# /usr/local/bin/fasta34_t -T 4 -b50 -d10 -E0.01 -H -O./tmp/mpf01345.fasta.nr -Q ../query/mKIAA0208.ptfa /cdna4/rodent/rouge_util/new.rouge/nfasta/nr 2 FASTA searches a protein or DNA sequence data bank version 34.26.5 April 26, 2007 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 mKIAA0208, 356 aa vs /cdna4/rodent/rouge_util/new.rouge/nfasta/nr library 2727779818 residues in 7921681 sequences statistics sampled from 60000 to 7909537 sequences Expectation_n fit: rho(ln(x))= 6.0130+/-0.000197; mu= 6.8090+/- 0.011 mean_var=109.7207+/-20.883, 0's: 23 Z-trim: 47 B-trim: 89 in 2/64 Lambda= 0.122442 FASTA (3.5 Sept 2006) function [optimized, BL50 matrix (15:-5)] ktup: 2 join: 37, opt: 25, open/ext: -10/-2, width: 16 The best scores are: opt bits E(7921681) gi|149019848|gb|EDL77996.1| dishevelled 3, dsh hom ( 668) 292 62.2 3.7e-07 gi|149442699|ref|XP_001520712.1| PREDICTED: simila ( 685) 292 62.2 3.7e-07 gi|148665154|gb|EDK97570.1| dishevelled 3, dsh hom ( 716) 292 62.2 3.8e-07 gi|6919873|sp|Q61062.1|DVL3_MOUSE RecName: Full=Se ( 716) 292 62.2 3.8e-07 gi|148665153|gb|EDK97569.1| dishevelled 3, dsh hom ( 762) 292 62.2 4e-07 gi|109042999|ref|XP_001094101.1| PREDICTED: simila ( 740) 287 61.3 7.3e-07 gi|119598699|gb|EAW78293.1| dishevelled, dsh homol ( 559) 282 60.3 1.1e-06 gi|17390681|gb|AAH18289.1|AAH18289 Unknown (protei ( 608) 282 60.4 1.2e-06 gi|114590661|ref|XP_001137844.1| PREDICTED: hypoth ( 616) 282 60.4 1.2e-06 gi|114590657|ref|XP_001137348.1| PREDICTED: hypoth ( 692) 282 60.4 1.3e-06 gi|114590655|ref|XP_001137679.1| PREDICTED: hypoth ( 694) 282 60.4 1.3e-06 gi|194388146|dbj|BAG65457.1| unnamed protein produ ( 699) 282 60.4 1.3e-06 gi|114590659|ref|XP_001137271.1| PREDICTED: hypoth ( 713) 282 60.4 1.3e-06 gi|2612833|gb|AAB84228.1| dishevelled 3 [Homo sapi ( 716) 282 60.4 1.3e-06 gi|2291010|gb|AAB65244.1| dishevelled 3 [Homo sapi ( 716) 282 60.4 1.3e-06 gi|21595561|gb|AAH32459.1| Dishevelled, dsh homolo ( 716) 282 60.4 1.3e-06 gi|6919875|sp|Q92997.2|DVL3_HUMAN RecName: Full=Se ( 716) 282 60.4 1.3e-06 gi|114590653|ref|XP_516908.2| PREDICTED: hypotheti ( 718) 282 60.4 1.3e-06 gi|74003282|ref|XP_857765.1| PREDICTED: similar to ( 721) 278 59.7 2.1e-06 gi|74003276|ref|XP_857640.1| PREDICTED: similar to ( 725) 278 59.7 2.2e-06 gi|74003280|ref|XP_857721.1| PREDICTED: similar to ( 692) 277 59.5 2.4e-06 gi|74003274|ref|XP_535822.2| PREDICTED: similar to ( 716) 277 59.5 2.4e-06 gi|1277023|gb|AAB47447.1| cytoplasmic phosphoprote ( 716) 276 59.4 2.7e-06 gi|194664149|ref|XP_001788530.1| PREDICTED: simila ( 967) 277 59.7 3e-06 gi|224060699|ref|XP_002191918.1| PREDICTED: simila ( 640) 253 55.3 4.2e-05 gi|118095209|ref|XP_422756.2| PREDICTED: hypotheti ( 833) 253 55.4 5.1e-05 gi|215275222|sp|B1WAP7.1|DVL3_XENTR RecName: Full= ( 713) 245 53.9 0.00012 gi|82200432|sp|Q6DKE2.1|DVL3_XENLA RecName: Full=S ( 717) 242 53.4 0.00018 gi|193893194|gb|EDV92060.1| GH24704 [Drosophila gr ( 692) 212 48.0 0.0067 >>gi|149019848|gb|EDL77996.1| dishevelled 3, dsh homolog (668 aa) initn: 292 init1: 292 opt: 292 Z-score: 284.9 bits: 62.2 E(): 3.7e-07 Smith-Waterman score: 292; 97.872% identity (100.000% similar) in 47 aa overlap (269-315:107-153) 240 250 260 270 280 290 mKIAA0 GPCSGPGLPASYPLFPALSLVWTQLPISLAAARLNGTTKGERRREPGGYDSSSTLMSSEL :::::::::::::::::::::::::::::: gi|149 SQENLDNDTETDSLVSAQRERPRRRDGPEHAARLNGTTKGERRREPGGYDSSSTLMSSEL 80 90 100 110 120 130 300 310 320 330 340 350 mKIAA0 ETTSFFDSDEDDSTSRWGLIFLGTGMGVRREVTNEAAGSSPLVGCGHCEGTRALLCLL ::::::::::::::::. gi|149 ETTSFFDSDEDDSTSRFSSSTEQSSASRLMRRHKRRRRKQKVSRIERSSSFSSITDSTMS 140 150 160 170 180 190 >>gi|149442699|ref|XP_001520712.1| PREDICTED: similar to (685 aa) initn: 265 init1: 265 opt: 292 Z-score: 284.8 bits: 62.2 E(): 3.7e-07 Smith-Waterman score: 301; 39.500% identity (56.500% similar) in 200 aa overlap (142-315:72-265) 120 130 140 150 160 170 mKIAA0 QSCHLRWNAQEALGTLDPPPSSKCVLKVGMAHEQRAAQFNP-GLGKGAPSLLSSPPSPLY :. :.:: .: ::: : : . :: : gi|149 NGGSRGLAGVEARARPPDLAAAPGMWESQGAKPIRSAQPEPPGLG-GELSPVRSPRLPPP 50 60 70 80 90 100 180 190 200 210 220 mKIAA0 PLALMLVGAARRIWTMTRRPTPW----CLPNESGPDGGM-----ARSTVCMPTSSSSRQI : : . : . . ::. : . .: . :.. .: . . .. .:. gi|149 PR-----GRSCRKPSASPRPAAWLEVGVVKEEISDDNARLPCFNGRVVSWLVSAEGSHPE 110 120 130 140 150 230 240 250 260 mKIAA0 PASF---------PPLYPTSRVMAMPGPCSGPGL-----PASYPLFPALSLVWTQLPISL :.: ::. :. . : : . :... : :: .:: : gi|149 PGSVGPDNPPELPPPMERTGGIGDSRPPSFHPHVATRRNPTDHSLSSFLSPRHPRLPRSR 160 170 180 190 200 210 270 280 290 300 310 320 mKIAA0 --AAARLNGTTKGERRREPGGYDSSSTLMSSELETTSFFDSDEDDSTSRWGLIFLGTGMG .. :.:::.::::::::::::::::::::::::::::::::::::::. gi|149 LPGVPRVNGTAKGERRREPGGYDSSSTLMSSELETTSFFDSDEDDSTSRFSSSTEQSSAS 220 230 240 250 260 270 330 340 350 mKIAA0 VRREVTNEAAGSSPLVGCGHCEGTRALLCLL gi|149 RLMRRHKRRRRKQKVPRIERSSSFSSITDSTMSLNIITVTLNMEKYNFLGISIVGQSNER 280 290 300 310 320 330 >>gi|148665154|gb|EDK97570.1| dishevelled 3, dsh homolog (716 aa) initn: 292 init1: 292 opt: 292 Z-score: 284.5 bits: 62.2 E(): 3.8e-07 Smith-Waterman score: 292; 97.872% identity (100.000% similar) in 47 aa overlap (269-315:155-201) 240 250 260 270 280 290 mKIAA0 GPCSGPGLPASYPLFPALSLVWTQLPISLAAARLNGTTKGERRREPGGYDSSSTLMSSEL :::::::::::::::::::::::::::::: gi|148 SQENLDNDTETDSLVSAQRERPRRRDGPEHAARLNGTTKGERRREPGGYDSSSTLMSSEL 130 140 150 160 170 180 300 310 320 330 340 350 mKIAA0 ETTSFFDSDEDDSTSRWGLIFLGTGMGVRREVTNEAAGSSPLVGCGHCEGTRALLCLL ::::::::::::::::. gi|148 ETTSFFDSDEDDSTSRFSSSTEQSSASRLMRRHKRRRRKQKVSRIERSSSFSSITDSTMS 190 200 210 220 230 240 >>gi|6919873|sp|Q61062.1|DVL3_MOUSE RecName: Full=Segmen (716 aa) initn: 292 init1: 292 opt: 292 Z-score: 284.5 bits: 62.2 E(): 3.8e-07 Smith-Waterman score: 292; 97.872% identity (100.000% similar) in 47 aa overlap (269-315:155-201) 240 250 260 270 280 290 mKIAA0 GPCSGPGLPASYPLFPALSLVWTQLPISLAAARLNGTTKGERRREPGGYDSSSTLMSSEL :::::::::::::::::::::::::::::: gi|691 SQENLDNDTETDSLVSAQRERPRRRDGPEHAARLNGTTKGERRREPGGYDSSSTLMSSEL 130 140 150 160 170 180 300 310 320 330 340 350 mKIAA0 ETTSFFDSDEDDSTSRWGLIFLGTGMGVRREVTNEAAGSSPLVGCGHCEGTRALLCLL ::::::::::::::::. gi|691 ETTSFFDSDEDDSTSRFSSSTEQSSASRLMRRHKRRRRKQKVSRIERSSSFSSITDSTMS 190 200 210 220 230 240 >>gi|148665153|gb|EDK97569.1| dishevelled 3, dsh homolog (762 aa) initn: 292 init1: 292 opt: 292 Z-score: 284.2 bits: 62.2 E(): 4e-07 Smith-Waterman score: 292; 97.872% identity (100.000% similar) in 47 aa overlap (269-315:199-245) 240 250 260 270 280 290 mKIAA0 GPCSGPGLPASYPLFPALSLVWTQLPISLAAARLNGTTKGERRREPGGYDSSSTLMSSEL :::::::::::::::::::::::::::::: gi|148 SQENLDNDTETDSLVSAQRERPRRRDGPEHAARLNGTTKGERRREPGGYDSSSTLMSSEL 170 180 190 200 210 220 300 310 320 330 340 350 mKIAA0 ETTSFFDSDEDDSTSRWGLIFLGTGMGVRREVTNEAAGSSPLVGCGHCEGTRALLCLL ::::::::::::::::. gi|148 ETTSFFDSDEDDSTSRFSSSTEQSSASRLMRRHKRRRRKQKVSRIERSSSFSSITDSTMS 230 240 250 260 270 280 >>gi|109042999|ref|XP_001094101.1| PREDICTED: similar to (740 aa) initn: 287 init1: 287 opt: 287 Z-score: 279.6 bits: 61.3 E(): 7.3e-07 Smith-Waterman score: 287; 95.745% identity (100.000% similar) in 47 aa overlap (269-315:179-225) 240 250 260 270 280 290 mKIAA0 GPCSGPGLPASYPLFPALSLVWTQLPISLAAARLNGTTKGERRREPGGYDSSSTLMSSEL :::::::.:::::::::::::::::::::: gi|109 SQENLDNDTETDSLVSAQRERPRRRDGPEHAARLNGTAKGERRREPGGYDSSSTLMSSEL 150 160 170 180 190 200 300 310 320 330 340 350 mKIAA0 ETTSFFDSDEDDSTSRWGLIFLGTGMGVRREVTNEAAGSSPLVGCGHCEGTRALLCLL ::::::::::::::::. gi|109 ETTSFFDSDEDDSTSRFSSSTEQSSASRLMRRHKRRRRKQKVSRIERSSSFSSITDSTMS 210 220 230 240 250 260 >>gi|119598699|gb|EAW78293.1| dishevelled, dsh homolog 3 (559 aa) initn: 277 init1: 277 opt: 282 Z-score: 276.4 bits: 60.3 E(): 1.1e-06 Smith-Waterman score: 282; 93.617% identity (100.000% similar) in 47 aa overlap (269-315:155-201) 240 250 260 270 280 290 mKIAA0 GPCSGPGLPASYPLFPALSLVWTQLPISLAAARLNGTTKGERRREPGGYDSSSTLMSSEL :.:::::.:::::::::::::::::::::: gi|119 SQENLDNDTETDSLVSAQRERPRRRDGPEHATRLNGTAKGERRREPGGYDSSSTLMSSEL 130 140 150 160 170 180 300 310 320 330 340 350 mKIAA0 ETTSFFDSDEDDSTSRWGLIFLGTGMGVRREVTNEAAGSSPLVGCGHCEGTRALLCLL ::::::::::::::::. gi|119 ETTSFFDSDEDDSTSRFSSSTEQSSASRLMRRHKRRRRKQKVSRIERSSSFSSITDSTMS 190 200 210 220 230 240 >>gi|17390681|gb|AAH18289.1|AAH18289 Unknown (protein fo (608 aa) initn: 277 init1: 277 opt: 282 Z-score: 275.9 bits: 60.4 E(): 1.2e-06 Smith-Waterman score: 282; 93.617% identity (100.000% similar) in 47 aa overlap (269-315:47-93) 240 250 260 270 280 290 mKIAA0 GPCSGPGLPASYPLFPALSLVWTQLPISLAAARLNGTTKGERRREPGGYDSSSTLMSSEL :.:::::.:::::::::::::::::::::: gi|173 SQENLDNDTETDSLVSAQRERPRRRDGPEHATRLNGTAKGERRREPGGYDSSSTLMSSEL 20 30 40 50 60 70 300 310 320 330 340 350 mKIAA0 ETTSFFDSDEDDSTSRWGLIFLGTGMGVRREVTNEAAGSSPLVGCGHCEGTRALLCLL ::::::::::::::::. gi|173 ETTSFFDSDEDDSTSRFSSSTEQSSASRLMRRHKRRRRKQKVSRIERSSSFSSITDSTMS 80 90 100 110 120 130 >>gi|114590661|ref|XP_001137844.1| PREDICTED: hypothetic (616 aa) initn: 277 init1: 277 opt: 282 Z-score: 275.8 bits: 60.4 E(): 1.2e-06 Smith-Waterman score: 282; 93.617% identity (100.000% similar) in 47 aa overlap (269-315:53-99) 240 250 260 270 280 290 mKIAA0 GPCSGPGLPASYPLFPALSLVWTQLPISLAAARLNGTTKGERRREPGGYDSSSTLMSSEL :.:::::.:::::::::::::::::::::: gi|114 SQENLDNDTETDSLVSAQRERPRRRDGPEHATRLNGTAKGERRREPGGYDSSSTLMSSEL 30 40 50 60 70 80 300 310 320 330 340 350 mKIAA0 ETTSFFDSDEDDSTSRWGLIFLGTGMGVRREVTNEAAGSSPLVGCGHCEGTRALLCLL ::::::::::::::::. gi|114 ETTSFFDSDEDDSTSRFSSSTEQSSASRLMRRHKRRRRKQKVSRIERSSSFSSITDSTMS 90 100 110 120 130 140 >>gi|114590657|ref|XP_001137348.1| PREDICTED: hypothetic (692 aa) initn: 277 init1: 277 opt: 282 Z-score: 275.2 bits: 60.4 E(): 1.3e-06 Smith-Waterman score: 282; 93.617% identity (100.000% similar) in 47 aa overlap (269-315:155-201) 240 250 260 270 280 290 mKIAA0 GPCSGPGLPASYPLFPALSLVWTQLPISLAAARLNGTTKGERRREPGGYDSSSTLMSSEL :.:::::.:::::::::::::::::::::: gi|114 SQENLDNDTETDSLVSAQRERPRRRDGPEHATRLNGTAKGERRREPGGYDSSSTLMSSEL 130 140 150 160 170 180 300 310 320 330 340 350 mKIAA0 ETTSFFDSDEDDSTSRWGLIFLGTGMGVRREVTNEAAGSSPLVGCGHCEGTRALLCLL ::::::::::::::::. gi|114 ETTSFFDSDEDDSTSRFSSSTEQSSASRLMRRHKRRRRKQKVSRIERSSSFSSITDSTMS 190 200 210 220 230 240 356 residues in 1 query sequences 2727779818 residues in 7921681 library sequences Tcomplib [34.26] (2 proc) start: Fri Mar 13 10:19:25 2009 done: Fri Mar 13 10:25:34 2009 Total Scan time: 842.400 Total Display time: 0.050 Function used was FASTA [version 34.26.5 April 26, 2007]