FASTA searches a protein or DNA sequence data bank
 version 3.4t11 Apr 17, 2002
Please cite:
 W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

 ../query/mKIAA0051.ptfa, 1681 aa
 vs ./tmplib.26680 library

1767336 residues in  2168 sequences
  Expectation_n fit: rho(ln(x))= 4.9132+/-0.00523; mu= 18.8833+/- 0.348
 mean_var=137.9144+/-33.108, 0's: 0 Z-trim: 4  B-trim: 43 in 1/35
 Lambda= 0.1092

FASTA (3.45 Mar 2002) function [optimized, BL50 matrix (15:-5)] ktup: 2
 join: 41, opt: 29, open/ext: -10/-2, width:  16
The best scores are:                                       opt bits E(2168)
mKIAA4007  ( 178 res)   mnj07273                   ( 178)  906  155 1.6e-38


>>mKIAA4007  ( 178 res)   mnj07273                        (178 aa)
 initn: 899 init1: 899 opt: 906  Z-score: 783.7  bits: 154.8 E(): 1.6e-38
Smith-Waterman score: 906;  76.966% identity (76.966% ungapped) in 178 aa overlap (112-289:1-178)

              90       100       110       120       130       140 
mKIAA0 LGEDLPPTTELEEGLRNGVYLAKLGNFFSPKVVSLKKIYDREQTRYKATGLHFRHTDNVI
                                     :.:: ::::: :::::: .:::::::::..
mKIAA4                               KMVSEKKIYDVEQTRYKKSGLHFRHTDNTV
                                             10        20        30

             150       160       170       180       190       200 
mKIAA0 QWLNAMDEIGLPKIFYPETTDIYDRKNMPRCIYCIHALSLYLFKLGLAPQIQDLYGKVDF
       ::: ::. :::::::::::::.:::::.:: :::::::::::::::.::::::: :::::
mKIAA4 QWLRAMEAIGLPKIFYPETTDVYDRKNIPRMIYCIHALSLYLFKLGIAPQIQDLLGKVDF
               40        50        60        70        80        90

             210       220       230       240       250       260 
mKIAA0 TEEEINNMKIELEKYGIQMPAFSKIGGILANELSVDEAALHAAVIAINEAIDRRVAADTF
       :::::.::. :::::::::::::::::::::::::::::::::::::::::.. :: .:.
mKIAA4 TEEEISNMRKELEKYGIQMPAFSKIGGILANELSVDEAALHAAVIAINEAIEKGVAKQTI
              100       110       120       130       140       150

             270       280       290       300       310       320 
mKIAA0 TALKNPNAMLVNLEEGLAPTYQDVLYQAKQDKMTNAKNRTENSDRERDVYEELLTQAEIQ
        .:.::::.:. ....:.  ::  :..:                                
mKIAA4 ITLRNPNAVLTCVDDSLSQEYQKELWEA                                
              160       170                                        




1681 residues in 1 query   sequences
1767336 residues in 2168 library sequences
 Scomplib [34t11]
 start: Mon Mar 27 10:11:14 2006 done: Mon Mar 27 10:11:15 2006
 Scan time:  1.260 Display time:  0.010

Function used was FASTA [version 3.4t11 Apr 17, 2002]