FASTA searches a protein or DNA sequence data bank
 version 3.4t11 Apr 17, 2002
Please cite:
 W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

 ../query/mFLJ00343.ptfa, 1952 aa
 vs ./tmplib.26680 library

1767065 residues in  2168 sequences
  Expectation_n fit: rho(ln(x))= 5.8339+/-0.00492; mu= 14.7645+/- 0.329
 mean_var=132.0101+/-30.618, 0's: 0 Z-trim: 1  B-trim: 0 in 0/36
 Lambda= 0.1116

FASTA (3.45 Mar 2002) function [optimized, BL50 matrix (15:-5)] ktup: 2
 join: 42, opt: 30, open/ext: -10/-2, width:  16
The best scores are:                                       opt bits E(2168)
mKIAA0517  ( 787 res)   mfj13077                   ( 787)  197   44 0.00014


>>mKIAA0517  ( 787 res)   mfj13077                        (787 aa)
 initn: 146 init1: 146 opt: 197  Z-score: 174.8  bits: 44.5 E(): 0.00014
Smith-Waterman score: 197;  26.154% identity (29.310% ungapped) in 195 aa overlap (955-1135:368-555)

          930       940       950       960       970       980    
mFLJ00 VPGRYTILIKYGGDEIPFSPYRVRAVPTGDASKCTVTGAGIGPTIQIGEETVITVDTK--
                                     ::. ..:: :.  :: ::.   .:. ::  
mKIAA0 ENDQLDFIVETEGLKKSIHNLGTILTTNAVASETVATGEGLRQTI-IGQPMSVTITTKDK
       340       350       360       370       380        390      

                 990      1000      1010      1020      1030       
mFLJ00 -----AAGKGKVTCTVCTPDGSEVDVDVVENEDGTFDIFYTAPQPGKYVICVRFGGEHVP
             .:.. .:  . ::::: .: ....:..::....::. . : ... .:.  .:. 
mKIAA0 DGELCKTGNAYLTAELSTPDGSVADGEILDNKNGTYEFLYTVQKEGDFTLSLRLYDQHIR
        400       410       420       430       440       450      

      1040        1050      1060      1070      1080      1090     
mFLJ00 NSPFQVTAL--AGDQPTVQTPLRSQQLAPQYNYPQGSQQTWIPERPMVGVNGLDVTSLRP
       .:::.. ..  :  .::..   :  . .:     .:  .    .:: ... .    .  :
mKIAA0 GSPFKLKVIRSADVSPTTEGVKRRVK-SPG----SGHVKQKAVKRP-ASMYSTGKRKENP
        460       470       480            490        500       510

        1100       1110      1120          1130      1140      1150
mFLJ00 FDLVIPFTI-KKGEITGEVRMPSGKVAQPS----ITDNKDGTVTVRYSPSEAGLHEMDIR
       ..  . : .  ::.  ::    .: .:. :    :.:...  : .               
mKIAA0 IEDDLIFRVGTKGRNKGEFTNLQGVAASTSGKILIADSNNQCVQIFSNDGQFKSRFGIRG
              520       530       540       550       560       570

             1160      1170      1180      1190      1200      1210
mFLJ00 YDNMHIPGSPLQFYVDYVNCGHITAYGPGLTHGVVNKPATFTVNTKDAGEGGLSLAIEGP
                                                                   
mKIAA0 RSPGQLQRPTGVAVHPSGDIIIADYDNKWVSIFSNDGKFKTKIGSGKLMGPKGVSVDRNG
              580       590       600       610       620       630




1952 residues in 1 query   sequences
1767065 residues in 2168 library sequences
 Scomplib [34t11]
 start: Mon Mar 27 10:09:30 2006 done: Mon Mar 27 10:09:31 2006
 Scan time:  1.410 Display time:  0.050

Function used was FASTA [version 3.4t11 Apr 17, 2002]