FASTA searches a protein or DNA sequence data bank
 version 3.4t11 Apr 17, 2002
Please cite:
 W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

 ../query/mKIAA0173.ptfa, 934 aa
 vs ./tmplib.26680 library

1768083 residues in  2168 sequences
  Expectation_n fit: rho(ln(x))= 6.1525+/-0.0054; mu= 11.9999+/- 0.361
 mean_var=137.7826+/-32.085, 0's: 0 Z-trim: 2  B-trim: 0 in 0/36
 Lambda= 0.1093

FASTA (3.45 Mar 2002) function [optimized, BL50 matrix (15:-5)] ktup: 2
 join: 39, opt: 27, open/ext: -10/-2, width:  16
The best scores are:                                       opt bits E(2168)
mKIAA0998  ( 1333 res)   mbg00723                  (1333) 1060  179 2.9e-45


>>mKIAA0998  ( 1333 res)   mbg00723                       (1333 aa)
 initn: 470 init1: 415 opt: 1060  Z-score: 905.1  bits: 179.3 E(): 2.9e-45
Smith-Waterman score: 1060;  36.075% identity (38.067% ungapped) in 535 aa overlap (280-798:2-524)

     250       260       270       280       290           300     
mKIAA0 ELGDGLEDSCSHDENEEEEGDSECSSLSVVSPSESVALISRNCVDLMSKS----LPNHEK
                                     .:.:  ....:.  .  :.:    : :.: 
mKIAA0                              QTPKEMPVVMARDLEETASSSEDEDLANQED
                                            10        20        30 

         310       320            330       340       350       360
mKIAA0 VVRPALIYSLFPNVTPTIYFG-----TRDERVEKLPWEQRRLLRWKMSTVTPNIVKQTIG
         .: ....      :.. :      :.:. .. .   .:  : .:.  .   .:.. . 
mKIAA0 --HPCIMWTGGCRRIPVLVFHAEAILTKDNNIRVIG--ERYHLSYKIVRTDSRLVRSILT
                40        50        60          70        80       

               370        380       390       400       410        
mKIAA0 RSHF-KISKRNDDWLGCW-GHHMKSPGFRSIREHQKLNHFPGSFQIGRKDRLWRNLSRMQ
          : ..   . :.   : : :.:   .:.. : ::.:::: :... :::::..:. :::
mKIAA0 AHGFHEVHPSSTDYNLMWTGSHLKPFLLRTLSEAQKVNHFPRSYELTRKDRLYKNIIRMQ
        90       100       110       120       130       140       

      420       430       440       450       460       470        
mKIAA0 SRFGKKEFSFFPQSFILPQDSKLLRKAWESSSRQKWIVKPPASARGIGIQVIHKWSQLPK
          : : : ..::.:.:: .   . ... :..:  ::::: ::.:: :. .:.. .:.  
mKIAA0 HTHGFKAFHILPQTFLLPAEYAEFCNSY-SKDRGPWIVKPVASSRGRGVYLINNPNQISL
       150       160       170        180       190       200      

      480       490       500       510       520       530        
mKIAA0 RRPLLVQRYLHKPYLISGSKFDLRIYVYVTSYDPLRIYLFSDGLVRFASCKYSPSMKSLS
       .. .::.::...: ::.  :::.:.:: ::::::: :::. .::.:::. .:. . :.. 
mKIAA0 EENILVSRYINNPLLIDDFKFDVRLYVLVTSYDPLVIYLYEEGLARFATVRYDQGSKNIR
        210       220       230       240       250       260      

      540       550       560        570       580       590       
mKIAA0 NKFMHLTNYSVNKKNTEYQANAD-ETACQGHKWALKALWNYLSQKGINSDAIWEKIKDVV
       :.::::::::::::. .: .  : :.   :.::...:.  ::.:.: .. :.  ...:..
mKIAA0 NQFMHLTNYSVNKKSGDYVSCDDPEVEDYGNKWSMSAMLRYLKQEGKDTTALMAHVEDLI
        270       280       290       300       310       320      

       600       610       620       630       640       650       
mKIAA0 VKTIISSEPYVTNLLKLYVRRPYSCHELFGFDIMLDENLKPWVLEVNISPSLHSNSPLDI
       .:::::.:  ...  : .: .  :: ::.:::...:..::::.::::.::::  ..:::.
mKIAA0 IKTIISAELAIATACKTFVPHRSSCFELYGFDVLIDNTLKPWLLEVNLSPSLACDAPLDL
        330       340       350       360       370       380      

       660       670       680        690       700       710      
mKIAA0 SIKGQMIRDLLNLAGFVLPNMEDIISSSS-SPSSSSGSSTSLPSSPRDKCQMTPEHFTAQ
       .::..:: :.....:::  .  .  :. :  ::  :.  . . .  : .    :   .  
mKIAA0 KIKASMISDMFTVVGFVCQDPAQRTSNRSIYPSFESSRRNPFQKPQRTR----PLSASDA
        390       400       410       420       430           440  

        720        730       740       750       760        770    
mKIAA0 KMKK-AYYLTQKIPDQDFYASVLDVLTPDDVRVLVEMEDEFSRRGQFERIFP-SRISSRY
       .::. .    .:.: . . .:::  :. ....:: ....: .::: : :::: :.    :
mKIAA0 EMKNLVASAREKVPGK-LGGSVLG-LSMEEIKVLRRVKEENDRRGGFIRIFPTSETWEIY
            450        460        470       480       490       500

          780        790       800       810       820       830   
mKIAA0 LRFFEQPRYFN-ILTTQWEQKYHGNKLKGVDLLRNWCYKGFHTGIVSDSAPLWSLPTSLM
         ..:.   .: .:.:.  :  .::                                   
mKIAA0 GSYLEHKTSMNYMLATRLFQD-RGNPRRSLLTGRARVSTEGAPELKVESMNSKAKLHAAL
              510       520        530       540       550         




934 residues in 1 query   sequences
1768083 residues in 2168 library sequences
 Scomplib [34t11]
 start: Mon Mar 27 10:13:48 2006 done: Mon Mar 27 10:13:49 2006
 Scan time:  0.990 Display time:  0.060

Function used was FASTA [version 3.4t11 Apr 17, 2002]