FASTA searches a protein or DNA sequence data bank
 version 3.4t11 Apr 17, 2002
Please cite:
 W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

 ../query/mKIAA1729.ptfa, 976 aa
 vs ./tmplib.26680 library

1768041 residues in  2168 sequences
  Expectation_n fit: rho(ln(x))= 7.3655+/-0.00656; mu= 7.4380+/- 0.438
 mean_var=290.1289+/-72.311, 0's: 0 Z-trim: 9  B-trim: 0 in 0/36
 Lambda= 0.0753

FASTA (3.45 Mar 2002) function [optimized, BL50 matrix (15:-5)] ktup: 2
 join: 39, opt: 27, open/ext: -10/-2, width:  16
The best scores are:                                       opt bits E(2168)
mKIAA0335  ( 372 res)   mkg05239                   ( 372)  273   43 6.7e-05


>>mKIAA0335  ( 372 res)   mkg05239                        (372 aa)
 initn: 253 init1: 253 opt: 273  Z-score: 180.3  bits: 43.4 E(): 6.7e-05
Smith-Waterman score: 290;  26.724% identity (31.525% ungapped) in 348 aa overlap (592-917:52-368)

             570       580       590       600       610        620
mKIAA1 RRKIAQLIESCGKPSSLSANSAQRRSIGQAPKLTSKATPKAIQEMSVSLTGPG-PTPGPS
                                     :. :.   :: .:  . .   :  :. .:.
mKIAA0 VKQQNENLPKASLYTLMPDGKQAVFFKCVMPNNTKLLKPKLVQSSTYQHIQPKRPAGAPQ
              30        40        50        60        70        80 

                      630       640       650       660       670  
mKIAA1 ------VGPL--QKPPNEDSITGSRQLVPQQVCPQFISANDGKMENRVTRKTPVATPVLI
              .:.  ..  :. : ..: .   ... :.  ...  . : ...:.   : :::.
mKIAA0 KILVKIFNPVLSMSAFNNLSASNSASSFQKEIVPSKPTVHGEQKEPETSRN---ALPVLV
              90       100       110       120       130           

            680       690           700        710       720       
mKIAA1 PKGAVLRVLNSSEDAHIIEATC----DTPVSIPC-SEAQLAGTLPFCPMKQTGSGSQPLT
        .:    .. ..: .:   ..:    . :: :   ::...      : .... .  .  :
mKIAA0 -HG----LMPANETVHSSTTACPGSSEEPVYISERSETRVLRGKANCAVERNFNKRK--T
       140           150       160       170       180       190   

       730       740       750       760       770       780       
mKIAA1 CRSGPADMSPGLETSLRPKSRKEDTICSATAKKMVPVYSTAPGSSDSIRQGRPVSRNLTV
       :..  : ..  .. . .    ...  :.   .:..  :.  :      :.   ..:    
mKIAA0 CKNKFAKIKTRIDQDSETAFVSRNRSCK---RKYIDNYQEPP------RKKSTLNR----
             200       210          220       230                  

       790       800       810       820       830       840       
mKIAA1 SKNKTKQVNSTKKKNKMQANPGRYFKDPPSFFQVARQLRLIAAKPDQLIKCPRRNQPVIV
          : :.  :..    .:   :  :. :    . .: :::.  .  ::.:::::::::.:
mKIAA0 ---KGKERASAED---VQEAFG--FSRPRLPKDSSRTLRLFPFSSKQLVKCPRRNQPVVV
         240          250         260       270       280       290

       850       860       870       880        890       900      
mKIAA1 LNHPDVDSPEVTNVMKVINKYKGNVLKVVLSERT-RCQLGVRRYHMRLTYQNVAE-----
       :::::.:.:::  :::.: :..:.:::: ::. :    :       . ::.. ..     
mKIAA0 LNHPDADTPEVERVMKTIAKFNGHVLKVSLSQTTINALLKPVSNTSETTYNDFSKRQKML
              300       310       320       330       340       350

               910       920       930       940       950         
mKIAA1 --TNHMKRQMMLKMKLKKVHKNNYQVVGSMPDDPAQCVFKCWFCGRLYEDQEEWMSHGQR
         .: .:....::. :::                                          
mKIAA0 KPVNSVKERFVLKLTLKKNKQK                                      
              360       370                                        




976 residues in 1 query   sequences
1768041 residues in 2168 library sequences
 Scomplib [34t11]
 start: Mon Mar 27 10:51:50 2006 done: Mon Mar 27 10:51:51 2006
 Scan time:  1.040 Display time:  0.020

Function used was FASTA [version 3.4t11 Apr 17, 2002]