FASTA searches a protein or DNA sequence data bank
 version 3.4t11 Apr 17, 2002
Please cite:
 W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

 ../query/mKIAA0404.ptfa, 1931 aa
 vs ./tmplib.26680 library

1767086 residues in  2168 sequences
  Expectation_n fit: rho(ln(x))= 5.9773+/-0.00564; mu= 17.4472+/- 0.378
 mean_var=151.7713+/-34.921, 0's: 0 Z-trim: 3  B-trim: 0 in 0/36
 Lambda= 0.1041

FASTA (3.45 Mar 2002) function [optimized, BL50 matrix (15:-5)] ktup: 2
 join: 42, opt: 30, open/ext: -10/-2, width:  16
The best scores are:                                       opt bits E(2168)
mKIAA4067  ( 245 res)   mbg04582                   ( 245)  989  161 4.4e-40


>>mKIAA4067  ( 245 res)   mbg04582                        (245 aa)
 initn: 985 init1: 565 opt: 989  Z-score: 811.9  bits: 160.7 E(): 4.4e-40
Smith-Waterman score: 989;  65.044% identity (67.123% ungapped) in 226 aa overlap (1702-1925:21-241)

            1680      1690      1700      1710      1720      1730 
mKIAA0 YHGKHVTVDQVGTFMGLLIGLAQLNCSELKLKRLCCRHGLLGVDKVLCYALNEWLQDIRK
                                     :  .:   .:::.::.. ::..:::.::.:
mKIAA4           YVVSKWESPDLQMYLYFFFALTVICS--SLLGIDKLFSYAISEWLSDIKK
                         10        20          30        40        

            1740      1750      1760      1770      1780      1790 
mKIAA0 NQLPGLLGGVGPMHSVVQLFQGFRDLLWLPIEQYRKDGRLIRGLQRGAASFGSSTASAAL
       :::::.:::::::::.::: ::..::.::::::::::::..::.::::::::.::: :::
mKIAA4 NQLPGILGGVGPMHSLVQLVQGLKDLVWLPIEQYRKDGRIVRGFQRGAASFGTSTAMAAL
       50        60        70        80        90       100        

            1800      1810      1820        1830      1840         
mKIAA0 ELSNRLVQAIQATAETVYDILSPASPVSRSLQDKRSSR--KLRRGQQPADLREGMAKAYD
       ::.::.::.:::.:::.::..::..    :.. :...:  . : ..::.:::::.::::.
mKIAA4 ELTNRMVQTIQAAAETAYDMVSPST---LSIEPKKAKRFPHHRLAHQPVDLREGVAKAYS
      110       120       130          140       150       160     

    1850      1860      1870      1880      1890      1900         
mKIAA0 AVREGILDTAQTICDVASRGHEQKGLTGAVGGVIRQLPPTVVKPIIVATEATSNVLGGMR
       .:.::: :::::: ..:.: ::..:.::::: :.::.::.::.:.:::::::::::::::
mKIAA4 VVKEGITDTAQTIYETAAREHESRGVTGAVGEVLRQIPPAVVRPLIVATEATSNVLGGMR
         170       180       190       200       210       220     

    1910      1920      1930 
mKIAA0 NQILPDAHKDHALKWRLEEAQD
       ::: ::...:.. :::      
mKIAA4 NQIRPDVRQDESQKWRHGED  
         230       240       




1931 residues in 1 query   sequences
1767086 residues in 2168 library sequences
 Scomplib [34t11]
 start: Mon Mar 27 10:20:00 2006 done: Mon Mar 27 10:20:01 2006
 Scan time:  1.490 Display time:  0.030

Function used was FASTA [version 3.4t11 Apr 17, 2002]