# /usr/local/bin/fasta34_t -T 4 -b50 -d10 -E0.01 -H -O./tmp/mpf00462.fasta.nr -Q ../query/mKIAA0917.ptfa /cdna4/rodent/rouge_util/new.rouge/nfasta/nr 2 FASTA searches a protein or DNA sequence data bank version 34.26.5 April 26, 2007 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 mKIAA0917, 164 aa vs /cdna4/rodent/rouge_util/new.rouge/nfasta/nr library 2727779818 residues in 7921681 sequences statistics sampled from 60000 to 7921033 sequences Expectation_n fit: rho(ln(x))= 5.1155+/-0.000183; mu= 6.4053+/- 0.010 mean_var=59.8550+/-12.050, 0's: 37 Z-trim: 40 B-trim: 3941 in 2/63 Lambda= 0.165777 FASTA (3.5 Sept 2006) function [optimized, BL50 matrix (15:-5)] ktup: 2 join: 36, opt: 24, open/ext: -10/-2, width: 16 The best scores are: opt bits E(7921681) gi|26334141|dbj|BAC30788.1| unnamed protein produc ( 390) 817 203.4 3.1e-50 gi|20379941|gb|AAH27793.1| Scfd1 protein [Mus musc ( 575) 817 203.4 4.3e-50 gi|12851714|dbj|BAB29141.1| unnamed protein produc ( 639) 817 203.5 4.7e-50 gi|51316833|sp|Q8BRF7.1|SCFD1_MOUSE RecName: Full= ( 639) 817 203.5 4.7e-50 gi|33150536|gb|AAP97146.1|AF086916_1 sly1p [Homo s ( 617) 815 203.0 6.3e-50 gi|73962930|ref|XP_537403.2| PREDICTED: similar to ( 636) 815 203.0 6.5e-50 gi|5730482|gb|AAD48586.1| vesicle transport-relate ( 638) 815 203.0 6.5e-50 gi|51316882|sp|Q8WVM8.4|SCFD1_HUMAN RecName: Full= ( 642) 815 203.0 6.5e-50 gi|12276129|gb|AAG50273.1|AF319958_1 vesicle trans ( 642) 815 203.0 6.5e-50 gi|62897199|dbj|BAD96540.1| vesicle transport-rela ( 642) 815 203.0 6.5e-50 gi|194038813|ref|XP_001924849.1| PREDICTED: sec1 f ( 563) 814 202.7 6.9e-50 gi|109083219|ref|XP_001107671.1| PREDICTED: simila ( 704) 815 203.0 7e-50 gi|114652550|ref|XP_509885.2| PREDICTED: vesicle t ( 713) 815 203.0 7.1e-50 gi|194676897|ref|XP_001790303.1| PREDICTED: simila ( 636) 814 202.8 7.6e-50 gi|17389391|gb|AAH17734.1| Sec1 family domain cont ( 642) 812 202.3 1.1e-49 gi|149410345|ref|XP_001512483.1| PREDICTED: simila ( 639) 809 201.6 1.8e-49 gi|5138928|gb|AAD40381.1| vesicle transport-relate ( 640) 802 199.9 5.6e-49 gi|118091839|ref|XP_421224.2| PREDICTED: similar t ( 720) 798 199.0 1.2e-48 gi|51316554|sp|Q62991.1|SCFD1_RAT RecName: Full=Se ( 637) 794 198.0 2.1e-48 gi|1144569|gb|AAB08009.1| r-sly1 ( 648) 794 198.0 2.1e-48 gi|224051384|ref|XP_002199684.1| PREDICTED: G2/M-p (1516) 785 196.0 1.9e-47 gi|190337751|gb|AAI63870.1| Suppressor of ypt1 [Da ( 632) 775 193.4 4.9e-47 gi|26788034|emb|CAD58746.1| suppressor of ypt1 [Da ( 632) 775 193.4 4.9e-47 gi|49116895|gb|AAH73717.1| MGC83661 protein [Xenop ( 632) 758 189.4 8.2e-46 gi|195539807|gb|AAI67919.1| Unknown (protein for M ( 632) 754 188.4 1.6e-45 gi|119586372|gb|EAW65968.1| sec1 family domain con ( 575) 693 173.8 3.6e-41 gi|67972102|dbj|BAE02393.1| unnamed protein produc ( 575) 693 173.8 3.6e-41 gi|210123488|gb|EEA71189.1| hypothetical protein B ( 642) 686 172.1 1.3e-40 gi|194207261|ref|XP_001489363.2| PREDICTED: sec1 f ( 575) 685 171.9 1.4e-40 gi|61680549|pdb|1Y9J|A Chain A, Solution Structure ( 159) 652 163.7 1.1e-38 gi|115643098|ref|XP_001191223.1| PREDICTED: simila ( 651) 655 164.7 2.2e-38 gi|221043594|dbj|BAH13474.1| unnamed protein produ ( 583) 648 163.0 6.3e-38 gi|148704836|gb|EDL36783.1| sec1 family domain con ( 479) 632 159.2 7.6e-37 gi|156211261|gb|EDO32378.1| predicted protein [Nem ( 640) 629 158.5 1.6e-36 gi|126282013|ref|XP_001364482.1| PREDICTED: simila ( 641) 622 156.8 5.1e-36 gi|149051202|gb|EDM03375.1| sec1 family domain con ( 326) 615 155.0 9.2e-36 gi|215507640|gb|EEC17132.1| conserved hypothetical ( 628) 605 152.8 8.4e-35 gi|156555473|ref|XP_001606244.1| PREDICTED: simila ( 585) 568 143.9 3.6e-32 gi|108882781|gb|EAT47006.1| vesicle protein sortin ( 633) 567 143.7 4.6e-32 gi|48094997|ref|XP_394325.1| PREDICTED: similar to ( 629) 566 143.4 5.4e-32 gi|157019533|gb|EAA05177.4| AGAP011358-PA [Anophel ( 660) 564 143.0 7.8e-32 gi|167880171|gb|EDS43554.1| vesicle protein sortin ( 639) 563 142.7 9e-32 gi|193683468|ref|XP_001951781.1| PREDICTED: simila ( 622) 560 142.0 1.4e-31 gi|190583559|gb|EDV23629.1| hypothetical protein T ( 585) 550 139.6 7.2e-31 gi|190615081|gb|EDV30605.1| GF20604 [Drosophila an ( 639) 544 138.2 2.1e-30 gi|91080709|ref|XP_975318.1| PREDICTED: similar to ( 627) 543 137.9 2.4e-30 gi|66771053|gb|AAY54838.1| IP05647p [Drosophila me ( 190) 533 135.3 4.7e-30 gi|194148430|gb|EDW64128.1| Slh [Drosophila virili ( 638) 539 137.0 4.8e-30 gi|193912274|gb|EDW11141.1| GI16994 [Drosophila mo ( 639) 539 137.0 4.8e-30 gi|190660288|gb|EDV57480.1| GG24515 [Drosophila er ( 639) 539 137.0 4.8e-30 >>gi|26334141|dbj|BAC30788.1| unnamed protein product [M (390 aa) initn: 810 init1: 810 opt: 817 Z-score: 1058.3 bits: 203.4 E(): 3.1e-50 Smith-Waterman score: 817; 97.674% identity (99.225% similar) in 129 aa overlap (36-164:45-173) 10 20 30 40 50 60 mKIAA0 HGQHSGEANSGSEADVEFQCLMLKTVLENQYGRFGQDIISPLLSVKELRDMGITLHLLLH : :::::::::::::::::::::::::::: gi|263 RQTVALKRMLNFNVPHVKNSTGEPVWKVLIYDRFGQDIISPLLSVKELRDMGITLHLLLH 20 30 40 50 60 70 70 80 90 100 110 120 mKIAA0 SDRDPIPDVPAVYFVMPTEENIDRLCQDLRNQLYESYYLNFISAISRSKLEDIANAALAA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|263 SDRDPIPDVPAVYFVMPTEENIDRLCQDLRNQLYESYYLNFISAISRSKLEDIANAALAA 80 90 100 110 120 130 130 140 150 160 mKIAA0 SAVTQVAKVFDQYLNFITLEDDMFVLCNQNKELVSYRGM :::::::::::::::::::::::::::::::::::::.. gi|263 SAVTQVAKVFDQYLNFITLEDDMFVLCNQNKELVSYRAINRPDITDTEMETVMDTIVDSL 140 150 160 170 180 190 gi|263 FCFFVTLGAVPIIRCSRGTAAEMVAVKLDKKLRENLRDARNSLFTGDPLGTGQFSFQRPL 200 210 220 230 240 250 >>gi|20379941|gb|AAH27793.1| Scfd1 protein [Mus musculus (575 aa) initn: 810 init1: 810 opt: 817 Z-score: 1055.7 bits: 203.4 E(): 4.3e-50 Smith-Waterman score: 817; 97.674% identity (99.225% similar) in 129 aa overlap (36-164:23-151) 10 20 30 40 50 60 mKIAA0 HGQHSGEANSGSEADVEFQCLMLKTVLENQYGRFGQDIISPLLSVKELRDMGITLHLLLH : :::::::::::::::::::::::::::: gi|203 MLNFNVPHVKNSTGEPVWKVLIYDRFGQDIISPLLSVKELRDMGITLHLLLH 10 20 30 40 50 70 80 90 100 110 120 mKIAA0 SDRDPIPDVPAVYFVMPTEENIDRLCQDLRNQLYESYYLNFISAISRSKLEDIANAALAA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|203 SDRDPIPDVPAVYFVMPTEENIDRLCQDLRNQLYESYYLNFISAISRSKLEDIANAALAA 60 70 80 90 100 110 130 140 150 160 mKIAA0 SAVTQVAKVFDQYLNFITLEDDMFVLCNQNKELVSYRGM :::::::::::::::::::::::::::::::::::::.. gi|203 SAVTQVAKVFDQYLNFITLEDDMFVLCNQNKELVSYRAINRPDITDTEMETVMDTIVDSL 120 130 140 150 160 170 gi|203 FCFFVTLGAVPIIRCSRGTAAEMVAVKLDKKLRENLRDARNSLFTGDPLGTGQFSFQRPL 180 190 200 210 220 230 >>gi|12851714|dbj|BAB29141.1| unnamed protein product [M (639 aa) initn: 810 init1: 810 opt: 817 Z-score: 1055.0 bits: 203.5 E(): 4.7e-50 Smith-Waterman score: 817; 97.674% identity (99.225% similar) in 129 aa overlap (36-164:45-173) 10 20 30 40 50 60 mKIAA0 HGQHSGEANSGSEADVEFQCLMLKTVLENQYGRFGQDIISPLLSVKELRDMGITLHLLLH : :::::::::::::::::::::::::::: gi|128 RQTVALKRMLNFNVPHVKNSTGEPVWKVLIYDRFGQDIISPLLSVKELRDMGITLHLLLH 20 30 40 50 60 70 70 80 90 100 110 120 mKIAA0 SDRDPIPDVPAVYFVMPTEENIDRLCQDLRNQLYESYYLNFISAISRSKLEDIANAALAA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|128 SDRDPIPDVPAVYFVMPTEENIDRLCQDLRNQLYESYYLNFISAISRSKLEDIANAALAA 80 90 100 110 120 130 130 140 150 160 mKIAA0 SAVTQVAKVFDQYLNFITLEDDMFVLCNQNKELVSYRGM :::::::::::::::::::::::::::::::::::::.. gi|128 SAVTQVAKVFDQYLNFITLEDDMFVLCNQNKELVSYRAINRPDITDTEMETVMDTIVDSL 140 150 160 170 180 190 gi|128 FCFFVTLGAVPIIRCSRGTAAEMVAVKLDKKLRENLRDARNSLFTGDPLGTGQFSFQRPL 200 210 220 230 240 250 >>gi|51316833|sp|Q8BRF7.1|SCFD1_MOUSE RecName: Full=Sec1 (639 aa) initn: 810 init1: 810 opt: 817 Z-score: 1055.0 bits: 203.5 E(): 4.7e-50 Smith-Waterman score: 817; 97.674% identity (99.225% similar) in 129 aa overlap (36-164:45-173) 10 20 30 40 50 60 mKIAA0 HGQHSGEANSGSEADVEFQCLMLKTVLENQYGRFGQDIISPLLSVKELRDMGITLHLLLH : :::::::::::::::::::::::::::: gi|513 RQTVALKRMLNFNVPHVKNSTGEPVWKVLIYDRFGQDIISPLLSVKELRDMGITLHLLLH 20 30 40 50 60 70 70 80 90 100 110 120 mKIAA0 SDRDPIPDVPAVYFVMPTEENIDRLCQDLRNQLYESYYLNFISAISRSKLEDIANAALAA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|513 SDRDPIPDVPAVYFVMPTEENIDRLCQDLRNQLYESYYLNFISAISRSKLEDIANAALAA 80 90 100 110 120 130 130 140 150 160 mKIAA0 SAVTQVAKVFDQYLNFITLEDDMFVLCNQNKELVSYRGM :::::::::::::::::::::::::::::::::::::.. gi|513 SAVTQVAKVFDQYLNFITLEDDMFVLCNQNKELVSYRAINRPDITDTEMETVMDTIVDSL 140 150 160 170 180 190 gi|513 FCFFVTLGAVPIIRCSRGTAAEMVAVKLDKKLRENLRDARNSLFTGDPLGTGQFSFQRPL 200 210 220 230 240 250 >>gi|33150536|gb|AAP97146.1|AF086916_1 sly1p [Homo sapie (617 aa) initn: 808 init1: 808 opt: 815 Z-score: 1052.7 bits: 203.0 E(): 6.3e-50 Smith-Waterman score: 815; 96.899% identity (99.225% similar) in 129 aa overlap (36-164:23-151) 10 20 30 40 50 60 mKIAA0 HGQHSGEANSGSEADVEFQCLMLKTVLENQYGRFGQDIISPLLSVKELRDMGITLHLLLH : :::::::::::::::::::::::::::: gi|331 MLNFNVPHIKNSTGEPVWKVLIYDRFGQDIISPLLSVKELRDMGITLHLLLH 10 20 30 40 50 70 80 90 100 110 120 mKIAA0 SDRDPIPDVPAVYFVMPTEENIDRLCQDLRNQLYESYYLNFISAISRSKLEDIANAALAA ::::::::::::::::::::::::.::::::::::::::::::::::::::::::::::: gi|331 SDRDPIPDVPAVYFVMPTEENIDRMCQDLRNQLYESYYLNFISAISRSKLEDIANAALAA 60 70 80 90 100 110 130 140 150 160 mKIAA0 SAVTQVAKVFDQYLNFITLEDDMFVLCNQNKELVSYRGM :::::::::::::::::::::::::::::::::::::.. gi|331 SAVTQVAKVFDQYLNFITLEDDMFVLCNQNKELVSYRAINRPDITDTEMETVMDTIVDSL 120 130 140 150 160 170 gi|331 FCFYGTLGDVPIIRCSRGTAAEMVAVKLDKKLRENLRDARNSLFTGDTLGAGQFSFQRPL 180 190 200 210 220 230 >>gi|73962930|ref|XP_537403.2| PREDICTED: similar to ves (636 aa) initn: 808 init1: 808 opt: 815 Z-score: 1052.5 bits: 203.0 E(): 6.5e-50 Smith-Waterman score: 815; 96.899% identity (99.225% similar) in 129 aa overlap (36-164:42-170) 10 20 30 40 50 60 mKIAA0 HGQHSGEANSGSEADVEFQCLMLKTVLENQYGRFGQDIISPLLSVKELRDMGITLHLLLH : :::::::::::::::::::::::::::: gi|739 RQTVALKRMLNFNVPHVKNSTGEPVWKVLIYDRFGQDIISPLLSVKELRDMGITLHLLLH 20 30 40 50 60 70 70 80 90 100 110 120 mKIAA0 SDRDPIPDVPAVYFVMPTEENIDRLCQDLRNQLYESYYLNFISAISRSKLEDIANAALAA ::::::::::::::::::::::::.::::::::::::::::::::::::::::::::::: gi|739 SDRDPIPDVPAVYFVMPTEENIDRMCQDLRNQLYESYYLNFISAISRSKLEDIANAALAA 80 90 100 110 120 130 130 140 150 160 mKIAA0 SAVTQVAKVFDQYLNFITLEDDMFVLCNQNKELVSYRGM :::::::::::::::::::::::::::::::::::::.. gi|739 SAVTQVAKVFDQYLNFITLEDDMFVLCNQNKELVSYRAINRPDITDTEMETVMDTIVDSL 140 150 160 170 180 190 gi|739 FCFFVTLGAVPIIRCSRGTAAEMVAVKLDKKLRENLRDARNSLFTGDTLGAGQFSFQRPL 200 210 220 230 240 250 >>gi|5730482|gb|AAD48586.1| vesicle transport-related pr (638 aa) initn: 830 init1: 808 opt: 815 Z-score: 1052.5 bits: 203.0 E(): 6.5e-50 Smith-Waterman score: 815; 96.899% identity (99.225% similar) in 129 aa overlap (36-164:45-173) 10 20 30 40 50 60 mKIAA0 HGQHSGEANSGSEADVEFQCLMLKTVLENQYGRFGQDIISPLLSVKELRDMGITLHLLLH : :::::::::::::::::::::::::::: gi|573 RQTVALKRMLNFNVPHIKNSTGEPVWKVLIYDRFGQDIISPLLSVKELRDMGITLHLLLH 20 30 40 50 60 70 70 80 90 100 110 120 mKIAA0 SDRDPIPDVPAVYFVMPTEENIDRLCQDLRNQLYESYYLNFISAISRSKLEDIANAALAA ::::::::::::::::::::::::.::::::::::::::::::::::::::::::::::: gi|573 SDRDPIPDVPAVYFVMPTEENIDRMCQDLRNQLYESYYLNFISAISRSKLEDIANAALAA 80 90 100 110 120 130 130 140 150 160 mKIAA0 SAVTQVAKVFDQYLNFITLEDDMFVLCNQNKELVSYRGM :::::::::::::::::::::::::::::::::::::.. gi|573 SAVTQVAKVFDQYLNFITLEDDMFVLCNQNKELVSYRAINRPDITDTEMETVMDTIVDSL 140 150 160 170 180 190 gi|573 FCFYGTRGDVPIIRCSRGTAAEMVAVKLDKKLRENLRDARNSLFTGDTLGAGQFSFQRPL 200 210 220 230 240 250 >>gi|51316882|sp|Q8WVM8.4|SCFD1_HUMAN RecName: Full=Sec1 (642 aa) initn: 833 init1: 808 opt: 815 Z-score: 1052.4 bits: 203.0 E(): 6.5e-50 Smith-Waterman score: 815; 96.899% identity (99.225% similar) in 129 aa overlap (36-164:48-176) 10 20 30 40 50 60 mKIAA0 HGQHSGEANSGSEADVEFQCLMLKTVLENQYGRFGQDIISPLLSVKELRDMGITLHLLLH : :::::::::::::::::::::::::::: gi|513 RQTVALKRMLNFNVPHIKNSTGEPVWKVLIYDRFGQDIISPLLSVKELRDMGITLHLLLH 20 30 40 50 60 70 70 80 90 100 110 120 mKIAA0 SDRDPIPDVPAVYFVMPTEENIDRLCQDLRNQLYESYYLNFISAISRSKLEDIANAALAA ::::::::::::::::::::::::.::::::::::::::::::::::::::::::::::: gi|513 SDRDPIPDVPAVYFVMPTEENIDRMCQDLRNQLYESYYLNFISAISRSKLEDIANAALAA 80 90 100 110 120 130 130 140 150 160 mKIAA0 SAVTQVAKVFDQYLNFITLEDDMFVLCNQNKELVSYRGM :::::::::::::::::::::::::::::::::::::.. gi|513 SAVTQVAKVFDQYLNFITLEDDMFVLCNQNKELVSYRAINRPDITDTEMETVMDTIVDSL 140 150 160 170 180 190 gi|513 FCFFVTLGAVPIIRCSRGTAAEMVAVKLDKKLRENLRDARNSLFTGDTLGAGQFSFQRPL 200 210 220 230 240 250 >>gi|12276129|gb|AAG50273.1|AF319958_1 vesicle transport (642 aa) initn: 833 init1: 808 opt: 815 Z-score: 1052.4 bits: 203.0 E(): 6.5e-50 Smith-Waterman score: 815; 96.899% identity (99.225% similar) in 129 aa overlap (36-164:48-176) 10 20 30 40 50 60 mKIAA0 HGQHSGEANSGSEADVEFQCLMLKTVLENQYGRFGQDIISPLLSVKELRDMGITLHLLLH : :::::::::::::::::::::::::::: gi|122 RQTVALKRMLNFNVPHIKNSTGEPIWKVLIYDRFGQDIISPLLSVKELRDMGITLHLLLH 20 30 40 50 60 70 70 80 90 100 110 120 mKIAA0 SDRDPIPDVPAVYFVMPTEENIDRLCQDLRNQLYESYYLNFISAISRSKLEDIANAALAA ::::::::::::::::::::::::.::::::::::::::::::::::::::::::::::: gi|122 SDRDPIPDVPAVYFVMPTEENIDRMCQDLRNQLYESYYLNFISAISRSKLEDIANAALAA 80 90 100 110 120 130 130 140 150 160 mKIAA0 SAVTQVAKVFDQYLNFITLEDDMFVLCNQNKELVSYRGM :::::::::::::::::::::::::::::::::::::.. gi|122 SAVTQVAKVFDQYLNFITLEDDMFVLCNQNKELVSYRAINRPDITDTEMETVMDTIVDSL 140 150 160 170 180 190 gi|122 FCFFVTLGAVPIIRCSRGTAAEMVAVKLDKKLRENLRDARNSLFTGDTLGAGQFSFQRPL 200 210 220 230 240 250 >>gi|62897199|dbj|BAD96540.1| vesicle transport-related (642 aa) initn: 833 init1: 808 opt: 815 Z-score: 1052.4 bits: 203.0 E(): 6.5e-50 Smith-Waterman score: 815; 96.899% identity (99.225% similar) in 129 aa overlap (36-164:48-176) 10 20 30 40 50 60 mKIAA0 HGQHSGEANSGSEADVEFQCLMLKTVLENQYGRFGQDIISPLLSVKELRDMGITLHLLLH : :::::::::::::::::::::::::::: gi|628 RQTVALKRMLNFNVPHIKNSTGEPVWKVLIYDRFGQDIISPLLSVKELRDMGITLHLLLH 20 30 40 50 60 70 70 80 90 100 110 120 mKIAA0 SDRDPIPDVPAVYFVMPTEENIDRLCQDLRNQLYESYYLNFISAISRSKLEDIANAALAA ::::::::::::::::::::::::.::::::::::::::::::::::::::::::::::: gi|628 SDRDPIPDVPAVYFVMPTEENIDRMCQDLRNQLYESYYLNFISAISRSKLEDIANAALAA 80 90 100 110 120 130 130 140 150 160 mKIAA0 SAVTQVAKVFDQYLNFITLEDDMFVLCNQNKELVSYRGM :::::::::::::::::::::::::::::::::::::.. gi|628 SAVTQVAKVFDQYLNFITLEDDMFVLCNQNKELVSYRAINRPDITDTEMETVMDTIVDSL 140 150 160 170 180 190 gi|628 FCFFVTLGAVPIIRCSRGTAAEMVAVKLDKKLRENLRDARNSLFTGDTLGAGQFSFQRPL 200 210 220 230 240 250 164 residues in 1 query sequences 2727779818 residues in 7921681 library sequences Tcomplib [34.26] (2 proc) start: Tue Mar 17 02:53:40 2009 done: Tue Mar 17 02:57:55 2009 Total Scan time: 614.820 Total Display time: 0.030 Function used was FASTA [version 34.26.5 April 26, 2007]