FASTA searches a protein or DNA sequence data bank
 version 3.4t11 Apr 17, 2002
Please cite:
 W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

 ../query/mKIAA0185.ptfa, 1866 aa
 vs ./tmplib.26680 library

1767151 residues in  2168 sequences
  Expectation_n fit: rho(ln(x))= 6.5915+/-0.00595; mu= 11.7037+/- 0.398
 mean_var=193.3638+/-45.988, 0's: 0 Z-trim: 3  B-trim: 0 in 0/36
 Lambda= 0.0922

FASTA (3.45 Mar 2002) function [optimized, BL50 matrix (15:-5)] ktup: 2
 join: 42, opt: 30, open/ext: -10/-2, width:  16
The best scores are:                                       opt bits E(2168)
mKIAA1177  ( 366 res)   msk07057                   ( 366)  190   39  0.0032


>>mKIAA1177  ( 366 res)   msk07057                        (366 aa)
 initn:  77 init1:  77 opt: 190  Z-score: 150.2  bits: 38.8 E(): 0.0032
Smith-Waterman score: 190;  22.984% identity (26.147% ungapped) in 248 aa overlap (1583-1813:1-235)

           1560      1570      1580      1590      1600            
mKIAA0 SDSEDEQLHQAKKKKGKKERELEKQKAEKELSRIEEALMDPGRQPESADDFDRLV---LS
                                     :. .::.:   :    .   .::..   ..
mKIAA1                               LADLEESL---GTFQSTKAVYDRILDLRIA
                                                10        20       

    1610      1620      1630      1640      1650      1660         
mKIAA0 SPNSSILWLQYMAFHLQATEIEKARAVAERALKTISFREEQEKLNVWVALLN-LENMYGS
       .:.  : . ...  :    :  ::    ::.   ::. .  .  ..: . :. . . ::.
mKIAA1 TPQIVINYAMFLEEHKYFEESFKAY---ERG---ISLFKWPNVSDIWSTYLTKFISRYGG
        30        40        50              60        70        80 

       1670      1680      1690      1700          1710      1720  
mKIAA0 Q--ESLTKVFERAVQYNEPLKVFLHLADIYTKSEKY----KEAGELYNRMLKRFRQEKA-
       .  :    .::.:..   : :    :  .:.. :.     ..:  .:.:  .  .  .  
mKIAA1 RKLERARDLFEQALDGCPP-KYAKTLYLLYAQLEEEWGLARHAMAVYDRATRAVEPAQQY
              90       100        110       120       130       140

                1730      1740      1750      1760      1770       
mKIAA0 ----VWIKYGAFVLGRSQAGASHRVLQRALECLPAKEHVDVIVKFAQLEFQLGDVERAKA
           ..:: .: . : ..   .. . :.:.: :  ..  .. ..::..: .::...::.:
mKIAA1 DMFNIYIKRAAEIYGVTH---TRGIYQKAIEVLSDEHAREMCLRFADMECKLGEIDRARA
              150          160       170       180       190       

      1780       1790       1800      1810      1820      1830     
mKIAA0 IFE-NTLSTYPKRTDV-WSVYIDMTIKHGSQTAVRDIFERVIHLSLAPKRMKFFFKRYLD
       :.   .    :. : . :... :. ..::.. ..:....                     
mKIAA1 IYSFCSQICDPRTTGAFWQTWKDFEVRHGNEDTIREMLRIRRSVQATYNTQVNFMASQML
       200       210       220       230       240       250       

        1840      1850      1860                                   
mKIAA0 YEKQHGTEKDVQAVKAKALEYVEAKSSALED                             
                                                                   
mKIAA1 KVSGSATGTVSDLAPGQSGMDDMKLLEQRAEQLAAEAERDQPPRAQSKIFFVRSDASREE
       260       270       280       290       300       310       




1866 residues in 1 query   sequences
1767151 residues in 2168 library sequences
 Scomplib [34t11]
 start: Mon Mar 27 10:14:03 2006 done: Mon Mar 27 10:14:05 2006
 Scan time:  1.390 Display time:  0.030

Function used was FASTA [version 3.4t11 Apr 17, 2002]