FASTA searches a protein or DNA sequence data bank
 version 3.4t11 Apr 17, 2002
Please cite:
 W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

 ../query/mKIAA1298.ptfa, 1035 aa
 vs ./tmplib.26680 library

1767982 residues in  2168 sequences
  Expectation_n fit: rho(ln(x))= 8.5019+/-0.00674; mu= 0.5960+/- 0.447
 mean_var=230.1619+/-55.859, 0's: 0 Z-trim: 3  B-trim: 110 in 1/35
 Lambda= 0.0845

FASTA (3.45 Mar 2002) function [optimized, BL50 matrix (15:-5)] ktup: 2
 join: 39, opt: 27, open/ext: -10/-2, width:  16
The best scores are:                                       opt bits E(2168)
mKIAA1725  ( 1053 res)   mbg18375                  (1053)  488   73 2.3e-13


>>mKIAA1725  ( 1053 res)   mbg18375                       (1053 aa)
 initn: 705 init1: 488 opt: 488  Z-score: 332.3  bits: 73.1 E(): 2.3e-13
Smith-Waterman score: 488;  71.277% identity (71.277% ungapped) in 94 aa overlap (365-458:1-94)

          340       350       360       370       380       390    
mKIAA1 TREIDNFFPGLFAYHNIRVYDEETTDLLAHWNEAYHFINKAKRNHSKCLVHCKMGVSRSA
                                     ::..:.::.:::.. :::::::::::::::
mKIAA1                               WNDTYKFISKAKKHGSKCLVHCKMGVSRSA
                                             10        20        30

          400       410       420       430       440       450    
mKIAA1 STVIAYAMKEFGWPLEKAYNYVKQKRSITRPNAGFMRQLSEYEGILDASKQRHNKLWRQQ
       ::::::::::.:: :..::.:::..:..:.:: .::::: ::.::: :::::::::::..
mKIAA1 STVIAYAMKEYGWNLDRAYDYVKERRTVTKPNPSFMRQLEEYQGILLASKQRHNKLWRSH
               40        50        60        70        80        90

          460       470       480       490       500       510    
mKIAA1 PTDDTIAEPSEFLPETLDGALDAQLPCLDDTTHPGLPRSLAPGGPALPCCFRRLSDPLLL
         .:                                                        
mKIAA1 SDSDLSDHHEPICKPGLELNKKEMTTSADQIAEVKTVENLAAMPTVFMEHVVPQDANQKG
              100       110       120       130       140       150




1035 residues in 1 query   sequences
1767982 residues in 2168 library sequences
 Scomplib [34t11]
 start: Mon Mar 27 10:40:11 2006 done: Mon Mar 27 10:40:12 2006
 Scan time:  1.070 Display time:  0.030

Function used was FASTA [version 3.4t11 Apr 17, 2002]