.:::::::::.. gi|109 IPNLTSQVTEGRAH---------------------------------------------- 970 980 450 460 470 480 490 500 mKIAA0 STGPELQPPTSIEQPVIPKPTSRVTRGRPRKSSVRTPESVVSTGPELQPLTSIEQPVIPE ..:: :: ::. gi|109 ------------------------------STSVNMPE-----------------PVL-- 990 510 520 530 540 550 560 mKIAA0 PRATRGRPSKSSIKTPESVVPTGPELQPLTSAKQPVTPNLTSRASRGRSSKSIRTPEPVV :::: ::::::.: :: ::. :: gi|109 ---------------------TGPEAQPLTSAEQSVTSNLNPRA---------------- 1000 1010 570 580 590 600 610 620 mKIAA0 QTGPEFHPSTSTEQPDTREPSSQARTRRSAVKTPEASVPTTPELQPFTSKKQPAPKPTAL gi|109 ------------------------------------------------------------ 630 640 650 660 670 680 mKIAA0 VTQGRTYKPSTEDCESVGPVAPDFEPSTSTDHLVTPKVTDQSLTLQSSPLSASPVSSTPD gi|109 ------------------------------------------------------------ 690 700 710 720 730 740 mKIAA0 LKPPVPIAQPVTPEPIPQANHQRKRRAAGKQGSRTVPLGHKSYSALSEPEPQSSASQSSG ::.: ::.::..:::.:::.:::::::.:.: ::::. .::::::::::::: gi|109 --------QPLTLEPVPQTSHQRRRRATGKQGSRTAPVGPKSYSTPAEPEPQSSASQSSG 1020 1030 1040 1050 1060 750 760 770 780 790 800 mKIAA0 ASEADSPRQKRPRRQASQKTVVIKEE-PVETEVKEEPQETAIPTPEKRKRDHAEEVTQGK :::::::.:::::::..:::::.::: : : .::::::::::::: ::::: :: :::. gi|109 ASEADSPHQKRPRRQVTQKTVVVKEEDPGEIQVKEEPQETAIPTPGKRKRDPAEGETQGN 1070 1080 1090 1100 1110 1120 810 820 830 840 850 860 mKIAA0 PTRSRRTKPNQETA-PKVLFTGVMDSRGERAVLALGGSLASSVNEASHLVTDRIRRTVKF ::::::::::::.: ::::::::.:::::::::::::::::::::::::::::::::::: gi|109 PTRSRRTKPNQEAAAPKVLFTGVVDSRGERAVLALGGSLASSVNEASHLVTDRIRRTVKF 1130 1140 1150 1160 1170 1180 870 880 890 900 910 920 mKIAA0 LCALGKGIPILSLNWLYQSRKAGCFLPPDDYLVTDPEQEKNFSFSLRDSLCRARERRLLE :::.:::::::::::::::::::::::::::::::::::::::::::::: ::::::::: gi|109 LCAVGKGIPILSLNWLYQSRKAGCFLPPDDYLVTDPEQEKNFSFSLRDSLSRARERRLLE 1190 1200 1210 1220 1230 1240 930 940 950 960 970 980 mKIAA0 DYEIHVTPGVQPPPPQMGEIISCCGGTFLPSMPHSYKLHRVIITCTEDLPRCAIPSRLGL ::::::::::::::::::::::::::: :::::::::::::.:::::::::::: ::::: gi|109 DYEIHVTPGVQPPPPQMGEIISCCGGTVLPSMPHSYKLHRVVITCTEDLPRCAIASRLGL 1250 1260 1270 1280 1290 1300 990 1000 1010 mKIAA0 PLLSPEFLLTGVLKQEATPEAFVLSNLEMSST ::::::::::::::::::::::::::::: gi|109 PLLSPEFLLTGVLKQEATPEAFVLSNLEM 1310 1320 1330 >>gi|156914659|gb|AAI52557.1| MDC1 protein [Homo sapiens (1802 aa) initn: 1889 init1: 1162 opt: 1905 Z-score: 1499.9 bits: 289.9 E(): 7.7e-75 Smith-Waterman score: 3252; 52.732% identity (71.585% similar) in 1098 aa overlap (2-1015:736-1802) 10 20 30 mKIAA0 LSLQTPGADTLDVPWEVLATQPFCLREQSET :.:: : ::: :::::::::::::: :: gi|156 QGLEAVQSMEDEPTQAFMLTPPQELGPSHCSFQTTG--TLDEPWEVLATQPFCLRE-SED 710 720 730 740 750 760 40 50 60 70 80 mKIAA0 SELH------EAHGSQPSLPREPPGHQHLVHTSPVHTELLRIEGREIQTVEKAMGIPKEM :: . ::.: : :: :: :: :::::: . :.:: :::.:.:::::: gi|156 SETQPFDTHLEAYGPCLSPPRAIPGDQH--PESPVHTEPMGIQGRGRQTVDKVMGIPKET 770 780 790 800 810 820 90 100 110 120 130 140 mKIAA0 ADRMTPEREPLEREIRGRTENSERDVIGEE-LIQGTKDREPKKVLARDSQRKEADKDLEG :.:. ::: ::::: . . . :: ::: : .: .::: :..::::.::.:.::. :. gi|156 AERVGPERGPLERETEKLLPERQTDVTGEEELTKGKQDREQKQLLARDTQRQESDKNGES 830 840 850 860 870 880 150 160 170 180 mKIAA0 -----NRESLEVEIEMSKDSQKR------------ERKVEKPEPKREWEPADLEV-TP-- .::::.:::: :.. :.. ::.::.: .:: .::.:: .: gi|156 ASPERDRESLKVEIETSEEIQEKQVQKQTLPSKAFEREVERPVANRECDPAELEEKVPKV 890 900 910 920 930 940 190 200 210 220 230 mKIAA0 ------DRGVTEEGSHDQKGQIASLTLKPGVGVKDLEGLASAPIITGSQADGGKGDPLSP .:: : ::.::::: .: : .::::. :: : .:::. .:::. ::.:.:.:: gi|156 ILERDTQRGEPEGGSQDQKGQASSPTPEPGVGAGDLPGPTSAPVPSGSQS-GGRGSPVSP 950 960 970 980 990 240 250 260 270 280 mKIAA0 GRQQRGRLSCQTTPAGKASR---------GDPEPPDHCLFSSVPEAST--QSLLTSQSQK :.:.: :.:. :: :::: :: : :: :: .:::: . :. :.::::: gi|156 RRHQKGLLNCKMPPAEKASRIRAAEKVSRGDQESPDACLPPAVPEAPAPPQKPLNSQSQK 1000 1010 1020 1030 1040 1050 290 300 310 320 mKIAA0 QSTPQPLFST---------------SSSEIP-LP-----ESLHTKPNVRPRRSSRMTPSP . .: ::.: .:.: : : : .: ::..: :.:::::: : gi|156 HLAPPPLLSPLLPSIKPTVRKTRQDGSQEAPEAPLSSELEPFHPKPKIRTRKSSRMTPFP 1060 1070 1080 1090 1100 1110 330 340 350 360 370 380 mKIAA0 HSSAALKPNTTCPTNQPAASRPTSRPTRGRANRSSTRTPELIVPVDPELQPSTSTEQPVI .::: : . . :.::.. .:::. ::::.::::..::: .::. :::::::::.::: gi|156 ATSAAPKLEPSTSTDQPVTPEPTSQATRGRTNRSSVKTPETVVPTAPELQPSTSTDQPVT 1120 1130 1140 1150 1160 1170 390 400 410 420 430 440 mKIAA0 PKLTSQVTEGR-----VQMPEPLL-TGPEIQSPTSTEQSVTPDRKPRATRGRPSKSPNKT :. :::.:.:: :. :: .. :.::.:. .::.: :: . :.:::: ..: :: gi|156 PEPTSQATRGRTDRSSVKTPETVVPTAPELQASASTDQPVTSEPTSRTTRGRKNRSSVKT 1180 1190 1200 1210 1220 1230 450 460 470 480 490 500 mKIAA0 PEPLISTGPELQPPTSIEQPVIPKPTSRVTRGRPRKSSVRTPESVVSTGPELQPLTSIEQ :: .. ..:::::::: ..:: :.::::.:::: .:::.::::.: .::::: :: .: gi|156 PETVVPAAPELQPPTSTDRPVTPEPTSRATRGRTNRSSVKTPESIVPIAPELQPSTSRNQ 1240 1250 1260 1270 1280 1290 510 520 530 540 550 mKIAA0 PVIPEP--RATRGRPSKSSIKTPESVVPTGPELQPLTSAKQPVTPNLTSRASRGRSSKS- : ::: :::: : ..::.:::: ::::.:: .: ::. :::::.:::::.: ....: gi|156 LVTPEPTSRATRCRTNRSSVKTPEPVVPTAPEPHPTTSTDQPVTPKLTSRATRRKTNRSS 1300 1310 1320 1330 1340 1350 560 570 580 590 600 610 mKIAA0 IRTPEPVVQTGPEFHPSTSTEQ---PDTREPSSQARTRRSAVKTPEASVPTTPELQ-PFT ..::.:: .. ...: : :.: :.. ..:..: ::.. . ::::::.: : : gi|156 VKTPKPVEPAASDLEPFTPTDQSVTPEAIAQGGQSKTLRSST-VRAMPVPTTPEFQSPVT 1360 1370 1380 1390 1400 1410 620 630 640 650 660 670 mKIAA0 SKKQPAPKPTALVTQGRTYKPSTEDCESVGPVAP-DFEPSTSTDHLVTPKVTDQSLTLQS . . .:.: .:: : . . . .:: : .: .. . :: . . gi|156 TDQPISPEP---ITQPSCIKRQRAAGNPGSLAAPIDHKPCSAP---LEPKSQASRNQRWG 1420 1430 1440 1450 1460 1470 680 690 700 710 720 730 mKIAA0 SPLSASPVSSTPDLKPPVPIAQPVTPEPIPQANHQRKRRAAGKQGSRTVPLGHKSYSALS . .: ... :. : . . :: .:.. .: . ::. :: .: gi|156 AVRAAESLTAIPE-----PASPQLLETPI-HASQIQKVEPAGR--SRFTP---------- 1480 1490 1500 1510 740 750 760 770 780 mKIAA0 EPEPQSSASQSSGASEADSP-RQKRPRR-QASQKTVVIKEEPVETEVKEEPQETAI-PTP : .:..: :.. . . ::: .::.:.: ..:::::.:::: .: : .: .. : : gi|156 ELQPKASQSRKRSLATMDSPPHQKQPQRGEVSQKTVIIKEEEEDTAEKPGKEEDVVTPKP 1520 1530 1540 1550 1560 1570 790 800 810 820 830 840 mKIAA0 EKRKRDHAEEVTQGKPTRS-RRTKPNQE-TAPKVLFTGVMDSRGERAVLALGGSLASSVN :::::.::: . :.:: :::: ::: ::::::::::.:.::::::::::::::.:. gi|156 GKRKRDQAEEEPNRIPSRSLRRTKLNQESTAPKVLFTGVVDARGERAVLALGGSLAGSAA 1580 1590 1600 1610 1620 1630 850 860 870 880 890 900 mKIAA0 EASHLVTDRIRRTVKFLCALGKGIPILSLNWLYQSRKAGCFLPPDDYLVTDPEQEKNFSF :::::::::::::::::::::.:::::::.::.:::::: :::::.:.::::::::::.: gi|156 EASHLVTDRIRRTVKFLCALGRGIPILSLDWLHQSRKAGFFLPPDEYVVTDPEQEKNFGF 1640 1650 1660 1670 1680 1690 910 920 930 940 950 960 mKIAA0 SLRDSLCRARERRLLEDYEIHVTPGVQPPPPQMGEIISCCGGTFLPSMPHSYKLHRVIIT ::.:.: ::::::::: :::.::::::::::::::::::::::.:::::.::: .::.:: gi|156 SLQDALSRARERRLLEGYEIYVTPGVQPPPPQMGEIISCCGGTYLPSMPRSYKPQRVVIT 1700 1710 1720 1730 1740 1750 970 980 990 1000 1010 mKIAA0 CTEDLPRCAIPSRLGLPLLSPEFLLTGVLKQEATPEAFVLSNLEMSST : .:.:.:.:: :.::::::::::::::::::: ::::::: :::::: gi|156 CPQDFPHCSIPLRVGLPLLSPEFLLTGVLKQEAKPEAFVLSPLEMSST 1760 1770 1780 1790 1800 1015 residues in 1 query sequences 2727779818 residues in 7921681 library sequences Tcomplib [34.26] (2 proc) start: Fri Mar 13 05:15:41 2009 done: Fri Mar 13 05:24:46 2009 Total Scan time: 1187.220 Total Display time: 0.650 Function used was FASTA [version 34.26.5 April 26, 2007]