# /usr/local/bin/fasta34_t -T 4 -b50 -d10 -E0.01 -H -O./tmp/mpf00136.fasta.nr -Q ../query/mKIAA0857.ptfa /cdna4/rodent/rouge_util/new.rouge/nfasta/nr 2 FASTA searches a protein or DNA sequence data bank version 34.26.5 April 26, 2007 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 mKIAA0857, 1353 aa vs /cdna4/rodent/rouge_util/new.rouge/nfasta/nr library 2727779818 residues in 7921681 sequences statistics sampled from 60000 to 7894085 sequences Expectation_n fit: rho(ln(x))= 7.0077+/-0.000213; mu= 7.7766+/- 0.012 mean_var=172.7691+/-32.884, 0's: 34 Z-trim: 113 B-trim: 348 in 1/65 Lambda= 0.097576 FASTA (3.5 Sept 2006) function [optimized, BL50 matrix (15:-5)] ktup: 2 join: 40, opt: 28, open/ext: -10/-2, width: 16 The best scores are: opt bits E(7921681) gi|162318388|gb|AAI56560.1| RAB11 family interacti (1318) 8880 1263.5 0 gi|109473811|ref|XP_001073801.1| PREDICTED: simila (1317) 8050 1146.6 0 gi|73981000|ref|XP_540231.2| PREDICTED: similar to (1325) 4038 581.9 9.9e-163 gi|34222919|sp|Q8R361.2|RFIP5_MOUSE RecName: Full= ( 645) 3446 498.2 7.4e-138 gi|148666709|gb|EDK99125.1| RAB11 family interacti ( 623) 3291 476.4 2.7e-131 gi|119903259|ref|XP_616110.3| PREDICTED: similar t ( 653) 2940 427.0 2.1e-116 gi|109103540|ref|XP_001103469.1| PREDICTED: simila ( 966) 2911 423.1 4.6e-115 gi|34223002|sp|Q9BXF6.1|RFIP5_HUMAN RecName: Full= ( 653) 2900 421.3 1e-114 gi|62630155|gb|AAX88900.1| unknown [Homo sapiens] ( 522) 2880 418.4 6.2e-114 gi|194220613|ref|XP_001917193.1| PREDICTED: RAB11 ( 651) 2876 418.0 1.1e-113 gi|23271268|gb|AAH35013.1| RAB11 family interactin ( 652) 2874 417.7 1.3e-113 gi|52078345|gb|AAH51063.3| Rab11fip5 protein [Mus ( 523) 2618 381.5 7.8e-103 gi|149036565|gb|EDL91183.1| rCG56148 [Rattus norve ( 536) 2548 371.7 7.4e-100 gi|74203023|dbj|BAE26213.1| unnamed protein produc ( 518) 2480 362.1 5.5e-97 gi|6979206|gb|AAF34356.1|AF153085_1 phosphoprotein ( 549) 2273 333.0 3.4e-88 gi|119620155|gb|EAW99749.1| RAB11 family interacti ( 575) 2034 299.4 4.7e-78 gi|5912136|emb|CAB56002.1| hypothetical protein [H ( 253) 1375 206.2 2.3e-50 gi|117558545|gb|AAI27283.1| Rab11fip5 protein [Xen ( 607) 980 151.0 2.2e-33 gi|118090905|ref|XP_420890.2| PREDICTED: similar t ( 524) 888 138.0 1.6e-29 gi|47123092|gb|AAH70758.1| MGC83776 protein [Xenop ( 629) 883 137.4 3e-29 gi|20071446|gb|AAH26473.1| Rab11fip5 protein [Mus ( 243) 864 134.3 9.9e-29 gi|73979203|ref|XP_539967.2| PREDICTED: similar to (1273) 753 119.4 1.6e-23 gi|62822197|gb|AAY14746.1| unknown [Homo sapiens] ( 131) 719 113.6 9.1e-23 gi|33439255|gb|AAQ18786.1| Rab11-family interactin (1283) 698 111.7 3.3e-21 gi|67472130|sp|Q6WKZ4.2|RFIP1_HUMAN RecName: Full= (1283) 697 111.5 3.7e-21 gi|50659104|ref|NP_001002814.1| RAB11 family inter (1283) 696 111.4 4.1e-21 gi|109086159|ref|XP_001089664.1| PREDICTED: simila (1275) 690 110.5 7.3e-21 gi|20068811|gb|AAM09571.1|AF368294_1 Rab-coupling ( 649) 685 109.5 7.5e-21 gi|124249097|ref|NP_001074282.1| RAB11 family inte (1166) 687 110.1 9.2e-21 gi|119583753|gb|EAW63349.1| RAB11 family interacti ( 648) 670 107.4 3.2e-20 gi|78459239|gb|ABB43161.1| RAB11-family interactin ( 649) 670 107.4 3.2e-20 gi|50603589|gb|AAH77720.1| RAB11 family interactin ( 649) 669 107.3 3.6e-20 gi|194226439|ref|XP_001915472.1| PREDICTED: RAB11 ( 650) 656 105.4 1.3e-19 gi|73979205|ref|XP_857501.1| PREDICTED: similar to ( 649) 652 104.9 1.9e-19 gi|149541453|ref|XP_001519944.1| PREDICTED: simila (1348) 654 105.5 2.5e-19 gi|194679234|ref|XP_597040.3| PREDICTED: similar t ( 644) 647 104.2 3e-19 gi|74181553|dbj|BAE30042.1| unnamed protein produc ( 645) 642 103.5 4.9e-19 gi|116138490|gb|AAI25401.1| Rab11fip1 protein [Mus ( 645) 637 102.8 8e-19 gi|67472138|sp|Q9D620.1|RFIP1_MOUSE RecName: Full= ( 645) 637 102.8 8e-19 gi|97181130|sp|Q3B7T9.1|RFIP1_RAT RecName: Full=Ra ( 648) 613 99.4 8.4e-18 gi|189528321|ref|XP_699567.3| PREDICTED: similar t ( 503) 609 98.7 1e-17 gi|126304077|ref|XP_001381852.1| PREDICTED: simila (1290) 606 98.7 2.7e-17 gi|118101354|ref|XP_001233961.1| PREDICTED: hypoth ( 623) 597 97.1 3.9e-17 gi|63101551|gb|AAH94487.1| LOC432290 protein [Xeno ( 607) 587 95.7 1e-16 gi|47937658|gb|AAH72241.1| LOC432290 protein [Xeno ( 616) 587 95.7 1e-16 gi|134023869|gb|AAI35581.1| Rab11fip1 protein [Xen ( 601) 578 94.4 2.4e-16 gi|89273343|emb|CAJ81459.1| novel protein similar ( 996) 581 95.1 2.6e-16 gi|224080865|ref|XP_002194072.1| PREDICTED: simila ( 792) 529 87.7 3.5e-14 gi|148669882|gb|EDL01829.1| RAB11 family interacti ( 512) 509 84.6 1.8e-13 gi|223461132|gb|AAI39381.1| RAB11 family interacti ( 529) 509 84.7 1.9e-13 >>gi|162318388|gb|AAI56560.1| RAB11 family interacting p (1318 aa) initn: 8880 init1: 8880 opt: 8880 Z-score: 6761.6 bits: 1263.5 E(): 0 Smith-Waterman score: 8880; 100.000% identity (100.000% similar) in 1318 aa overlap (36-1353:1-1318) 10 20 30 40 50 60 mKIAA0 AVGALQAARGSRLLTASRGCHVCHSVPGSAMALVRDPEPAAGSSRWLPTHVQVTVLRASG :::::::::::::::::::::::::::::: gi|162 MALVRDPEPAAGSSRWLPTHVQVTVLRASG 10 20 30 70 80 90 100 110 120 mKIAA0 LRGKSSGAGSTSDAYTVIQVGREKYSTSVVEKTQGCPEWCEECSFELPPGALDGLLRAQE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|162 LRGKSSGAGSTSDAYTVIQVGREKYSTSVVEKTQGCPEWCEECSFELPPGALDGLLRAQE 40 50 60 70 80 90 130 140 150 160 170 180 mKIAA0 ADAGPAPWASGPNAACELVLTTMHRSLIGVDKFLGRATVALDEVFRAGRAQHTQWYRLHS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|162 ADAGPAPWASGPNAACELVLTTMHRSLIGVDKFLGRATVALDEVFRAGRAQHTQWYRLHS 100 110 120 130 140 150 190 200 210 220 230 240 mKIAA0 KPGKKEKERGEIQVTIQFTRNNLSASMFDLSMKDKPRSPFSKLKDRVKGKKKYDLESASA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|162 KPGKKEKERGEIQVTIQFTRNNLSASMFDLSMKDKPRSPFSKLKDRVKGKKKYDLESASA 160 170 180 190 200 210 250 260 270 280 290 300 mKIAA0 ILPSSALEDPELGSLGKMGKAKGFFLRNKLRKSSLTQSNTSLGSDSTLSSTSGSLVYQGP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|162 ILPSSALEDPELGSLGKMGKAKGFFLRNKLRKSSLTQSNTSLGSDSTLSSTSGSLVYQGP 220 230 240 250 260 270 310 320 330 340 350 360 mKIAA0 GAELLTRSPSHSSWLSTEGGRDSIQSPKLLTHKRTYSDEASQLRAAPPRALLELQGHLDG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|162 GAELLTRSPSHSSWLSTEGGRDSIQSPKLLTHKRTYSDEASQLRAAPPRALLELQGHLDG 280 290 300 310 320 330 370 380 390 400 410 420 mKIAA0 ASRSSLCVNGSHVYNEEPQPPLRHRSSISGPFPPSSSLHSVPPRSSEEGSRSSDDSWGRG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|162 ASRSSLCVNGSHVYNEEPQPPLRHRSSISGPFPPSSSLHSVPPRSSEEGSRSSDDSWGRG 340 350 360 370 380 390 430 440 450 460 470 480 mKIAA0 SHGTSSSEAVPGQEELSKQAKGASCSGEEEGARLPEGKPVQVATPMVASSEAVAAEKDRK :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|162 SHGTSSSEAVPGQEELSKQAKGASCSGEEEGARLPEGKPVQVATPMVASSEAVAAEKDRK 400 410 420 430 440 450 490 500 510 520 530 540 mKIAA0 PRMGLFHHHHHQGLSRSEQGRRGSVGEKGSPSLGASPHHSSTGEEKAKSSWFGLRESKEP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|162 PRMGLFHHHHHQGLSRSEQGRRGSVGEKGSPSLGASPHHSSTGEEKAKSSWFGLRESKEP 460 470 480 490 500 510 550 560 570 580 590 600 mKIAA0 TQKPSLDVSPQVESDPAAPHPCSPQALAPPPAPAAAPMLSTNLFAVTSPAAATAAAATIV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|162 TQKPSLDVSPQVESDPAAPHPCSPQALAPPPAPAAAPMLSTNLFAVTSPAAATAAAATIV 520 530 540 550 560 570 610 620 630 640 650 660 mKIAA0 LEATPSGFLGVTNPFLNSLQSNPFFEDLKADIALNSPSPAPSLPSASRASLAPLASPGKA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|162 LEATPSGFLGVTNPFLNSLQSNPFFEDLKADIALNSPSPAPSLPSASRASLAPLASPGKA 580 590 600 610 620 630 670 680 690 700 710 720 mKIAA0 LPEWDDTFNIFAAGRLQQEAGSGILAPAGMGLEEDGLQDPGPRTMAVKATEPQGEPGRGR :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|162 LPEWDDTFNIFAAGRLQQEAGSGILAPAGMGLEEDGLQDPGPRTMAVKATEPQGEPGRGR 640 650 660 670 680 690 730 740 750 760 770 780 mKIAA0 RGSNIWLEPKVSVDSELDQPSTSMSDPGPFGSSGSGPSSRASQLHLQASASTPDRELPAS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|162 RGSNIWLEPKVSVDSELDQPSTSMSDPGPFGSSGSGPSSRASQLHLQASASTPDRELPAS 700 710 720 730 740 750 790 800 810 820 830 840 mKIAA0 EGGAGQSPADSGASLFSSPEVLSVWERFPGSDDTPGGRDEEAPQDGSQLFQELNTVEDSW :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|162 EGGAGQSPADSGASLFSSPEVLSVWERFPGSDDTPGGRDEEAPQDGSQLFQELNTVEDSW 760 770 780 790 800 810 850 860 870 880 890 900 mKIAA0 PWDVITISPTAEVASPVMKGESDGVLSSQVQPESPDTVPPMGSEGLPALLEPEPEQGLDE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|162 PWDVITISPTAEVASPVMKGESDGVLSSQVQPESPDTVPPMGSEGLPALLEPEPEQGLDE 820 830 840 850 860 870 910 920 930 940 950 960 mKIAA0 GPWLGPPPPKPPRLFTPTNSQVEEEDKEEEENATGRQSSRGPGVEKDSTPRALAIGPQES :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|162 GPWLGPPPPKPPRLFTPTNSQVEEEDKEEEENATGRQSSRGPGVEKDSTPRALAIGPQES 880 890 900 910 920 930 970 980 990 1000 1010 1020 mKIAA0 KEEWVNPELEKLHRLPSGTLIGKPELEDPVGETSSPVFGDCPPRPTSCPEGPVPRPHNSI :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|162 KEEWVNPELEKLHRLPSGTLIGKPELEDPVGETSSPVFGDCPPRPTSCPEGPVPRPHNSI 940 950 960 970 980 990 1030 1040 1050 1060 1070 1080 mKIAA0 SSTLLSQKVLGTSETEEGFETKSQELAKEGFGPLSVPSQQSSMRAKEEEEGEEEEEEGEE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|162 SSTLLSQKVLGTSETEEGFETKSQELAKEGFGPLSVPSQQSSMRAKEEEEGEEEEEEGEE 1000 1010 1020 1030 1040 1050 1090 1100 1110 1120 1130 1140 mKIAA0 EEALETSNSFLCQESQDPPSFPSISPPGSRGSSIHSGPEELPTPPEPAFPPPPLPPWASH :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|162 EEALETSNSFLCQESQDPPSFPSISPPGSRGSSIHSGPEELPTPPEPAFPPPPLPPWASH 1060 1070 1080 1090 1100 1110 1150 1160 1170 1180 1190 1200 mKIAA0 RHGVPGPPCPPLPIAWPLTSSSSPPEESASPLGPPELSPTGGSPTSYGEDHAAATPASPL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|162 RHGVPGPPCPPLPIAWPLTSSSSPPEESASPLGPPELSPTGGSPTSYGEDHAAATPASPL 1120 1130 1140 1150 1160 1170 1210 1220 1230 1240 1250 1260 mKIAA0 VLLPLETRPAEEPQPSGSPHPVKPLTAAPVEASPDRKQPRTSLSTALSSGLERLKTVTSG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|162 VLLPLETRPAEEPQPSGSPHPVKPLTAAPVEASPDRKQPRTSLSTALSSGLERLKTVTSG 1180 1190 1200 1210 1220 1230 1270 1280 1290 1300 1310 1320 mKIAA0 GIQSVLPASQLGSSVDTKRPKDSAVLDQSAKYYHLTHDELIGLLLQRERELSQRDEHVQE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|162 GIQSVLPASQLGSSVDTKRPKDSAVLDQSAKYYHLTHDELIGLLLQRERELSQRDEHVQE 1240 1250 1260 1270 1280 1290 1330 1340 1350 mKIAA0 LESYIDRLLVRIMETSPTLLQISPGPPK :::::::::::::::::::::::::::: gi|162 LESYIDRLLVRIMETSPTLLQISPGPPK 1300 1310 >>gi|109473811|ref|XP_001073801.1| PREDICTED: similar to (1317 aa) initn: 5501 init1: 2388 opt: 8050 Z-score: 6130.2 bits: 1146.6 E(): 0 Smith-Waterman score: 8050; 92.000% identity (95.472% similar) in 1325 aa overlap (36-1353:1-1317) 10 20 30 40 50 60 mKIAA0 AVGALQAARGSRLLTASRGCHVCHSVPGSAMALVRDPEPAAGSSRWLPTHVQVTVLRASG :::::: ::::::::::::::::::::::: gi|109 MALVRDDEPAAGSSRWLPTHVQVTVLRASG 10 20 30 70 80 90 100 110 120 mKIAA0 LRGKSSGAGSTSDAYTVIQVGREKYSTSVVEKTQGCPEWCEECSFELPPGALDGLLRAQE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|109 LRGKSSGAGSTSDAYTVIQVGREKYSTSVVEKTQGCPEWCEECSFELPPGALDGLLRAQE 40 50 60 70 80 90 130 140 150 160 170 180 mKIAA0 ADAGPAPWASGPNAACELVLTTMHRSLIGVDKFLGRATVALDEVFRAGRAQHTQWYRLHS .:::::::::::::::::::::::::::::::::::::::::::::::::::::::.::: gi|109 TDAGPAPWASGPNAACELVLTTMHRSLIGVDKFLGRATVALDEVFRAGRAQHTQWYKLHS 100 110 120 130 140 150 190 200 210 220 230 240 mKIAA0 KPGKKEKERGEIQVTIQFTRNNLSASMFDLSMKDKPRSPFSKLKDRVKGKKKYDLESASA :::::::::::::::::::::::::::::::::::::::::::::.:::::::::::::: gi|109 KPGKKEKERGEIQVTIQFTRNNLSASMFDLSMKDKPRSPFSKLKDKVKGKKKYDLESASA 160 170 180 190 200 210 250 260 270 280 290 300 mKIAA0 ILPSSALEDPELGSLGKMGKAKGFFLRNKLRKSSLTQSNTSLGSDSTLSSTSGSLVYQGP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|109 ILPSSALEDPELGSLGKMGKAKGFFLRNKLRKSSLTQSNTSLGSDSTLSSTSGSLVYQGP 220 230 240 250 260 270 310 320 330 340 350 360 mKIAA0 GAELLTRSPSHSSWLSTEGGRDSIQSPKLLTHKRTYSDEASQLRAAPPRALLELQGHLDG :::::::::::::::.::.::::::::::::::::::::::::::::::::::::::::: gi|109 GAELLTRSPSHSSWLATEAGRDSIQSPKLLTHKRTYSDEASQLRAAPPRALLELQGHLDG 280 290 300 310 320 330 370 380 390 400 410 420 mKIAA0 ASRSSLCVNGSHVYNEEPQPPLRHRSSISGPFPPSSSLHSVPPRSSEEGSRSSDDSWGRG ::::::::::::::::::::::::::::::::: ::::::::::::::::::::::: :: gi|109 ASRSSLCVNGSHVYNEEPQPPLRHRSSISGPFP-SSSLHSVPPRSSEEGSRSSDDSWVRG 340 350 360 370 380 430 440 450 460 470 480 mKIAA0 SHGTSSSEAVPGQEELSKQAK----GASCSGEEEGARLPEGKPVQVATPMVASSEAVAAE :::::: ::::::::::::.: :::::.::::.: ::::::::::::::::::.::: gi|109 SHGTSSLEAVPGQEELSKQTKVLAPGASCSAEEEGTRPPEGKPVQVATPMVASSEAIAAE 390 400 410 420 430 440 490 500 510 520 530 540 mKIAA0 KDRKPRMGLFHHHHHQGLSRSEQGRRGSVGEKGSPSLGASPHHSSTGEEKAKSSWFGLRE :.::::::::::::::::::.: ::::::::::::::::::::::::::::::::::::: gi|109 KERKPRMGLFHHHHHQGLSRNEVGRRGSVGEKGSPSLGASPHHSSTGEEKAKSSWFGLRE 450 460 470 480 490 500 550 560 570 580 590 mKIAA0 SKEPTQKPSLDVSPQVESDPAAPHPCSPQALAPPPAPAAAPMLSTNLFAVTSPAAATA-- :::::::::::::::::::::::::: ::::.:::::::::::::::::..:::.::: gi|109 SKEPTQKPSLDVSPQVESDPAAPHPCFPQALVPPPAPAAAPMLSTNLFAAASPATATATA 510 520 530 540 550 560 600 610 620 630 640 650 mKIAA0 AAATIVLEATPSGFLGVTNPFLNSLQSNPFFEDLKADIALNSPSPAPSLPSASRASLAPL :::.::::::::::::::::::.::::::::::::::::::::::::::::::::::::: gi|109 AAANIVLEATPSGFLGVTNPFLTSLQSNPFFEDLKADIALNSPSPAPSLPSASRASLAPL 570 580 590 600 610 620 660 670 680 690 700 710 mKIAA0 ASPGKALPEWDDTFNIFAAGRLQQEAGSGILAPAGMGLEEDGLQDPGPRTMAVKATEPQG ::::::::::::.::::::::::.::::::::::::::::::::::::::.::::::::: gi|109 ASPGKALPEWDDNFNIFAAGRLQSEAGSGILAPAGMGLEEDGLQDPGPRTLAVKATEPQG 630 640 650 660 670 680 720 730 740 750 760 770 mKIAA0 EPGRGRRGSNIWLEPKVSVDSELDQPSTSMSDPGPFGSSGSGPSSRASQLHLQASASTPD ::: :: ::. :::::. ::: :::::::::::::.::::.::::::.:::::::::::: gi|109 EPGGGRGGSSTWLEPKAPVDSVLDQPSTSMSDPGPLGSSGTGPSSRAAQLHLQASASTPD 690 700 710 720 730 740 780 790 800 810 820 830 mKIAA0 RELPASEGGAGQSPADSGASLFSSPEVLSVWERFPGSDDTPGGRDEEAPQDGSQLFQELN ::::::::::::::::::::::::::::::::::::::::::: .::: ::::::::::: gi|109 RELPASEGGAGQSPADSGASLFSSPEVLSVWERFPGSDDTPGGLEEEAAQDGSQLFQELN 750 760 770 780 790 800 840 850 860 870 880 890 mKIAA0 TVEDSWPWDVITISPTAEVASPVMKGESDGVLSSQVQPESPDTVPPMGSEGLPAL-LEPE ::::::::::::::::::.::::::::: :::::::::: :::::::::::::.: :::: gi|109 TVEDSWPWDVITISPTAEAASPVMKGESKGVLSSQVQPEYPDTVPPMGSEGLPSLQLEPE 810 820 830 840 850 860 900 910 920 930 940 950 mKIAA0 PEQGLDEGPWLGPPPPKPPRLFTPTNSQVEEEDKEEEENATGRQSSRGPGVEKDSTPRAL ::::::::::::::::::::::::::::::: :::::::::: :::::::: :::: :: gi|109 PEQGLDEGPWLGPPPPKPPRLFTPTNSQVEE-DKEEEENATGGPSSRGPGVE-DSTPSAL 870 880 890 900 910 920 960 970 980 990 1000 1010 mKIAA0 AIGPQESKEEWVNPELEKLHRLPSGTLIGKPELEDPVGETSSPVFGDCPPRPTSCPEGPV .::: ::::: :: :::.:::::::::::.::::: ::::::: :: ::::::::::. gi|109 VIGPPESKEEGVNSELEELHRLPSGTLIGEPELEDVVGETSSPGSRDCLPRPTSCPEGPI 930 940 950 960 970 980 1020 1030 1040 1050 1060 1070 mKIAA0 PRPHNSISSTLLSQKVLGTSETEEGFETKSQELAKEGFGPLSVPSQQSSMRAKEEEEGEE :: ::: :::::::: :::::.:.:::.:::::::::: :::::::... .:.:: :: gi|109 PRSHNSASSTLLSQKDWGTSETDESFETQSQELAKEGFGALSVPSQQADLWVKKEE--EE 990 1000 1010 1020 1030 1040 1080 1090 1100 1110 1120 1130 mKIAA0 EEEEGEEEEALETSNSFLCQESQDPPSFPSISPPGSRGSSIHSGPEELPTPPEPAFPPPP ::.:.:::: :.:: : ::::::: :.:: ::::::::: ::::::::::::::::::: gi|109 EEKEAEEEEEEEASNPFSCQESQDPLSLPSTSPPGSRGSSTHSGPEELPTPPEPAFPPPP 1050 1060 1070 1080 1090 1100 1140 1150 1160 1170 1180 1190 mKIAA0 LPPWASHRHGVPGPPCPPLPIAWPLTSSSSPPEESASPLGPPELSPTGGSPTSYGEDHAA :::::::::::::::::::::::::::::: ::::: :: :::::::::: ::::::: gi|109 LPPWASHRHGVPGPPCPPLPIAWPLTSSSSLPEESACPL---ELSPTGGSPTPYGEDHAA 1110 1120 1130 1140 1150 1160 1200 1210 1220 1230 1240 1250 mKIAA0 ATPASPLVLLPLETRPAEEPQPSGSPHPVKPLTAAPVEASPDRKQPRTSLSTALSSGLER ::::::::::::::::::.:::::::::::::::::::::::::: :::::::::::::: gi|109 ATPASPLVLLPLETRPAEDPQPSGSPHPVKPLTAAPVEASPDRKQSRTSLSTALSSGLER 1170 1180 1190 1200 1210 1220 1260 1270 1280 1290 1300 1310 mKIAA0 LKTVTSGGIQSVLPASQLGSSVDTKRPKDSAVLDQSAKYYHLTHDELIGLLLQRERELSQ ::::::::::::::::::::.::::: ::::::::::::::::::::::::::::::::: gi|109 LKTVTSGGIQSVLPASQLGSTVDTKRLKDSAVLDQSAKYYHLTHDELIGLLLQRERELSQ 1230 1240 1250 1260 1270 1280 1320 1330 1340 1350 mKIAA0 RDEHVQELESYIDRLLVRIMETSPTLLQISPGPPK ::::::::::::::::::::::::::::::::: : gi|109 RDEHVQELESYIDRLLVRIMETSPTLLQISPGPSK 1290 1300 1310 >>gi|73981000|ref|XP_540231.2| PREDICTED: similar to RAB (1325 aa) initn: 4318 init1: 2409 opt: 4038 Z-score: 3077.8 bits: 581.9 E(): 9.9e-163 Smith-Waterman score: 6140; 72.727% identity (83.149% similar) in 1353 aa overlap (36-1353:1-1325) 10 20 30 40 50 60 mKIAA0 AVGALQAARGSRLLTASRGCHVCHSVPGSAMALVRDPEPAAGSSRWLPTHVQVTVLRASG ::::: ::: : ::::::::::::::: : gi|739 MALVRGAEPAPGPSRWLPTHVQVTVLRARG 10 20 30 70 80 90 100 110 120 mKIAA0 LRGKSSGAGSTSDAYTVIQVGREKYSTSVVEKTQGCPEWCEECSFELPPGALDGLLRAQE ::::::::::::::::::::::::::::::::: ::::: :::::::::::::::::::: gi|739 LRGKSSGAGSTSDAYTVIQVGREKYSTSVVEKTPGCPEWREECSFELPPGALDGLLRAQE 40 50 60 70 80 90 130 140 150 160 170 180 mKIAA0 ADAGPAPWASGPNAACELVLTTMHRSLIGVDKFLGRATVALDEVFRAGRAQHTQWYRLHS :::: ::::.: ::::::::::::::::::::::.::::::::: ::::::::::.::: gi|739 ADAGSAPWAAGSAAACELVLTTMHRSLIGVDKFLGQATVALDEVFGAGRAQHTQWYKLHS 100 110 120 130 140 150 190 200 210 220 230 240 mKIAA0 KPGKKEKERGEIQVTIQFTRNNLSASMFDLSMKDKPRSPFSKLKDRVKGKKKYDLESASA : ::::::::::::::::::::::::::::::::::::::::.::..:::::.::::::: gi|739 KAGKKEKERGEIQVTIQFTRNNLSASMFDLSMKDKPRSPFSKIKDKMKGKKKFDLESASA 160 170 180 190 200 210 250 260 270 280 290 300 mKIAA0 ILPSSALEDPELGSLGKMGKAKGFFLRNKLRKSSLTQSNTSLGSDSTLSSTSGSLVYQGP ::::::::::::::::::::::::::::::::::::::::::::::::::.::::.:::: gi|739 ILPSSALEDPELGSLGKMGKAKGFFLRNKLRKSSLTQSNTSLGSDSTLSSASGSLAYQGP 220 230 240 250 260 270 310 320 330 340 350 360 mKIAA0 GAELLTRSPSHSSWLSTEGGRDSIQSPKLLTHKRTYSDEASQLRAAPPRALLELQGHLDG :.::::.:::.:::::::::::: ::::::::::::::::::.:.::::.::.::::::. gi|739 GTELLTHSPSRSSWLSTEGGRDSTQSPKLLTHKRTYSDEASQMRVAPPRSLLDLQGHLDA 280 290 300 310 320 330 370 380 390 400 410 420 mKIAA0 ASRSSLCVNGSHVYNEEPQPPLRHRSSISGPFPPSSSLHSVPPRSSEEGSRSSDDSWGRG ::::::::::::.:::::: ::::::::::::::::::::: : .::::: .::: ::: gi|739 ASRSSLCVNGSHIYNEEPQAPLRHRSSISGPFPPSSSLHSVSFRPAEEGSRPTDDSGGRG 340 350 360 370 380 390 430 440 450 460 470 480 mKIAA0 SHGTSSSEAVPGQEELSKQAK----GASCSGEEEGARLPEGKPVQVATPMVASSEAVAAE :..::::: .:::::::.::: :.: ::::::::::::::::::::.:::::.:: . gi|739 SRSTSSSEMLPGQEELSSQAKVLATGTSRSGEEEGARLPEGKPVQVATPLVASSESVAEK 400 410 420 430 440 450 490 500 510 520 530 mKIAA0 K-----DRKPRMGLFHHHHHQGLSRSEQGRRGSVGEKGSPSLGASPHHSSTGEEKAKSSW . .:::::::::::: ::::::: :::::.::::.:. :::::::: ::::::::: gi|739 EGARKEERKPRMGLFHHHH-QGLSRSELGRRGSLGEKGGPTQGASPHHSSGGEEKAKSSW 460 470 480 490 500 540 550 560 570 580 590 mKIAA0 FGLRESKEPTQKPSLDVSPQVESDPAA-PH--PCSPQA-LAPPPAPAAAPMLSTNLFAVT :::::.:::::::::::::::: :::: :: :::: : . : :::.:::::::::::.. gi|739 FGLREAKEPTQKPSLDVSPQVEPDPAALPHHLPCSPCAPVLPTPAPTAAPMLSTNLFAAA 510 520 530 540 550 560 600 610 620 630 640 650 mKIAA0 SPAAATAAAATIVL-EATPSGFLGVTNPFLNSLQSNPFFEDLKADIALNSPSPAPSLPSA ::::::::::. . :::::::::.:::::.:.:::::::.: ::::::::::::::::: gi|739 SPAAATAAAASAAAPEATPSGFLGLTNPFLTSMQSNPFFEELLADIALNSPSPAPSLPSA 570 580 590 600 610 620 660 670 680 690 700 710 mKIAA0 SRASLAPLASPGKALPEWDDTFNIFAAGRLQQEAGSGILAPAG-MGLEEDGLQDPGPRTM :::: .:::::::: :::.::::.:::.::. :: : :::::: .::: :::. : .: gi|739 SRASPTPLASPGKAPPEWEDTFNVFAASRLRPEARSKILAPAGGVGLEVTGLQEQGRGVM 630 640 650 660 670 680 720 730 740 750 760 mKIAA0 AVKATEPQGEPGRGRRG-SNIWLEPKVSVDSELDQPSTSMSDPGPFGSSGSGPSSRASQL .:::.::.:.:: : :: :.. :::.. .: ::. :.:..::::.:: : : ..: gi|739 TVKASEPRGDPGGGGRGGSSVRLEPRMPLDLGLDRQSSSVADPGPLGSVGPILPSTSAQQ 690 700 710 720 730 740 770 780 790 800 810 820 mKIAA0 HLQASASTPDRELPASEGGAGQSPADSGASLFSSPEVLSVWERFPGSDDTPGGRDEEAPQ ::.:: : ::: :: : ::::::::..::::::::.:::::.::.:::: :. ::: : gi|739 HLRASDSEADREPPAPGGEAGQSPADSATSLFSSPEVISVWERLPGTDDTPEGQ-EEASQ 750 760 770 780 790 800 830 840 850 860 870 880 mKIAA0 DGSQLFQELNTVEDSWPWDVITISPTAEVASPVMKGESDGVLSSQVQPESPDTVPPMGSE .::..:::::::::::::.::::.::..: :..:::: . :.:::::. : : ::: gi|739 GEGQLLHELNTVEDSWPWDVVTISPAAEMSSLVLRGESDELPPPQMQPESPEPVSPRGSE 810 820 830 840 850 860 890 900 910 920 930 mKIAA0 GLPAL-LEPEPEQGL------------DEGPWLGPPPPKPPRLFTPTNSQVEEEDKEEEE : : : :::::: : :.:: . :::::::::::..:: .:::. gi|739 GPPPLKLEPEPEPELEPEAKSKPEQVSDRGPQPSRPPPKPPRLFTPSDSQEKEEDEAAAV 870 880 890 900 910 920 940 950 960 970 980 990 mKIAA0 -NATGRQSSRGP--GVEKDSTPRALAIGPQESKEEWVNPELEKLHRLPSGTLIGKPELED :.: ::: : : :. : .:. ::::..:: .: :. ::::.: : ::: gi|739 VAAAGGLRSRGAETGGE-DDLPSTLVAGPQEAEEEGETPGSES-DSHSSGTLLGGPGLED 930 940 950 960 970 980 1000 1010 1020 1030 1040 1050 mKIAA0 PVGETSSPVFGDCPPRPTSCPEGPVPRPHNSISSTLLSQKVLGT---SETEEGFETKSQE : : :: : ::.:::::.::: : . ::.. :. .:. :: .:. : gi|739 VVEGISPPVSGPSLSLPTGCPEGPTPRPSYSKLLAPQSQQIWGAPEKGESPEGPDTQIQG 990 1000 1010 1020 1030 1040 1060 1070 1080 1090 1100 1110 mKIAA0 LAKEGFGPLSVPSQQSSMRAKEEEEGEEEEEEGEEEEALETSNSFLCQESQDPPSFPSIS . ::. : ::.... .. ::.:: : :: :.::::::.: : gi|739 PVGEGLESLPGSSQHTGLCTS-------------EEDAL---NPFLSQRSQDPPSLPFTS 1050 1060 1070 1080 1090 1120 1130 1140 1150 1160 1170 mKIAA0 PPGSRGSSIHSGPEELPTPPEPAFPPPPLPPWASHRHGVPGPPCPPLPIAWPLTSSSSPP ::::: ::: ::::::::::::::::::::::::: :: :.::: ::: : :::::: : gi|739 PPGSRDSSIVSGPEELPTPPEPAFPPPPLPPWASHCHGGPSPPCSPLPGARPLTSSS--P 1100 1110 1120 1130 1140 1180 1190 1200 1210 1220 1230 mKIAA0 EESASPLGPPELSPTGGSPTSYGEDHAAATPASPLVLLPLETRPAEEPQPSGSPHPVKPL :: : :: ::::. ::::::. ::::::::::::: ::::: :.:::::::: gi|739 T-----LGEPASSP-GGSPAPLGEDHAATIPASPLVLLPLETRLAEEPQSSASPHPVKPL 1150 1160 1170 1180 1190 1200 1240 1250 1260 1270 1280 1290 mKIAA0 TAAPVEASPDRKQPRTSLSTALSSGLERLKTVTSGGIQSVLPASQLGSSVDTKRPKDSAV .:: .:.:::.:: :.:::::::::::.:::::::..: : :: ..:..::::: :::.: gi|739 SAASLEGSPDKKQSRSSLSTALSSGLEKLKTVTSGSVQPVAPAPHVGQTVDTKRLKDSGV 1210 1220 1230 1240 1250 1260 1300 1310 1320 1330 1340 1350 mKIAA0 LDQSAKYYHLTHDELIGLLLQRERELSQRDEHVQELESYIDRLLVRIMETSPTLLQISPG ::::::::::::::::.:::::::::::::::::::::::::::::::::::::::: : gi|739 LDQSAKYYHLTHDELISLLLQRERELSQRDEHVQELESYIDRLLVRIMETSPTLLQIPPD 1270 1280 1290 1300 1310 1320 mKIAA0 PPK ::: gi|739 PPK >>gi|34222919|sp|Q8R361.2|RFIP5_MOUSE RecName: Full=Rab1 (645 aa) initn: 3492 init1: 3428 opt: 3446 Z-score: 2631.3 bits: 498.2 E(): 7.4e-138 Smith-Waterman score: 3446; 92.042% identity (94.637% similar) in 578 aa overlap (36-612:1-569) 10 20 30 40 50 60 mKIAA0 AVGALQAARGSRLLTASRGCHVCHSVPGSAMALVRDPEPAAGSSRWLPTHVQVTVLRASG :::::::::::::::::::::::::::::: gi|342 MALVRDPEPAAGSSRWLPTHVQVTVLRASG 10 20 30 70 80 90 100 110 120 mKIAA0 LRGKSSGAGSTSDAYTVIQVGREKYSTSVVEKTQGCPEWCEECSFELPPGALDGLLRAQE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|342 LRGKSSGAGSTSDAYTVIQVGREKYSTSVVEKTQGCPEWCEECSFELPPGALDGLLRAQE 40 50 60 70 80 90 130 140 150 160 170 180 mKIAA0 ADAGPAPWASGPNAACELVLTTMHRSLIGVDKFLGRATVALDEVFRAGRAQHTQWYRLHS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|342 ADAGPAPWASGPNAACELVLTTMHRSLIGVDKFLGRATVALDEVFRAGRAQHTQWYRLHS 100 110 120 130 140 150 190 200 210 220 230 240 mKIAA0 KPGKKEKERGEIQVTIQFTRNNLSASMFDLSMKDKPRSPFSKLKDRVKGKKKYDLESASA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|342 KPGKKEKERGEIQVTIQFTRNNLSASMFDLSMKDKPRSPFSKLKDRVKGKKKYDLESASA 160 170 180 190 200 210 250 260 270 280 290 300 mKIAA0 ILPSSALEDPELGSLGKMGKAKGFFLRNKLRKSSLTQSNTSLGSDSTLSSTSGSLVYQGP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|342 ILPSSALEDPELGSLGKMGKAKGFFLRNKLRKSSLTQSNTSLGSDSTLSSTSGSLVYQGP 220 230 240 250 260 270 310 320 330 340 350 360 mKIAA0 GAELLTRSPSHSSWLSTEGGRDSIQSPKLLTHKRTYSDEASQLRAAPPRALLELQGHLDG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|342 GAELLTRSPSHSSWLSTEGGRDSIQSPKLLTHKRTYSDEASQLRAAPPRALLELQGHLDG 280 290 300 310 320 330 370 380 390 400 410 420 mKIAA0 ASRSSLCVNGSHVYNEEPQPPLRHRSSISGPFPPSSSLHSVPPRSSEEGSRSSDDSWGRG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|342 ASRSSLCVNGSHVYNEEPQPPLRHRSSISGPFPPSSSLHSVPPRSSEEGSRSSDDSWGRG 340 350 360 370 380 390 430 440 450 460 470 480 mKIAA0 SHGTSSSEAVPGQEELSKQAKGASCSGEEEGARLPEGKPVQVATPMVASSEAVAAEKDRK :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|342 SHGTSSSEAVPGQEELSKQAKGASCSGEEEGARLPEGKPVQVATPMVASSEAVAAEKDRK 400 410 420 430 440 450 490 500 510 520 530 540 mKIAA0 PRMGLFHHHHHQGLSRSEQGRRGSVGEKGSPSLGASPHHSSTGEEKAKSSWFGLRESKEP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|342 PRMGLFHHHHHQGLSRSEQGRRGSVGEKGSPSLGASPHHSSTGEEKAKSSWFGLRESKEP 460 470 480 490 500 510 550 560 570 580 590 600 mKIAA0 TQKPSLDVSPQ-VESDPAAPHPCSPQALAPPPAPAAAPMLSTNLFAVTSPAAATAAAATI ::::: :. :. ::: ::. : . ..: ::..: . . .:... gi|342 TQKPS----PHPVKPLTAAPVEASPDRKQPRTSLSTA--LSSGLERLKT---VTSGGIQS 520 530 540 550 560 610 620 630 640 650 660 mKIAA0 VLEATPSGFLGVTNPFLNSLQSNPFFEDLKADIALNSPSPAPSLPSASRASLAPLASPGK :: :. : gi|342 VLPASQLGSSVDTKRPKDSAVLDQSAKYYHLTHDELIGLLLQRERELSQRDEHVQELESY 570 580 590 600 610 620 >>gi|148666709|gb|EDK99125.1| RAB11 family interacting p (623 aa) initn: 3337 init1: 3273 opt: 3291 Z-score: 2513.6 bits: 476.4 E(): 2.7e-131 Smith-Waterman score: 3291; 91.727% identity (94.424% similar) in 556 aa overlap (58-612:1-547) 30 40 50 60 70 80 mKIAA0 CHSVPGSAMALVRDPEPAAGSSRWLPTHVQVTVLRASGLRGKSSGAGSTSDAYTVIQVGR :::::::::::::::::::::::::::::: gi|148 VTVLRASGLRGKSSGAGSTSDAYTVIQVGR 10 20 30 90 100 110 120 130 140 mKIAA0 EKYSTSVVEKTQGCPEWCEECSFELPPGALDGLLRAQEADAGPAPWASGPNAACELVLTT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|148 EKYSTSVVEKTQGCPEWCEECSFELPPGALDGLLRAQEADAGPAPWASGPNAACELVLTT 40 50 60 70 80 90 150 160 170 180 190 200 mKIAA0 MHRSLIGVDKFLGRATVALDEVFRAGRAQHTQWYRLHSKPGKKEKERGEIQVTIQFTRNN :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|148 MHRSLIGVDKFLGRATVALDEVFRAGRAQHTQWYRLHSKPGKKEKERGEIQVTIQFTRNN 100 110 120 130 140 150 210 220 230 240 250 260 mKIAA0 LSASMFDLSMKDKPRSPFSKLKDRVKGKKKYDLESASAILPSSALEDPELGSLGKMGKAK :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|148 LSASMFDLSMKDKPRSPFSKLKDRVKGKKKYDLESASAILPSSALEDPELGSLGKMGKAK 160 170 180 190 200 210 270 280 290 300 310 320 mKIAA0 GFFLRNKLRKSSLTQSNTSLGSDSTLSSTSGSLVYQGPGAELLTRSPSHSSWLSTEGGRD :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|148 GFFLRNKLRKSSLTQSNTSLGSDSTLSSTSGSLVYQGPGAELLTRSPSHSSWLSTEGGRD 220 230 240 250 260 270 330 340 350 360 370 380 mKIAA0 SIQSPKLLTHKRTYSDEASQLRAAPPRALLELQGHLDGASRSSLCVNGSHVYNEEPQPPL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|148 SIQSPKLLTHKRTYSDEASQLRAAPPRALLELQGHLDGASRSSLCVNGSHVYNEEPQPPL 280 290 300 310 320 330 390 400 410 420 430 440 mKIAA0 RHRSSISGPFPPSSSLHSVPPRSSEEGSRSSDDSWGRGSHGTSSSEAVPGQEELSKQAKG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|148 RHRSSISGPFPPSSSLHSVPPRSSEEGSRSSDDSWGRGSHGTSSSEAVPGQEELSKQAKG 340 350 360 370 380 390 450 460 470 480 490 500 mKIAA0 ASCSGEEEGARLPEGKPVQVATPMVASSEAVAAEKDRKPRMGLFHHHHHQGLSRSEQGRR :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|148 ASCSGEEEGARLPEGKPVQVATPMVASSEAVAAEKDRKPRMGLFHHHHHQGLSRSEQGRR 400 410 420 430 440 450 510 520 530 540 550 560 mKIAA0 GSVGEKGSPSLGASPHHSSTGEEKAKSSWFGLRESKEPTQKPSLDVSPQ-VESDPAAPHP ::::::::::::::::::::::::::::::::::::::::::: :. :. ::: gi|148 GSVGEKGSPSLGASPHHSSTGEEKAKSSWFGLRESKEPTQKPS----PHPVKPLTAAPVE 460 470 480 490 500 570 580 590 600 610 620 mKIAA0 CSPQALAPPPAPAAAPMLSTNLFAVTSPAAATAAAATIVLEATPSGFLGVTNPFLNSLQS ::. : . ..: ::..: . . .:... :: :. : gi|148 ASPDRKQPRTSLSTA--LSSGLERLKT---VTSGGIQSVLPASQLGSSVDTKRPKDSAVL 510 520 530 540 550 560 630 640 650 660 670 680 mKIAA0 NPFFEDLKADIALNSPSPAPSLPSASRASLAPLASPGKALPEWDDTFNIFAAGRLQQEAG gi|148 DQSAKYYHLTHDELIGLLLQRERELSQRDEHVQELESYIDRLLVRIMETSPTLLQISPGP 570 580 590 600 610 620 >>gi|119903259|ref|XP_616110.3| PREDICTED: similar to RA (653 aa) initn: 3257 init1: 2421 opt: 2940 Z-score: 2246.3 bits: 427.0 E(): 2.1e-116 Smith-Waterman score: 2984; 82.332% identity (88.693% similar) in 566 aa overlap (36-588:1-552) 10 20 30 40 50 60 mKIAA0 AVGALQAARGSRLLTASRGCHVCHSVPGSAMALVRDPEPAAGSSRWLPTHVQVTVLRASG ::::: ::::: ::::::::::::::: : gi|119 MALVRGAEPAAGPSRWLPTHVQVTVLRARG 10 20 30 70 80 90 100 110 120 mKIAA0 LRGKSSGAGSTSDAYTVIQVGREKYSTSVVEKTQGCPEWCEECSFELPPGALDGLLRAQE ::::::::::::::::::::::::::::::::: ::::: :::::::::::::::::::: gi|119 LRGKSSGAGSTSDAYTVIQVGREKYSTSVVEKTPGCPEWREECSFELPPGALDGLLRAQE 40 50 60 70 80 90 130 140 150 160 170 180 mKIAA0 ADAGPAPWASGPNAACELVLTTMHRSLIGVDKFLGRATVALDEVFRAGRAQHTQWYRLHS :::::::::.: :::.::::::::::::::::::.::::::::: ::::::::::.::: gi|119 ADAGPAPWAAGSAAACQLVLTTMHRSLIGVDKFLGQATVALDEVFGAGRAQHTQWYKLHS 100 110 120 130 140 150 190 200 210 220 230 240 mKIAA0 KPGKKEKERGEIQVTIQFTRNNLSASMFDLSMKDKPRSPFSKLKDRVKGKKKYDLESASA : :::::::::::::::::::::::::::::.::::::::::.::..:::::.::::::: gi|119 KAGKKEKERGEIQVTIQFTRNNLSASMFDLSVKDKPRSPFSKIKDKMKGKKKFDLESASA 160 170 180 190 200 210 250 260 270 280 290 300 mKIAA0 ILPSSALEDPELGSLGKMGKAKGFFLRNKLRKSSLTQSNTSLGSDSTLSSTSGSLVYQGP ::::::::::::::::::::::::::::::::::::::::::::::::::.::::.:::: gi|119 ILPSSALEDPELGSLGKMGKAKGFFLRNKLRKSSLTQSNTSLGSDSTLSSASGSLAYQGP 220 230 240 250 260 270 310 320 330 340 350 360 mKIAA0 GAELLTRSPSHSSWLSTEGGRDSIQSPKLLTHKRTYSDEASQLRAAPPRALLELQGHLDG ::::::::::.:::::.:::::: ::::::::::::::::::.:::::::::.::::::: gi|119 GAELLTRSPSRSSWLSSEGGRDSAQSPKLLTHKRTYSDEASQMRAAPPRALLDLQGHLDG 280 290 300 310 320 330 370 380 390 400 410 420 mKIAA0 ASRSSLCVNGSHVYNEEPQPPLRHRSSISGPFPPSSSLHSVPPRSSEEGSRSSDDSWGRG ::::::::::::.::::: : :::::::::::::::::. : :::: ::.::::.:: gi|119 ASRSSLCVNGSHIYNEEPPAPPRHRSSISGPFPPSSSLHAGSSRPSEEGPRSADDSWARG 340 350 360 370 380 390 430 440 450 460 470 mKIAA0 SHGTSSSEAVPGQEELSKQAK----GASCSGEEEGARLPEGKPVQVATPMVASSEAVA-- :. :::::::::::::.: . :: :::::::: ::.::::.:::::::::.. gi|119 SRRPSSSEAVPGQEELSSQPRVLAVGARRSGEEEGARPSEGRPVQVTTPMVASSEAAVEK 400 410 420 430 440 450 480 490 500 510 520 530 mKIAA0 --AEKD-RKPRMGLFHHHHHQGLSRSEQGRRGSVGEKGSPSLGASPHHSSTGEEKAKSSW :.:: :::::::::::: :::::::.:::::.::::::.:::::::::.::::::::: gi|119 EGARKDERKPRMGLFHHHH-QGLSRSEMGRRGSLGEKGSPTLGASPHHSSSGEEKAKSSW 460 470 480 490 500 540 550 560 570 580 590 mKIAA0 FGLRESKEPTQKPSLDVSPQVESDPAAPHPCSPQALAP----PPAPAAAPMLSTNLFAVT :::::.:::.:::: ::: .: . :: : . ::: : gi|119 FGLREAKEPSQKPS-------------PHPVKPLSTAPVEGSPDRKQSRSSLSTALSSGL 510 520 530 540 550 600 610 620 630 640 650 mKIAA0 SPAAATAAAATIVLEATPSGFLGVTNPFLNSLQSNPFFEDLKADIALNSPSPAPSLPSAS gi|119 EKLKTVTSGSIQPVAPAPQVGQTADAKRLKDSGVLDQSAKYYHLTHDELIGLLLQREREL 560 570 580 590 600 610 >>gi|109103540|ref|XP_001103469.1| PREDICTED: similar to (966 aa) initn: 3204 init1: 2382 opt: 2911 Z-score: 2222.1 bits: 423.1 E(): 4.6e-115 Smith-Waterman score: 3002; 79.866% identity (88.087% similar) in 596 aa overlap (1-574:270-847) 10 20 mKIAA0 QPAAAAVGALQAARGSRLLTA-SRGCHVCH .:. : :. .:: ::.::: :: .::: gi|109 AGRGRGRGADVAARPPARGPVGRGGGGRSARPSPA--GSCGGAR-SRFLTAFCRG-RVCH 240 250 260 270 280 290 30 40 50 60 70 mKIAA0 SVPGSA------------MALVRDPEPAAGSSRWLPTHVQVTVLRASGLRGKSSGAGSTS .::::: ::::: ::::: ::::::::::::::: ::::::::::::: gi|109 QVPGSAPARPDFARRFPAMALVRGAEPAAGPSRWLPTHVQVTVLRARGLRGKSSGAGSTS 300 310 320 330 340 350 80 90 100 110 120 130 mKIAA0 DAYTVIQVGREKYSTSVVEKTQGCPEWCEECSFELPPGALDGLLRAQEADAGPAPWASGP :::::::::::::::::::::.::::: :::::::::::::::::::::::::::::.. gi|109 DAYTVIQVGREKYSTSVVEKTHGCPEWREECSFELPPGALDGLLRAQEADAGPAPWAASS 360 370 380 390 400 410 140 150 160 170 180 190 mKIAA0 NAACELVLTTMHRSLIGVDKFLGRATVALDEVFRAGRAQHTQWYRLHSKPGKKEKERGEI ::::::::::::::::::::::.::::::::: ::::::::::.::::::::::::::: gi|109 AAACELVLTTMHRSLIGVDKFLGQATVALDEVFGAGRAQHTQWYKLHSKPGKKEKERGEI 420 430 440 450 460 470 200 210 220 230 240 250 mKIAA0 QVTIQFTRNNLSASMFDLSMKDKPRSPFSKLKDRVKGKKKYDLESASAILPSSALEDPEL .:::::::::::::::::::::::::::::.::..:::::::::::::::::::.:::.: gi|109 EVTIQFTRNNLSASMFDLSMKDKPRSPFSKIKDKMKGKKKYDLESASAILPSSAIEDPDL 480 490 500 510 520 530 260 270 280 290 300 310 mKIAA0 GSLGKMGKAKGFFLRNKLRKSSLTQSNTSLGSDSTLSSTSGSLVYQGPGAELLTRSPSHS ::::::::::::::::::::::::::::::::::::::.::::.::::::::::::::.: gi|109 GSLGKMGKAKGFFLRNKLRKSSLTQSNTSLGSDSTLSSASGSLAYQGPGAELLTRSPSRS 540 550 560 570 580 590 320 330 340 350 360 370 mKIAA0 SWLSTEGGRDSIQSPKLLTHKRTYSDEASQLRAAPPRALLELQGHLDGASRSSLCVNGSH ::::::::::: :::::.::::::::::::.:.:::::::.::::::.:::::::::::: gi|109 SWLSTEGGRDSAQSPKLFTHKRTYSDEASQMRVAPPRALLDLQGHLDAASRSSLCVNGSH 600 610 620 630 640 650 380 390 400 410 420 430 mKIAA0 VYNEEPQPPLRHRSSISGPFPPSSSLHSVPPRSSEEGSRSSDDSWGRGSHGTSSSEAVPG .:::::: :.:::::::: .: :.::..: : :::: ::.:::: :::...:::::: : gi|109 IYNEEPQGPVRHRSSISGSLPSSGSLQAVSSRLSEEGPRSTDDSWPRGSRSNSSSEAVLG 660 670 680 690 700 710 440 450 460 470 480 mKIAA0 QEELSKQAK----GASCSGEEEGARLPEGKPVQVATPMVASSEAVAAEK-----DRKPRM ::: : ::: ::: :::::::::::::::::::.:::::::: .. .::::: gi|109 QEEPSAQAKVLAPGASHPGEEEGARLPEGKPVQVATPIVASSEAVAEKEGARKEERKPRM 720 730 740 750 760 770 490 500 510 520 530 540 mKIAA0 GLFHHHHHQGLSRSEQGRRGSVGEKGSPSLGASPHHSSTGEEKAKSSWFGLRESKEPTQK ::::::: ::::::: :::.:.::::.:.:::::::::.::::::::::::::.:.:::: gi|109 GLFHHHH-QGLSRSELGRRSSLGEKGGPTLGASPHHSSSGEEKAKSSWFGLREAKDPTQK 780 790 800 810 820 830 550 560 570 580 590 600 mKIAA0 PSLDVSPQVESDPAAPHPCSPQALAPPPAPAAAPMLSTNLFAVTSPAAATAAAATIVLEA :: ::: .: . :: gi|109 PS-------------PHPVKPLSAAPVEGSPDRKQSRSSLSIALSSGLEKLKTVTSGSIQ 840 850 860 870 880 >>gi|34223002|sp|Q9BXF6.1|RFIP5_HUMAN RecName: Full=Rab1 (653 aa) initn: 3198 init1: 2376 opt: 2900 Z-score: 2215.8 bits: 421.3 E(): 1e-114 Smith-Waterman score: 2944; 82.847% identity (90.876% similar) in 548 aa overlap (36-574:1-534) 10 20 30 40 50 60 mKIAA0 AVGALQAARGSRLLTASRGCHVCHSVPGSAMALVRDPEPAAGSSRWLPTHVQVTVLRASG ::::: ::::: ::::::::::::::: : gi|342 MALVRGAEPAAGPSRWLPTHVQVTVLRARG 10 20 30 70 80 90 100 110 120 mKIAA0 LRGKSSGAGSTSDAYTVIQVGREKYSTSVVEKTQGCPEWCEECSFELPPGALDGLLRAQE :::::::::::::::::::::::::::::::::.::::: :::::::::::::::::::: gi|342 LRGKSSGAGSTSDAYTVIQVGREKYSTSVVEKTHGCPEWREECSFELPPGALDGLLRAQE 40 50 60 70 80 90 130 140 150 160 170 180 mKIAA0 ADAGPAPWASGPNAACELVLTTMHRSLIGVDKFLGRATVALDEVFRAGRAQHTQWYRLHS :::::::::.. ::::::::::::::::::::::.::::::::: ::::::::::.::: gi|342 ADAGPAPWAASSAAACELVLTTMHRSLIGVDKFLGQATVALDEVFGAGRAQHTQWYKLHS 100 110 120 130 140 150 190 200 210 220 230 240 mKIAA0 KPGKKEKERGEIQVTIQFTRNNLSASMFDLSMKDKPRSPFSKLKDRVKGKKKYDLESASA ::::::::::::.:::::::::::::::::::::::::::::..:..::::::::::::: gi|342 KPGKKEKERGEIEVTIQFTRNNLSASMFDLSMKDKPRSPFSKIRDKMKGKKKYDLESASA 160 170 180 190 200 210 250 260 270 280 290 300 mKIAA0 ILPSSALEDPELGSLGKMGKAKGFFLRNKLRKSSLTQSNTSLGSDSTLSSTSGSLVYQGP ::::::.:::.:::::::::::::::::::::::::::::::::::::::.::::.:::: gi|342 ILPSSAIEDPDLGSLGKMGKAKGFFLRNKLRKSSLTQSNTSLGSDSTLSSASGSLAYQGP 220 230 240 250 260 270 310 320 330 340 350 360 mKIAA0 GAELLTRSPSHSSWLSTEGGRDSIQSPKLLTHKRTYSDEASQLRAAPPRALLELQGHLDG ::::::::::.:::::::::::: :::::.::::::::::.:.:.:::::::.::::::. gi|342 GAELLTRSPSRSSWLSTEGGRDSAQSPKLFTHKRTYSDEANQMRVAPPRALLDLQGHLDA 280 290 300 310 320 330 370 380 390 400 410 420 mKIAA0 ASRSSLCVNGSHVYNEEPQPPLRHRSSISGPFPPSSSLHSVPPRSSEEGSRSSDDSWGRG ::::::::::::.:::::: :.:::::::: .: :.::..: : :::: ::.::.: :: gi|342 ASRSSLCVNGSHIYNEEPQGPVRHRSSISGSLPSSGSLQAVSSRFSEEGPRSTDDTWPRG 340 350 360 370 380 390 430 440 450 460 470 480 mKIAA0 SHGTSSSEAVPGQEELSKQAK----GASCSGEEEGARLPEGKPVQVATPMVASSEAVAAE :...:::::: :::::: ::: ::: :::::::::::::::::::.:::::::: . gi|342 SRSNSSSEAVLGQEELSAQAKVLAPGASHPGEEEGARLPEGKPVQVATPIVASSEAVAEK 400 410 420 430 440 450 490 500 510 520 530 mKIAA0 K-----DRKPRMGLFHHHHHQGLSRSEQGRRGSVGEKGSPSLGASPHHSSTGEEKAKSSW . .:::::::::::: ::::::: :::.:.::::.: :::::::::.::::::::: gi|342 EGARKEERKPRMGLFHHHH-QGLSRSELGRRSSLGEKGGPILGASPHHSSSGEEKAKSSW 460 470 480 490 500 540 550 560 570 580 590 mKIAA0 FGLRESKEPTQKPSLDVSPQVESDPAAPHPCSPQALAPPPAPAAAPMLSTNLFAVTSPAA :::::.:.:::::: ::: .: . :: gi|342 FGLREAKDPTQKPS-------------PHPVKPLSAAPVEGSPDRKQSRSSLSIALSSGL 510 520 530 540 550 600 610 620 630 640 650 mKIAA0 ATAAAATIVLEATPSGFLGVTNPFLNSLQSNPFFEDLKADIALNSPSPAPSLPSASRASL gi|342 EKLKTVTSGSIQPVTQAPQAGQMVDTKRLKDSAVLDQSAKYYHLTHDELISLLLQREREL 560 570 580 590 600 610 >>gi|62630155|gb|AAX88900.1| unknown [Homo sapiens] (522 aa) initn: 2886 init1: 2376 opt: 2880 Z-score: 2201.8 bits: 418.4 E(): 6.2e-114 Smith-Waterman score: 2924; 85.468% identity (93.499% similar) in 523 aa overlap (36-549:1-522) 10 20 30 40 50 60 mKIAA0 AVGALQAARGSRLLTASRGCHVCHSVPGSAMALVRDPEPAAGSSRWLPTHVQVTVLRASG ::::: ::::: ::::::::::::::: : gi|626 MALVRGAEPAAGPSRWLPTHVQVTVLRARG 10 20 30 70 80 90 100 110 120 mKIAA0 LRGKSSGAGSTSDAYTVIQVGREKYSTSVVEKTQGCPEWCEECSFELPPGALDGLLRAQE :::::::::::::::::::::::::::::::::.::::: :::::::::::::::::::: gi|626 LRGKSSGAGSTSDAYTVIQVGREKYSTSVVEKTHGCPEWREECSFELPPGALDGLLRAQE 40 50 60 70 80 90 130 140 150 160 170 180 mKIAA0 ADAGPAPWASGPNAACELVLTTMHRSLIGVDKFLGRATVALDEVFRAGRAQHTQWYRLHS :::::::::.. ::::::::::::::::::::::.::::::::: ::::::::::.::: gi|626 ADAGPAPWAASSAAACELVLTTMHRSLIGVDKFLGQATVALDEVFGAGRAQHTQWYKLHS 100 110 120 130 140 150 190 200 210 220 230 240 mKIAA0 KPGKKEKERGEIQVTIQFTRNNLSASMFDLSMKDKPRSPFSKLKDRVKGKKKYDLESASA ::::::::::::.:::::::::::::::::::::::::::::..:..::::::::::::: gi|626 KPGKKEKERGEIEVTIQFTRNNLSASMFDLSMKDKPRSPFSKIRDKMKGKKKYDLESASA 160 170 180 190 200 210 250 260 270 280 290 300 mKIAA0 ILPSSALEDPELGSLGKMGKAKGFFLRNKLRKSSLTQSNTSLGSDSTLSSTSGSLVYQGP ::::::.:::.:::::::::::::::::::::::::::::::::::::::.::::.:::: gi|626 ILPSSAIEDPDLGSLGKMGKAKGFFLRNKLRKSSLTQSNTSLGSDSTLSSASGSLAYQGP 220 230 240 250 260 270 310 320 330 340 350 360 mKIAA0 GAELLTRSPSHSSWLSTEGGRDSIQSPKLLTHKRTYSDEASQLRAAPPRALLELQGHLDG ::::::::::.:::::::::::: :::::.::::::::::.:.:.:::::::.::::::. gi|626 GAELLTRSPSRSSWLSTEGGRDSAQSPKLFTHKRTYSDEANQMRVAPPRALLDLQGHLDA 280 290 300 310 320 330 370 380 390 400 410 420 mKIAA0 ASRSSLCVNGSHVYNEEPQPPLRHRSSISGPFPPSSSLHSVPPRSSEEGSRSSDDSWGRG ::::::::::::.:::::: :.:::::::: .: :.::..: : :::: ::.::.: :: gi|626 ASRSSLCVNGSHIYNEEPQGPVRHRSSISGSLPSSGSLQAVSSRFSEEGPRSTDDTWPRG 340 350 360 370 380 390 430 440 450 460 470 480 mKIAA0 SHGTSSSEAVPGQEELSKQAK----GASCSGEEEGARLPEGKPVQVATPMVASSEAVAAE :...:::::: :::::: ::: ::: :::::::::::::::::::.:::::::: . gi|626 SRSNSSSEAVLGQEELSAQAKVLAPGASHPGEEEGARLPEGKPVQVATPIVASSEAVAEK 400 410 420 430 440 450 490 500 510 520 530 mKIAA0 K-----DRKPRMGLFHHHHHQGLSRSEQGRRGSVGEKGSPSLGASPHHSSTGEEKAKSSW . .:::::::::::: ::::::: :::.:.::::.: :::::::::.::::::::: gi|626 EGARKEERKPRMGLFHHHH-QGLSRSELGRRSSLGEKGGPILGASPHHSSSGEEKAKSSW 460 470 480 490 500 540 550 560 570 580 590 mKIAA0 FGLRESKEPTQKPSLDVSPQVESDPAAPHPCSPQALAPPPAPAAAPMLSTNLFAVTSPAA :::::.:.::::: gi|626 FGLREAKDPTQKP 510 520 >>gi|194220613|ref|XP_001917193.1| PREDICTED: RAB11 fami (651 aa) initn: 3136 init1: 2289 opt: 2876 Z-score: 2197.6 bits: 418.0 E(): 1.1e-113 Smith-Waterman score: 2876; 79.038% identity (87.973% similar) in 582 aa overlap (36-605:1-574) 10 20 30 40 50 60 mKIAA0 AVGALQAARGSRLLTASRGCHVCHSVPGSAMALVRDPEPAAGSSRWLPTHVQVTVLRASG :...: : :..: :::::::::: :::: : gi|194 MGVARGP-PGGGCSRWLPTHVQVIVLRARG 10 20 70 80 90 100 110 120 mKIAA0 LRGKSSGAGSTSDAYTVIQVGREKYSTSVVEKTQGCPEWCEECSFELPPGALDGLLRAQE ::::::::::::::::::::::::::::::::: ::::: ::::::::::::::::::.: gi|194 LRGKSSGAGSTSDAYTVIQVGREKYSTSVVEKTPGCPEWREECSFELPPGALDGLLRAHE 30 40 50 60 70 80 130 140 150 160 170 180 mKIAA0 ADAGPAPWASGPNAACELVLTTMHRSLIGVDKFLGRATVALDEVFRAGRAQHTQWYRLHS ::: :::::. ::::::::::::::: :::.: .::::: ::: : :. :::::.::: gi|194 ADAIPAPWAALSAAACELVLTTMHRSLIFVDKILIQATVALYEVFVAHRGVHTQWYKLHS 90 100 110 120 130 140 190 200 210 220 230 240 mKIAA0 KPGKKEKERGEIQVTIQFTRNNLSASMFDLSMKDKPRSPFSKLKDRVKGKKKYDLESASA : ::::::::::::::::::::::::::::::::::::::::.::..:::::.::::::: gi|194 KSGKKEKERGEIQVTIQFTRNNLSASMFDLSMKDKPRSPFSKIKDKMKGKKKFDLESASA 150 160 170 180 190 200 250 260 270 280 290 300 mKIAA0 ILPSSALEDPELGSLGKMGKAKGFFLRNKLRKSSLTQSNTSLGSDSTLSSTSGSLVYQGP ::::::.:::::::::::::::::::::::::::::::::::::::::::.::::.:::: gi|194 ILPSSAVEDPELGSLGKMGKAKGFFLRNKLRKSSLTQSNTSLGSDSTLSSASGSLAYQGP 210 220 230 240 250 260 310 320 330 340 350 360 mKIAA0 GAELLTRSPSHSSWLSTEGGRDSIQSPKLLTHKRTYSDEASQLRAAPPRALLELQGHLDG ::::::::::.:::::::::::: ::::::::::::::::.:.:::::::::.::::.: gi|194 GAELLTRSPSRSSWLSTEGGRDSTQSPKLLTHKRTYSDEANQMRAAPPRALLDLQGHVDT 270 280 290 300 310 320 370 380 390 400 410 420 mKIAA0 ASRSSLCVNGSHVYNEEPQPPLRHRSSISGPFPPSSSLHSVPPRSSEEGSRSSDDSWGRG ::::::::::::.:::::: ::::::::::::::::::::: : :::. ::.::::::. gi|194 ASRSSLCVNGSHIYNEEPQGPLRHRSSISGPFPPSSSLHSVSSRPSEEAPRSADDSWGRS 330 340 350 360 370 380 430 440 450 460 470 480 mKIAA0 SHGTSSSEAVPGQEELSKQAK----GASCSGEEEGARLPEGKPVQVATPMVASSEAVAAE ...:::::..:::::::.::: ::: :::::::: ::::::::::::::: .: : gi|194 NRSTSSSEVAPGQEELSSQAKVLAIGASHSGEEEGARPPEGKPVQVATPMVASEAVVEKE 390 400 410 420 430 440 490 500 510 520 530 mKIAA0 ----KDRKPRMGLFHHHHHQGLSRSEQGRRGSVGEKGSPSLGASPHHSSTGEEKAKSSWF ..:::::::::::: :::::::.:::::.::::.:.:::::::::::::::::::: gi|194 GARKEERKPRMGLFHHHH-QGLSRSEMGRRGSLGEKGGPTLGASPHHSSTGEEKAKSSWF 450 460 470 480 490 500 540 550 560 570 580 590 mKIAA0 GLRESKEPTQKPSLDVSPQ-VESDPAAPHPCSPQALAPPPAPAAAPMLSTNLF---AVTS :::: :::::::: :. :. ::: ::. : . ..: ::..: .::: gi|194 GLREPKEPTQKPS----PHPVKPLSAAPVEGSPDRKQPRSSLSTA--LSSGLEKLKTVTS 510 520 530 540 550 560 600 610 620 630 640 650 mKIAA0 PAAATAAAATIVLEATPSGFLGVTNPFLNSLQSNPFFEDLKADIALNSPSPAPSLPSASR .. .: : : gi|194 GSVQPVAPAPQVGQTVDTKRLKDSGVLDQSAKYYHLTHDELIGLLLQRERELSQRDEHVQ 570 580 590 600 610 620 1353 residues in 1 query sequences 2727779818 residues in 7921681 library sequences Tcomplib [34.26] (2 proc) start: Mon Mar 16 19:09:42 2009 done: Mon Mar 16 19:20:07 2009 Total Scan time: 1344.320 Total Display time: 0.520 Function used was FASTA [version 34.26.5 April 26, 2007]