# /usr/local/bin/fasta34_t -T 4 -b50 -d10 -E0.01 -H -O./tmp/mpf00136.fasta.nr -Q ../query/mKIAA0857.ptfa /cdna4/rodent/rouge_util/new.rouge/nfasta/nr 2
FASTA searches a protein or DNA sequence data bank version 34.26.5 April 26, 2007
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
mKIAA0857, 1353 aa
vs /cdna4/rodent/rouge_util/new.rouge/nfasta/nr library
2727779818 residues in 7921681 sequences
statistics sampled from 60000 to 7894085 sequences
Expectation_n fit: rho(ln(x))= 7.0077+/-0.000213; mu= 7.7766+/- 0.012
mean_var=172.7691+/-32.884, 0's: 34 Z-trim: 113 B-trim: 348 in 1/65
Lambda= 0.097576
FASTA (3.5 Sept 2006) function [optimized, BL50 matrix (15:-5)] ktup: 2
join: 40, opt: 28, open/ext: -10/-2, width: 16
The best scores are: opt bits E(7921681)
gi|162318388|gb|AAI56560.1| RAB11 family interacti (1318) 8880 1263.5 0
gi|109473811|ref|XP_001073801.1| PREDICTED: simila (1317) 8050 1146.6 0
gi|73981000|ref|XP_540231.2| PREDICTED: similar to (1325) 4038 581.9 9.9e-163
gi|34222919|sp|Q8R361.2|RFIP5_MOUSE RecName: Full= ( 645) 3446 498.2 7.4e-138
gi|148666709|gb|EDK99125.1| RAB11 family interacti ( 623) 3291 476.4 2.7e-131
gi|119903259|ref|XP_616110.3| PREDICTED: similar t ( 653) 2940 427.0 2.1e-116
gi|109103540|ref|XP_001103469.1| PREDICTED: simila ( 966) 2911 423.1 4.6e-115
gi|34223002|sp|Q9BXF6.1|RFIP5_HUMAN RecName: Full= ( 653) 2900 421.3 1e-114
gi|62630155|gb|AAX88900.1| unknown [Homo sapiens] ( 522) 2880 418.4 6.2e-114
gi|194220613|ref|XP_001917193.1| PREDICTED: RAB11 ( 651) 2876 418.0 1.1e-113
gi|23271268|gb|AAH35013.1| RAB11 family interactin ( 652) 2874 417.7 1.3e-113
gi|52078345|gb|AAH51063.3| Rab11fip5 protein [Mus ( 523) 2618 381.5 7.8e-103
gi|149036565|gb|EDL91183.1| rCG56148 [Rattus norve ( 536) 2548 371.7 7.4e-100
gi|74203023|dbj|BAE26213.1| unnamed protein produc ( 518) 2480 362.1 5.5e-97
gi|6979206|gb|AAF34356.1|AF153085_1 phosphoprotein ( 549) 2273 333.0 3.4e-88
gi|119620155|gb|EAW99749.1| RAB11 family interacti ( 575) 2034 299.4 4.7e-78
gi|5912136|emb|CAB56002.1| hypothetical protein [H ( 253) 1375 206.2 2.3e-50
gi|117558545|gb|AAI27283.1| Rab11fip5 protein [Xen ( 607) 980 151.0 2.2e-33
gi|118090905|ref|XP_420890.2| PREDICTED: similar t ( 524) 888 138.0 1.6e-29
gi|47123092|gb|AAH70758.1| MGC83776 protein [Xenop ( 629) 883 137.4 3e-29
gi|20071446|gb|AAH26473.1| Rab11fip5 protein [Mus ( 243) 864 134.3 9.9e-29
gi|73979203|ref|XP_539967.2| PREDICTED: similar to (1273) 753 119.4 1.6e-23
gi|62822197|gb|AAY14746.1| unknown [Homo sapiens] ( 131) 719 113.6 9.1e-23
gi|33439255|gb|AAQ18786.1| Rab11-family interactin (1283) 698 111.7 3.3e-21
gi|67472130|sp|Q6WKZ4.2|RFIP1_HUMAN RecName: Full= (1283) 697 111.5 3.7e-21
gi|50659104|ref|NP_001002814.1| RAB11 family inter (1283) 696 111.4 4.1e-21
gi|109086159|ref|XP_001089664.1| PREDICTED: simila (1275) 690 110.5 7.3e-21
gi|20068811|gb|AAM09571.1|AF368294_1 Rab-coupling ( 649) 685 109.5 7.5e-21
gi|124249097|ref|NP_001074282.1| RAB11 family inte (1166) 687 110.1 9.2e-21
gi|119583753|gb|EAW63349.1| RAB11 family interacti ( 648) 670 107.4 3.2e-20
gi|78459239|gb|ABB43161.1| RAB11-family interactin ( 649) 670 107.4 3.2e-20
gi|50603589|gb|AAH77720.1| RAB11 family interactin ( 649) 669 107.3 3.6e-20
gi|194226439|ref|XP_001915472.1| PREDICTED: RAB11 ( 650) 656 105.4 1.3e-19
gi|73979205|ref|XP_857501.1| PREDICTED: similar to ( 649) 652 104.9 1.9e-19
gi|149541453|ref|XP_001519944.1| PREDICTED: simila (1348) 654 105.5 2.5e-19
gi|194679234|ref|XP_597040.3| PREDICTED: similar t ( 644) 647 104.2 3e-19
gi|74181553|dbj|BAE30042.1| unnamed protein produc ( 645) 642 103.5 4.9e-19
gi|116138490|gb|AAI25401.1| Rab11fip1 protein [Mus ( 645) 637 102.8 8e-19
gi|67472138|sp|Q9D620.1|RFIP1_MOUSE RecName: Full= ( 645) 637 102.8 8e-19
gi|97181130|sp|Q3B7T9.1|RFIP1_RAT RecName: Full=Ra ( 648) 613 99.4 8.4e-18
gi|189528321|ref|XP_699567.3| PREDICTED: similar t ( 503) 609 98.7 1e-17
gi|126304077|ref|XP_001381852.1| PREDICTED: simila (1290) 606 98.7 2.7e-17
gi|118101354|ref|XP_001233961.1| PREDICTED: hypoth ( 623) 597 97.1 3.9e-17
gi|63101551|gb|AAH94487.1| LOC432290 protein [Xeno ( 607) 587 95.7 1e-16
gi|47937658|gb|AAH72241.1| LOC432290 protein [Xeno ( 616) 587 95.7 1e-16
gi|134023869|gb|AAI35581.1| Rab11fip1 protein [Xen ( 601) 578 94.4 2.4e-16
gi|89273343|emb|CAJ81459.1| novel protein similar ( 996) 581 95.1 2.6e-16
gi|224080865|ref|XP_002194072.1| PREDICTED: simila ( 792) 529 87.7 3.5e-14
gi|148669882|gb|EDL01829.1| RAB11 family interacti ( 512) 509 84.6 1.8e-13
gi|223461132|gb|AAI39381.1| RAB11 family interacti ( 529) 509 84.7 1.9e-13
>>gi|162318388|gb|AAI56560.1| RAB11 family interacting p (1318 aa)
initn: 8880 init1: 8880 opt: 8880 Z-score: 6761.6 bits: 1263.5 E(): 0
Smith-Waterman score: 8880; 100.000% identity (100.000% similar) in 1318 aa overlap (36-1353:1-1318)
10 20 30 40 50 60
mKIAA0 AVGALQAARGSRLLTASRGCHVCHSVPGSAMALVRDPEPAAGSSRWLPTHVQVTVLRASG
::::::::::::::::::::::::::::::
gi|162 MALVRDPEPAAGSSRWLPTHVQVTVLRASG
10 20 30
70 80 90 100 110 120
mKIAA0 LRGKSSGAGSTSDAYTVIQVGREKYSTSVVEKTQGCPEWCEECSFELPPGALDGLLRAQE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
gi|162 LRGKSSGAGSTSDAYTVIQVGREKYSTSVVEKTQGCPEWCEECSFELPPGALDGLLRAQE
40 50 60 70 80 90
130 140 150 160 170 180
mKIAA0 ADAGPAPWASGPNAACELVLTTMHRSLIGVDKFLGRATVALDEVFRAGRAQHTQWYRLHS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
gi|162 ADAGPAPWASGPNAACELVLTTMHRSLIGVDKFLGRATVALDEVFRAGRAQHTQWYRLHS
100 110 120 130 140 150
190 200 210 220 230 240
mKIAA0 KPGKKEKERGEIQVTIQFTRNNLSASMFDLSMKDKPRSPFSKLKDRVKGKKKYDLESASA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
gi|162 KPGKKEKERGEIQVTIQFTRNNLSASMFDLSMKDKPRSPFSKLKDRVKGKKKYDLESASA
160 170 180 190 200 210
250 260 270 280 290 300
mKIAA0 ILPSSALEDPELGSLGKMGKAKGFFLRNKLRKSSLTQSNTSLGSDSTLSSTSGSLVYQGP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
gi|162 ILPSSALEDPELGSLGKMGKAKGFFLRNKLRKSSLTQSNTSLGSDSTLSSTSGSLVYQGP
220 230 240 250 260 270
310 320 330 340 350 360
mKIAA0 GAELLTRSPSHSSWLSTEGGRDSIQSPKLLTHKRTYSDEASQLRAAPPRALLELQGHLDG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
gi|162 GAELLTRSPSHSSWLSTEGGRDSIQSPKLLTHKRTYSDEASQLRAAPPRALLELQGHLDG
280 290 300 310 320 330
370 380 390 400 410 420
mKIAA0 ASRSSLCVNGSHVYNEEPQPPLRHRSSISGPFPPSSSLHSVPPRSSEEGSRSSDDSWGRG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
gi|162 ASRSSLCVNGSHVYNEEPQPPLRHRSSISGPFPPSSSLHSVPPRSSEEGSRSSDDSWGRG
340 350 360 370 380 390
430 440 450 460 470 480
mKIAA0 SHGTSSSEAVPGQEELSKQAKGASCSGEEEGARLPEGKPVQVATPMVASSEAVAAEKDRK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
gi|162 SHGTSSSEAVPGQEELSKQAKGASCSGEEEGARLPEGKPVQVATPMVASSEAVAAEKDRK
400 410 420 430 440 450
490 500 510 520 530 540
mKIAA0 PRMGLFHHHHHQGLSRSEQGRRGSVGEKGSPSLGASPHHSSTGEEKAKSSWFGLRESKEP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
gi|162 PRMGLFHHHHHQGLSRSEQGRRGSVGEKGSPSLGASPHHSSTGEEKAKSSWFGLRESKEP
460 470 480 490 500 510
550 560 570 580 590 600
mKIAA0 TQKPSLDVSPQVESDPAAPHPCSPQALAPPPAPAAAPMLSTNLFAVTSPAAATAAAATIV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
gi|162 TQKPSLDVSPQVESDPAAPHPCSPQALAPPPAPAAAPMLSTNLFAVTSPAAATAAAATIV
520 530 540 550 560 570
610 620 630 640 650 660
mKIAA0 LEATPSGFLGVTNPFLNSLQSNPFFEDLKADIALNSPSPAPSLPSASRASLAPLASPGKA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
gi|162 LEATPSGFLGVTNPFLNSLQSNPFFEDLKADIALNSPSPAPSLPSASRASLAPLASPGKA
580 590 600 610 620 630
670 680 690 700 710 720
mKIAA0 LPEWDDTFNIFAAGRLQQEAGSGILAPAGMGLEEDGLQDPGPRTMAVKATEPQGEPGRGR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
gi|162 LPEWDDTFNIFAAGRLQQEAGSGILAPAGMGLEEDGLQDPGPRTMAVKATEPQGEPGRGR
640 650 660 670 680 690
730 740 750 760 770 780
mKIAA0 RGSNIWLEPKVSVDSELDQPSTSMSDPGPFGSSGSGPSSRASQLHLQASASTPDRELPAS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
gi|162 RGSNIWLEPKVSVDSELDQPSTSMSDPGPFGSSGSGPSSRASQLHLQASASTPDRELPAS
700 710 720 730 740 750
790 800 810 820 830 840
mKIAA0 EGGAGQSPADSGASLFSSPEVLSVWERFPGSDDTPGGRDEEAPQDGSQLFQELNTVEDSW
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
gi|162 EGGAGQSPADSGASLFSSPEVLSVWERFPGSDDTPGGRDEEAPQDGSQLFQELNTVEDSW
760 770 780 790 800 810
850 860 870 880 890 900
mKIAA0 PWDVITISPTAEVASPVMKGESDGVLSSQVQPESPDTVPPMGSEGLPALLEPEPEQGLDE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
gi|162 PWDVITISPTAEVASPVMKGESDGVLSSQVQPESPDTVPPMGSEGLPALLEPEPEQGLDE
820 830 840 850 860 870
910 920 930 940 950 960
mKIAA0 GPWLGPPPPKPPRLFTPTNSQVEEEDKEEEENATGRQSSRGPGVEKDSTPRALAIGPQES
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
gi|162 GPWLGPPPPKPPRLFTPTNSQVEEEDKEEEENATGRQSSRGPGVEKDSTPRALAIGPQES
880 890 900 910 920 930
970 980 990 1000 1010 1020
mKIAA0 KEEWVNPELEKLHRLPSGTLIGKPELEDPVGETSSPVFGDCPPRPTSCPEGPVPRPHNSI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
gi|162 KEEWVNPELEKLHRLPSGTLIGKPELEDPVGETSSPVFGDCPPRPTSCPEGPVPRPHNSI
940 950 960 970 980 990
1030 1040 1050 1060 1070 1080
mKIAA0 SSTLLSQKVLGTSETEEGFETKSQELAKEGFGPLSVPSQQSSMRAKEEEEGEEEEEEGEE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
gi|162 SSTLLSQKVLGTSETEEGFETKSQELAKEGFGPLSVPSQQSSMRAKEEEEGEEEEEEGEE
1000 1010 1020 1030 1040 1050
1090 1100 1110 1120 1130 1140
mKIAA0 EEALETSNSFLCQESQDPPSFPSISPPGSRGSSIHSGPEELPTPPEPAFPPPPLPPWASH
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
gi|162 EEALETSNSFLCQESQDPPSFPSISPPGSRGSSIHSGPEELPTPPEPAFPPPPLPPWASH
1060 1070 1080 1090 1100 1110
1150 1160 1170 1180 1190 1200
mKIAA0 RHGVPGPPCPPLPIAWPLTSSSSPPEESASPLGPPELSPTGGSPTSYGEDHAAATPASPL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
gi|162 RHGVPGPPCPPLPIAWPLTSSSSPPEESASPLGPPELSPTGGSPTSYGEDHAAATPASPL
1120 1130 1140 1150 1160 1170
1210 1220 1230 1240 1250 1260
mKIAA0 VLLPLETRPAEEPQPSGSPHPVKPLTAAPVEASPDRKQPRTSLSTALSSGLERLKTVTSG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
gi|162 VLLPLETRPAEEPQPSGSPHPVKPLTAAPVEASPDRKQPRTSLSTALSSGLERLKTVTSG
1180 1190 1200 1210 1220 1230
1270 1280 1290 1300 1310 1320
mKIAA0 GIQSVLPASQLGSSVDTKRPKDSAVLDQSAKYYHLTHDELIGLLLQRERELSQRDEHVQE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
gi|162 GIQSVLPASQLGSSVDTKRPKDSAVLDQSAKYYHLTHDELIGLLLQRERELSQRDEHVQE
1240 1250 1260 1270 1280 1290
1330 1340 1350
mKIAA0 LESYIDRLLVRIMETSPTLLQISPGPPK
::::::::::::::::::::::::::::
gi|162 LESYIDRLLVRIMETSPTLLQISPGPPK
1300 1310
>>gi|109473811|ref|XP_001073801.1| PREDICTED: similar to (1317 aa)
initn: 5501 init1: 2388 opt: 8050 Z-score: 6130.2 bits: 1146.6 E(): 0
Smith-Waterman score: 8050; 92.000% identity (95.472% similar) in 1325 aa overlap (36-1353:1-1317)
10 20 30 40 50 60
mKIAA0 AVGALQAARGSRLLTASRGCHVCHSVPGSAMALVRDPEPAAGSSRWLPTHVQVTVLRASG
:::::: :::::::::::::::::::::::
gi|109 MALVRDDEPAAGSSRWLPTHVQVTVLRASG
10 20 30
70 80 90 100 110 120
mKIAA0 LRGKSSGAGSTSDAYTVIQVGREKYSTSVVEKTQGCPEWCEECSFELPPGALDGLLRAQE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
gi|109 LRGKSSGAGSTSDAYTVIQVGREKYSTSVVEKTQGCPEWCEECSFELPPGALDGLLRAQE
40 50 60 70 80 90
130 140 150 160 170 180
mKIAA0 ADAGPAPWASGPNAACELVLTTMHRSLIGVDKFLGRATVALDEVFRAGRAQHTQWYRLHS
.:::::::::::::::::::::::::::::::::::::::::::::::::::::::.:::
gi|109 TDAGPAPWASGPNAACELVLTTMHRSLIGVDKFLGRATVALDEVFRAGRAQHTQWYKLHS
100 110 120 130 140 150
190 200 210 220 230 240
mKIAA0 KPGKKEKERGEIQVTIQFTRNNLSASMFDLSMKDKPRSPFSKLKDRVKGKKKYDLESASA
:::::::::::::::::::::::::::::::::::::::::::::.::::::::::::::
gi|109 KPGKKEKERGEIQVTIQFTRNNLSASMFDLSMKDKPRSPFSKLKDKVKGKKKYDLESASA
160 170 180 190 200 210
250 260 270 280 290 300
mKIAA0 ILPSSALEDPELGSLGKMGKAKGFFLRNKLRKSSLTQSNTSLGSDSTLSSTSGSLVYQGP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
gi|109 ILPSSALEDPELGSLGKMGKAKGFFLRNKLRKSSLTQSNTSLGSDSTLSSTSGSLVYQGP
220 230 240 250 260 270
310 320 330 340 350 360
mKIAA0 GAELLTRSPSHSSWLSTEGGRDSIQSPKLLTHKRTYSDEASQLRAAPPRALLELQGHLDG
:::::::::::::::.::.:::::::::::::::::::::::::::::::::::::::::
gi|109 GAELLTRSPSHSSWLATEAGRDSIQSPKLLTHKRTYSDEASQLRAAPPRALLELQGHLDG
280 290 300 310 320 330
370 380 390 400 410 420
mKIAA0 ASRSSLCVNGSHVYNEEPQPPLRHRSSISGPFPPSSSLHSVPPRSSEEGSRSSDDSWGRG
::::::::::::::::::::::::::::::::: ::::::::::::::::::::::: ::
gi|109 ASRSSLCVNGSHVYNEEPQPPLRHRSSISGPFP-SSSLHSVPPRSSEEGSRSSDDSWVRG
340 350 360 370 380
430 440 450 460 470 480
mKIAA0 SHGTSSSEAVPGQEELSKQAK----GASCSGEEEGARLPEGKPVQVATPMVASSEAVAAE
:::::: ::::::::::::.: :::::.::::.: ::::::::::::::::::.:::
gi|109 SHGTSSLEAVPGQEELSKQTKVLAPGASCSAEEEGTRPPEGKPVQVATPMVASSEAIAAE
390 400 410 420 430 440
490 500 510 520 530 540
mKIAA0 KDRKPRMGLFHHHHHQGLSRSEQGRRGSVGEKGSPSLGASPHHSSTGEEKAKSSWFGLRE
:.::::::::::::::::::.: :::::::::::::::::::::::::::::::::::::
gi|109 KERKPRMGLFHHHHHQGLSRNEVGRRGSVGEKGSPSLGASPHHSSTGEEKAKSSWFGLRE
450 460 470 480 490 500
550 560 570 580 590
mKIAA0 SKEPTQKPSLDVSPQVESDPAAPHPCSPQALAPPPAPAAAPMLSTNLFAVTSPAAATA--
:::::::::::::::::::::::::: ::::.:::::::::::::::::..:::.:::
gi|109 SKEPTQKPSLDVSPQVESDPAAPHPCFPQALVPPPAPAAAPMLSTNLFAAASPATATATA
510 520 530 540 550 560
600 610 620 630 640 650
mKIAA0 AAATIVLEATPSGFLGVTNPFLNSLQSNPFFEDLKADIALNSPSPAPSLPSASRASLAPL
:::.::::::::::::::::::.:::::::::::::::::::::::::::::::::::::
gi|109 AAANIVLEATPSGFLGVTNPFLTSLQSNPFFEDLKADIALNSPSPAPSLPSASRASLAPL
570 580 590 600 610 620
660 670 680 690 700 710
mKIAA0 ASPGKALPEWDDTFNIFAAGRLQQEAGSGILAPAGMGLEEDGLQDPGPRTMAVKATEPQG
::::::::::::.::::::::::.::::::::::::::::::::::::::.:::::::::
gi|109 ASPGKALPEWDDNFNIFAAGRLQSEAGSGILAPAGMGLEEDGLQDPGPRTLAVKATEPQG
630 640 650 660 670 680
720 730 740 750 760 770
mKIAA0 EPGRGRRGSNIWLEPKVSVDSELDQPSTSMSDPGPFGSSGSGPSSRASQLHLQASASTPD
::: :: ::. :::::. ::: :::::::::::::.::::.::::::.::::::::::::
gi|109 EPGGGRGGSSTWLEPKAPVDSVLDQPSTSMSDPGPLGSSGTGPSSRAAQLHLQASASTPD
690 700 710 720 730 740
780 790 800 810 820 830
mKIAA0 RELPASEGGAGQSPADSGASLFSSPEVLSVWERFPGSDDTPGGRDEEAPQDGSQLFQELN
::::::::::::::::::::::::::::::::::::::::::: .::: :::::::::::
gi|109 RELPASEGGAGQSPADSGASLFSSPEVLSVWERFPGSDDTPGGLEEEAAQDGSQLFQELN
750 760 770 780 790 800
840 850 860 870 880 890
mKIAA0 TVEDSWPWDVITISPTAEVASPVMKGESDGVLSSQVQPESPDTVPPMGSEGLPAL-LEPE
::::::::::::::::::.::::::::: :::::::::: :::::::::::::.: ::::
gi|109 TVEDSWPWDVITISPTAEAASPVMKGESKGVLSSQVQPEYPDTVPPMGSEGLPSLQLEPE
810 820 830 840 850 860
900 910 920 930 940 950
mKIAA0 PEQGLDEGPWLGPPPPKPPRLFTPTNSQVEEEDKEEEENATGRQSSRGPGVEKDSTPRAL
::::::::::::::::::::::::::::::: :::::::::: :::::::: :::: ::
gi|109 PEQGLDEGPWLGPPPPKPPRLFTPTNSQVEE-DKEEEENATGGPSSRGPGVE-DSTPSAL
870 880 890 900 910 920
960 970 980 990 1000 1010
mKIAA0 AIGPQESKEEWVNPELEKLHRLPSGTLIGKPELEDPVGETSSPVFGDCPPRPTSCPEGPV
.::: ::::: :: :::.:::::::::::.::::: ::::::: :: ::::::::::.
gi|109 VIGPPESKEEGVNSELEELHRLPSGTLIGEPELEDVVGETSSPGSRDCLPRPTSCPEGPI
930 940 950 960 970 980
1020 1030 1040 1050 1060 1070
mKIAA0 PRPHNSISSTLLSQKVLGTSETEEGFETKSQELAKEGFGPLSVPSQQSSMRAKEEEEGEE
:: ::: :::::::: :::::.:.:::.:::::::::: :::::::... .:.:: ::
gi|109 PRSHNSASSTLLSQKDWGTSETDESFETQSQELAKEGFGALSVPSQQADLWVKKEE--EE
990 1000 1010 1020 1030 1040
1080 1090 1100 1110 1120 1130
mKIAA0 EEEEGEEEEALETSNSFLCQESQDPPSFPSISPPGSRGSSIHSGPEELPTPPEPAFPPPP
::.:.:::: :.:: : ::::::: :.:: ::::::::: :::::::::::::::::::
gi|109 EEKEAEEEEEEEASNPFSCQESQDPLSLPSTSPPGSRGSSTHSGPEELPTPPEPAFPPPP
1050 1060 1070 1080 1090 1100
1140 1150 1160 1170 1180 1190
mKIAA0 LPPWASHRHGVPGPPCPPLPIAWPLTSSSSPPEESASPLGPPELSPTGGSPTSYGEDHAA
:::::::::::::::::::::::::::::: ::::: :: :::::::::: :::::::
gi|109 LPPWASHRHGVPGPPCPPLPIAWPLTSSSSLPEESACPL---ELSPTGGSPTPYGEDHAA
1110 1120 1130 1140 1150 1160
1200 1210 1220 1230 1240 1250
mKIAA0 ATPASPLVLLPLETRPAEEPQPSGSPHPVKPLTAAPVEASPDRKQPRTSLSTALSSGLER
::::::::::::::::::.:::::::::::::::::::::::::: ::::::::::::::
gi|109 ATPASPLVLLPLETRPAEDPQPSGSPHPVKPLTAAPVEASPDRKQSRTSLSTALSSGLER
1170 1180 1190 1200 1210 1220
1260 1270 1280 1290 1300 1310
mKIAA0 LKTVTSGGIQSVLPASQLGSSVDTKRPKDSAVLDQSAKYYHLTHDELIGLLLQRERELSQ
::::::::::::::::::::.::::: :::::::::::::::::::::::::::::::::
gi|109 LKTVTSGGIQSVLPASQLGSTVDTKRLKDSAVLDQSAKYYHLTHDELIGLLLQRERELSQ
1230 1240 1250 1260 1270 1280
1320 1330 1340 1350
mKIAA0 RDEHVQELESYIDRLLVRIMETSPTLLQISPGPPK
::::::::::::::::::::::::::::::::: :
gi|109 RDEHVQELESYIDRLLVRIMETSPTLLQISPGPSK
1290 1300 1310
>>gi|73981000|ref|XP_540231.2| PREDICTED: similar to RAB (1325 aa)
initn: 4318 init1: 2409 opt: 4038 Z-score: 3077.8 bits: 581.9 E(): 9.9e-163
Smith-Waterman score: 6140; 72.727% identity (83.149% similar) in 1353 aa overlap (36-1353:1-1325)
10 20 30 40 50 60
mKIAA0 AVGALQAARGSRLLTASRGCHVCHSVPGSAMALVRDPEPAAGSSRWLPTHVQVTVLRASG
::::: ::: : ::::::::::::::: :
gi|739 MALVRGAEPAPGPSRWLPTHVQVTVLRARG
10 20 30
70 80 90 100 110 120
mKIAA0 LRGKSSGAGSTSDAYTVIQVGREKYSTSVVEKTQGCPEWCEECSFELPPGALDGLLRAQE
::::::::::::::::::::::::::::::::: ::::: ::::::::::::::::::::
gi|739 LRGKSSGAGSTSDAYTVIQVGREKYSTSVVEKTPGCPEWREECSFELPPGALDGLLRAQE
40 50 60 70 80 90
130 140 150 160 170 180
mKIAA0 ADAGPAPWASGPNAACELVLTTMHRSLIGVDKFLGRATVALDEVFRAGRAQHTQWYRLHS
:::: ::::.: ::::::::::::::::::::::.::::::::: ::::::::::.:::
gi|739 ADAGSAPWAAGSAAACELVLTTMHRSLIGVDKFLGQATVALDEVFGAGRAQHTQWYKLHS
100 110 120 130 140 150
190 200 210 220 230 240
mKIAA0 KPGKKEKERGEIQVTIQFTRNNLSASMFDLSMKDKPRSPFSKLKDRVKGKKKYDLESASA
: ::::::::::::::::::::::::::::::::::::::::.::..:::::.:::::::
gi|739 KAGKKEKERGEIQVTIQFTRNNLSASMFDLSMKDKPRSPFSKIKDKMKGKKKFDLESASA
160 170 180 190 200 210
250 260 270 280 290 300
mKIAA0 ILPSSALEDPELGSLGKMGKAKGFFLRNKLRKSSLTQSNTSLGSDSTLSSTSGSLVYQGP
::::::::::::::::::::::::::::::::::::::::::::::::::.::::.::::
gi|739 ILPSSALEDPELGSLGKMGKAKGFFLRNKLRKSSLTQSNTSLGSDSTLSSASGSLAYQGP
220 230 240 250 260 270
310 320 330 340 350 360
mKIAA0 GAELLTRSPSHSSWLSTEGGRDSIQSPKLLTHKRTYSDEASQLRAAPPRALLELQGHLDG
:.::::.:::.:::::::::::: ::::::::::::::::::.:.::::.::.::::::.
gi|739 GTELLTHSPSRSSWLSTEGGRDSTQSPKLLTHKRTYSDEASQMRVAPPRSLLDLQGHLDA
280 290 300 310 320 330
370 380 390 400 410 420
mKIAA0 ASRSSLCVNGSHVYNEEPQPPLRHRSSISGPFPPSSSLHSVPPRSSEEGSRSSDDSWGRG
::::::::::::.:::::: ::::::::::::::::::::: : .::::: .::: :::
gi|739 ASRSSLCVNGSHIYNEEPQAPLRHRSSISGPFPPSSSLHSVSFRPAEEGSRPTDDSGGRG
340 350 360 370 380 390
430 440 450 460 470 480
mKIAA0 SHGTSSSEAVPGQEELSKQAK----GASCSGEEEGARLPEGKPVQVATPMVASSEAVAAE
:..::::: .:::::::.::: :.: ::::::::::::::::::::.:::::.:: .
gi|739 SRSTSSSEMLPGQEELSSQAKVLATGTSRSGEEEGARLPEGKPVQVATPLVASSESVAEK
400 410 420 430 440 450
490 500 510 520 530
mKIAA0 K-----DRKPRMGLFHHHHHQGLSRSEQGRRGSVGEKGSPSLGASPHHSSTGEEKAKSSW
. .:::::::::::: ::::::: :::::.::::.:. :::::::: :::::::::
gi|739 EGARKEERKPRMGLFHHHH-QGLSRSELGRRGSLGEKGGPTQGASPHHSSGGEEKAKSSW
460 470 480 490 500
540 550 560 570 580 590
mKIAA0 FGLRESKEPTQKPSLDVSPQVESDPAA-PH--PCSPQA-LAPPPAPAAAPMLSTNLFAVT
:::::.:::::::::::::::: :::: :: :::: : . : :::.:::::::::::..
gi|739 FGLREAKEPTQKPSLDVSPQVEPDPAALPHHLPCSPCAPVLPTPAPTAAPMLSTNLFAAA
510 520 530 540 550 560
600 610 620 630 640 650
mKIAA0 SPAAATAAAATIVL-EATPSGFLGVTNPFLNSLQSNPFFEDLKADIALNSPSPAPSLPSA
::::::::::. . :::::::::.:::::.:.:::::::.: :::::::::::::::::
gi|739 SPAAATAAAASAAAPEATPSGFLGLTNPFLTSMQSNPFFEELLADIALNSPSPAPSLPSA
570 580 590 600 610 620
660 670 680 690 700 710
mKIAA0 SRASLAPLASPGKALPEWDDTFNIFAAGRLQQEAGSGILAPAG-MGLEEDGLQDPGPRTM
:::: .:::::::: :::.::::.:::.::. :: : :::::: .::: :::. : .:
gi|739 SRASPTPLASPGKAPPEWEDTFNVFAASRLRPEARSKILAPAGGVGLEVTGLQEQGRGVM
630 640 650 660 670 680
720 730 740 750 760
mKIAA0 AVKATEPQGEPGRGRRG-SNIWLEPKVSVDSELDQPSTSMSDPGPFGSSGSGPSSRASQL
.:::.::.:.:: : :: :.. :::.. .: ::. :.:..::::.:: : : ..:
gi|739 TVKASEPRGDPGGGGRGGSSVRLEPRMPLDLGLDRQSSSVADPGPLGSVGPILPSTSAQQ
690 700 710 720 730 740
770 780 790 800 810 820
mKIAA0 HLQASASTPDRELPASEGGAGQSPADSGASLFSSPEVLSVWERFPGSDDTPGGRDEEAPQ
::.:: : ::: :: : ::::::::..::::::::.:::::.::.:::: :. ::: :
gi|739 HLRASDSEADREPPAPGGEAGQSPADSATSLFSSPEVISVWERLPGTDDTPEGQ-EEASQ
750 760 770 780 790 800
830 840 850 860 870 880
mKIAA0 DGSQLFQELNTVEDSWPWDVITISPTAEVASPVMKGESDGVLSSQVQPESPDTVPPMGSE
.::..:::::::::::::.::::.::..: :..:::: . :.:::::. : : :::
gi|739 GEGQLLHELNTVEDSWPWDVVTISPAAEMSSLVLRGESDELPPPQMQPESPEPVSPRGSE
810 820 830 840 850 860
890 900 910 920 930
mKIAA0 GLPAL-LEPEPEQGL------------DEGPWLGPPPPKPPRLFTPTNSQVEEEDKEEEE
: : : :::::: : :.:: . :::::::::::..:: .:::.
gi|739 GPPPLKLEPEPEPELEPEAKSKPEQVSDRGPQPSRPPPKPPRLFTPSDSQEKEEDEAAAV
870 880 890 900 910 920
940 950 960 970 980 990
mKIAA0 -NATGRQSSRGP--GVEKDSTPRALAIGPQESKEEWVNPELEKLHRLPSGTLIGKPELED
:.: ::: : : :. : .:. ::::..:: .: :. ::::.: : :::
gi|739 VAAAGGLRSRGAETGGE-DDLPSTLVAGPQEAEEEGETPGSES-DSHSSGTLLGGPGLED
930 940 950 960 970 980
1000 1010 1020 1030 1040 1050
mKIAA0 PVGETSSPVFGDCPPRPTSCPEGPVPRPHNSISSTLLSQKVLGT---SETEEGFETKSQE
: : :: : ::.:::::.::: : . ::.. :. .:. :: .:. :
gi|739 VVEGISPPVSGPSLSLPTGCPEGPTPRPSYSKLLAPQSQQIWGAPEKGESPEGPDTQIQG
990 1000 1010 1020 1030 1040
1060 1070 1080 1090 1100 1110
mKIAA0 LAKEGFGPLSVPSQQSSMRAKEEEEGEEEEEEGEEEEALETSNSFLCQESQDPPSFPSIS
. ::. : ::.... .. ::.:: : :: :.::::::.: :
gi|739 PVGEGLESLPGSSQHTGLCTS-------------EEDAL---NPFLSQRSQDPPSLPFTS
1050 1060 1070 1080 1090
1120 1130 1140 1150 1160 1170
mKIAA0 PPGSRGSSIHSGPEELPTPPEPAFPPPPLPPWASHRHGVPGPPCPPLPIAWPLTSSSSPP
::::: ::: ::::::::::::::::::::::::: :: :.::: ::: : :::::: :
gi|739 PPGSRDSSIVSGPEELPTPPEPAFPPPPLPPWASHCHGGPSPPCSPLPGARPLTSSS--P
1100 1110 1120 1130 1140
1180 1190 1200 1210 1220 1230
mKIAA0 EESASPLGPPELSPTGGSPTSYGEDHAAATPASPLVLLPLETRPAEEPQPSGSPHPVKPL
:: : :: ::::. ::::::. ::::::::::::: ::::: :.::::::::
gi|739 T-----LGEPASSP-GGSPAPLGEDHAATIPASPLVLLPLETRLAEEPQSSASPHPVKPL
1150 1160 1170 1180 1190 1200
1240 1250 1260 1270 1280 1290
mKIAA0 TAAPVEASPDRKQPRTSLSTALSSGLERLKTVTSGGIQSVLPASQLGSSVDTKRPKDSAV
.:: .:.:::.:: :.:::::::::::.:::::::..: : :: ..:..::::: :::.:
gi|739 SAASLEGSPDKKQSRSSLSTALSSGLEKLKTVTSGSVQPVAPAPHVGQTVDTKRLKDSGV
1210 1220 1230 1240 1250 1260
1300 1310 1320 1330 1340 1350
mKIAA0 LDQSAKYYHLTHDELIGLLLQRERELSQRDEHVQELESYIDRLLVRIMETSPTLLQISPG
::::::::::::::::.:::::::::::::::::::::::::::::::::::::::: :
gi|739 LDQSAKYYHLTHDELISLLLQRERELSQRDEHVQELESYIDRLLVRIMETSPTLLQIPPD
1270 1280 1290 1300 1310 1320
mKIAA0 PPK
:::
gi|739 PPK
>>gi|34222919|sp|Q8R361.2|RFIP5_MOUSE RecName: Full=Rab1 (645 aa)
initn: 3492 init1: 3428 opt: 3446 Z-score: 2631.3 bits: 498.2 E(): 7.4e-138
Smith-Waterman score: 3446; 92.042% identity (94.637% similar) in 578 aa overlap (36-612:1-569)
10 20 30 40 50 60
mKIAA0 AVGALQAARGSRLLTASRGCHVCHSVPGSAMALVRDPEPAAGSSRWLPTHVQVTVLRASG
::::::::::::::::::::::::::::::
gi|342 MALVRDPEPAAGSSRWLPTHVQVTVLRASG
10 20 30
70 80 90 100 110 120
mKIAA0 LRGKSSGAGSTSDAYTVIQVGREKYSTSVVEKTQGCPEWCEECSFELPPGALDGLLRAQE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
gi|342 LRGKSSGAGSTSDAYTVIQVGREKYSTSVVEKTQGCPEWCEECSFELPPGALDGLLRAQE
40 50 60 70 80 90
130 140 150 160 170 180
mKIAA0 ADAGPAPWASGPNAACELVLTTMHRSLIGVDKFLGRATVALDEVFRAGRAQHTQWYRLHS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
gi|342 ADAGPAPWASGPNAACELVLTTMHRSLIGVDKFLGRATVALDEVFRAGRAQHTQWYRLHS
100 110 120 130 140 150
190 200 210 220 230 240
mKIAA0 KPGKKEKERGEIQVTIQFTRNNLSASMFDLSMKDKPRSPFSKLKDRVKGKKKYDLESASA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
gi|342 KPGKKEKERGEIQVTIQFTRNNLSASMFDLSMKDKPRSPFSKLKDRVKGKKKYDLESASA
160 170 180 190 200 210
250 260 270 280 290 300
mKIAA0 ILPSSALEDPELGSLGKMGKAKGFFLRNKLRKSSLTQSNTSLGSDSTLSSTSGSLVYQGP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
gi|342 ILPSSALEDPELGSLGKMGKAKGFFLRNKLRKSSLTQSNTSLGSDSTLSSTSGSLVYQGP
220 230 240 250 260 270
310 320 330 340 350 360
mKIAA0 GAELLTRSPSHSSWLSTEGGRDSIQSPKLLTHKRTYSDEASQLRAAPPRALLELQGHLDG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
gi|342 GAELLTRSPSHSSWLSTEGGRDSIQSPKLLTHKRTYSDEASQLRAAPPRALLELQGHLDG
280 290 300 310 320 330
370 380 390 400 410 420
mKIAA0 ASRSSLCVNGSHVYNEEPQPPLRHRSSISGPFPPSSSLHSVPPRSSEEGSRSSDDSWGRG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
gi|342 ASRSSLCVNGSHVYNEEPQPPLRHRSSISGPFPPSSSLHSVPPRSSEEGSRSSDDSWGRG
340 350 360 370 380 390
430 440 450 460 470 480
mKIAA0 SHGTSSSEAVPGQEELSKQAKGASCSGEEEGARLPEGKPVQVATPMVASSEAVAAEKDRK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
gi|342 SHGTSSSEAVPGQEELSKQAKGASCSGEEEGARLPEGKPVQVATPMVASSEAVAAEKDRK
400 410 420 430 440 450
490 500 510 520 530 540
mKIAA0 PRMGLFHHHHHQGLSRSEQGRRGSVGEKGSPSLGASPHHSSTGEEKAKSSWFGLRESKEP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
gi|342 PRMGLFHHHHHQGLSRSEQGRRGSVGEKGSPSLGASPHHSSTGEEKAKSSWFGLRESKEP
460 470 480 490 500 510
550 560 570 580 590 600
mKIAA0 TQKPSLDVSPQ-VESDPAAPHPCSPQALAPPPAPAAAPMLSTNLFAVTSPAAATAAAATI
::::: :. :. ::: ::. : . ..: ::..: . . .:...
gi|342 TQKPS----PHPVKPLTAAPVEASPDRKQPRTSLSTA--LSSGLERLKT---VTSGGIQS
520 530 540 550 560
610 620 630 640 650 660
mKIAA0 VLEATPSGFLGVTNPFLNSLQSNPFFEDLKADIALNSPSPAPSLPSASRASLAPLASPGK
:: :. :
gi|342 VLPASQLGSSVDTKRPKDSAVLDQSAKYYHLTHDELIGLLLQRERELSQRDEHVQELESY
570 580 590 600 610 620
>>gi|148666709|gb|EDK99125.1| RAB11 family interacting p (623 aa)
initn: 3337 init1: 3273 opt: 3291 Z-score: 2513.6 bits: 476.4 E(): 2.7e-131
Smith-Waterman score: 3291; 91.727% identity (94.424% similar) in 556 aa overlap (58-612:1-547)
30 40 50 60 70 80
mKIAA0 CHSVPGSAMALVRDPEPAAGSSRWLPTHVQVTVLRASGLRGKSSGAGSTSDAYTVIQVGR
::::::::::::::::::::::::::::::
gi|148 VTVLRASGLRGKSSGAGSTSDAYTVIQVGR
10 20 30
90 100 110 120 130 140
mKIAA0 EKYSTSVVEKTQGCPEWCEECSFELPPGALDGLLRAQEADAGPAPWASGPNAACELVLTT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
gi|148 EKYSTSVVEKTQGCPEWCEECSFELPPGALDGLLRAQEADAGPAPWASGPNAACELVLTT
40 50 60 70 80 90
150 160 170 180 190 200
mKIAA0 MHRSLIGVDKFLGRATVALDEVFRAGRAQHTQWYRLHSKPGKKEKERGEIQVTIQFTRNN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
gi|148 MHRSLIGVDKFLGRATVALDEVFRAGRAQHTQWYRLHSKPGKKEKERGEIQVTIQFTRNN
100 110 120 130 140 150
210 220 230 240 250 260
mKIAA0 LSASMFDLSMKDKPRSPFSKLKDRVKGKKKYDLESASAILPSSALEDPELGSLGKMGKAK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
gi|148 LSASMFDLSMKDKPRSPFSKLKDRVKGKKKYDLESASAILPSSALEDPELGSLGKMGKAK
160 170 180 190 200 210
270 280 290 300 310 320
mKIAA0 GFFLRNKLRKSSLTQSNTSLGSDSTLSSTSGSLVYQGPGAELLTRSPSHSSWLSTEGGRD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
gi|148 GFFLRNKLRKSSLTQSNTSLGSDSTLSSTSGSLVYQGPGAELLTRSPSHSSWLSTEGGRD
220 230 240 250 260 270
330 340 350 360 370 380
mKIAA0 SIQSPKLLTHKRTYSDEASQLRAAPPRALLELQGHLDGASRSSLCVNGSHVYNEEPQPPL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
gi|148 SIQSPKLLTHKRTYSDEASQLRAAPPRALLELQGHLDGASRSSLCVNGSHVYNEEPQPPL
280 290 300 310 320 330
390 400 410 420 430 440
mKIAA0 RHRSSISGPFPPSSSLHSVPPRSSEEGSRSSDDSWGRGSHGTSSSEAVPGQEELSKQAKG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
gi|148 RHRSSISGPFPPSSSLHSVPPRSSEEGSRSSDDSWGRGSHGTSSSEAVPGQEELSKQAKG
340 350 360 370 380 390
450 460 470 480 490 500
mKIAA0 ASCSGEEEGARLPEGKPVQVATPMVASSEAVAAEKDRKPRMGLFHHHHHQGLSRSEQGRR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
gi|148 ASCSGEEEGARLPEGKPVQVATPMVASSEAVAAEKDRKPRMGLFHHHHHQGLSRSEQGRR
400 410 420 430 440 450
510 520 530 540 550 560
mKIAA0 GSVGEKGSPSLGASPHHSSTGEEKAKSSWFGLRESKEPTQKPSLDVSPQ-VESDPAAPHP
::::::::::::::::::::::::::::::::::::::::::: :. :. :::
gi|148 GSVGEKGSPSLGASPHHSSTGEEKAKSSWFGLRESKEPTQKPS----PHPVKPLTAAPVE
460 470 480 490 500
570 580 590 600 610 620
mKIAA0 CSPQALAPPPAPAAAPMLSTNLFAVTSPAAATAAAATIVLEATPSGFLGVTNPFLNSLQS
::. : . ..: ::..: . . .:... :: :. :
gi|148 ASPDRKQPRTSLSTA--LSSGLERLKT---VTSGGIQSVLPASQLGSSVDTKRPKDSAVL
510 520 530 540 550 560
630 640 650 660 670 680
mKIAA0 NPFFEDLKADIALNSPSPAPSLPSASRASLAPLASPGKALPEWDDTFNIFAAGRLQQEAG
gi|148 DQSAKYYHLTHDELIGLLLQRERELSQRDEHVQELESYIDRLLVRIMETSPTLLQISPGP
570 580 590 600 610 620
>>gi|119903259|ref|XP_616110.3| PREDICTED: similar to RA (653 aa)
initn: 3257 init1: 2421 opt: 2940 Z-score: 2246.3 bits: 427.0 E(): 2.1e-116
Smith-Waterman score: 2984; 82.332% identity (88.693% similar) in 566 aa overlap (36-588:1-552)
10 20 30 40 50 60
mKIAA0 AVGALQAARGSRLLTASRGCHVCHSVPGSAMALVRDPEPAAGSSRWLPTHVQVTVLRASG
::::: ::::: ::::::::::::::: :
gi|119 MALVRGAEPAAGPSRWLPTHVQVTVLRARG
10 20 30
70 80 90 100 110 120
mKIAA0 LRGKSSGAGSTSDAYTVIQVGREKYSTSVVEKTQGCPEWCEECSFELPPGALDGLLRAQE
::::::::::::::::::::::::::::::::: ::::: ::::::::::::::::::::
gi|119 LRGKSSGAGSTSDAYTVIQVGREKYSTSVVEKTPGCPEWREECSFELPPGALDGLLRAQE
40 50 60 70 80 90
130 140 150 160 170 180
mKIAA0 ADAGPAPWASGPNAACELVLTTMHRSLIGVDKFLGRATVALDEVFRAGRAQHTQWYRLHS
:::::::::.: :::.::::::::::::::::::.::::::::: ::::::::::.:::
gi|119 ADAGPAPWAAGSAAACQLVLTTMHRSLIGVDKFLGQATVALDEVFGAGRAQHTQWYKLHS
100 110 120 130 140 150
190 200 210 220 230 240
mKIAA0 KPGKKEKERGEIQVTIQFTRNNLSASMFDLSMKDKPRSPFSKLKDRVKGKKKYDLESASA
: :::::::::::::::::::::::::::::.::::::::::.::..:::::.:::::::
gi|119 KAGKKEKERGEIQVTIQFTRNNLSASMFDLSVKDKPRSPFSKIKDKMKGKKKFDLESASA
160 170 180 190 200 210
250 260 270 280 290 300
mKIAA0 ILPSSALEDPELGSLGKMGKAKGFFLRNKLRKSSLTQSNTSLGSDSTLSSTSGSLVYQGP
::::::::::::::::::::::::::::::::::::::::::::::::::.::::.::::
gi|119 ILPSSALEDPELGSLGKMGKAKGFFLRNKLRKSSLTQSNTSLGSDSTLSSASGSLAYQGP
220 230 240 250 260 270
310 320 330 340 350 360
mKIAA0 GAELLTRSPSHSSWLSTEGGRDSIQSPKLLTHKRTYSDEASQLRAAPPRALLELQGHLDG
::::::::::.:::::.:::::: ::::::::::::::::::.:::::::::.:::::::
gi|119 GAELLTRSPSRSSWLSSEGGRDSAQSPKLLTHKRTYSDEASQMRAAPPRALLDLQGHLDG
280 290 300 310 320 330
370 380 390 400 410 420
mKIAA0 ASRSSLCVNGSHVYNEEPQPPLRHRSSISGPFPPSSSLHSVPPRSSEEGSRSSDDSWGRG
::::::::::::.::::: : :::::::::::::::::. : :::: ::.::::.::
gi|119 ASRSSLCVNGSHIYNEEPPAPPRHRSSISGPFPPSSSLHAGSSRPSEEGPRSADDSWARG
340 350 360 370 380 390
430 440 450 460 470
mKIAA0 SHGTSSSEAVPGQEELSKQAK----GASCSGEEEGARLPEGKPVQVATPMVASSEAVA--
:. :::::::::::::.: . :: :::::::: ::.::::.:::::::::..
gi|119 SRRPSSSEAVPGQEELSSQPRVLAVGARRSGEEEGARPSEGRPVQVTTPMVASSEAAVEK
400 410 420 430 440 450
480 490 500 510 520 530
mKIAA0 --AEKD-RKPRMGLFHHHHHQGLSRSEQGRRGSVGEKGSPSLGASPHHSSTGEEKAKSSW
:.:: :::::::::::: :::::::.:::::.::::::.:::::::::.:::::::::
gi|119 EGARKDERKPRMGLFHHHH-QGLSRSEMGRRGSLGEKGSPTLGASPHHSSSGEEKAKSSW
460 470 480 490 500
540 550 560 570 580 590
mKIAA0 FGLRESKEPTQKPSLDVSPQVESDPAAPHPCSPQALAP----PPAPAAAPMLSTNLFAVT
:::::.:::.:::: ::: .: . :: : . ::: :
gi|119 FGLREAKEPSQKPS-------------PHPVKPLSTAPVEGSPDRKQSRSSLSTALSSGL
510 520 530 540 550
600 610 620 630 640 650
mKIAA0 SPAAATAAAATIVLEATPSGFLGVTNPFLNSLQSNPFFEDLKADIALNSPSPAPSLPSAS
gi|119 EKLKTVTSGSIQPVAPAPQVGQTADAKRLKDSGVLDQSAKYYHLTHDELIGLLLQREREL
560 570 580 590 600 610
>>gi|109103540|ref|XP_001103469.1| PREDICTED: similar to (966 aa)
initn: 3204 init1: 2382 opt: 2911 Z-score: 2222.1 bits: 423.1 E(): 4.6e-115
Smith-Waterman score: 3002; 79.866% identity (88.087% similar) in 596 aa overlap (1-574:270-847)
10 20
mKIAA0 QPAAAAVGALQAARGSRLLTA-SRGCHVCH
.:. : :. .:: ::.::: :: .:::
gi|109 AGRGRGRGADVAARPPARGPVGRGGGGRSARPSPA--GSCGGAR-SRFLTAFCRG-RVCH
240 250 260 270 280 290
30 40 50 60 70
mKIAA0 SVPGSA------------MALVRDPEPAAGSSRWLPTHVQVTVLRASGLRGKSSGAGSTS
.::::: ::::: ::::: ::::::::::::::: :::::::::::::
gi|109 QVPGSAPARPDFARRFPAMALVRGAEPAAGPSRWLPTHVQVTVLRARGLRGKSSGAGSTS
300 310 320 330 340 350
80 90 100 110 120 130
mKIAA0 DAYTVIQVGREKYSTSVVEKTQGCPEWCEECSFELPPGALDGLLRAQEADAGPAPWASGP
:::::::::::::::::::::.::::: :::::::::::::::::::::::::::::..
gi|109 DAYTVIQVGREKYSTSVVEKTHGCPEWREECSFELPPGALDGLLRAQEADAGPAPWAASS
360 370 380 390 400 410
140 150 160 170 180 190
mKIAA0 NAACELVLTTMHRSLIGVDKFLGRATVALDEVFRAGRAQHTQWYRLHSKPGKKEKERGEI
::::::::::::::::::::::.::::::::: ::::::::::.:::::::::::::::
gi|109 AAACELVLTTMHRSLIGVDKFLGQATVALDEVFGAGRAQHTQWYKLHSKPGKKEKERGEI
420 430 440 450 460 470
200 210 220 230 240 250
mKIAA0 QVTIQFTRNNLSASMFDLSMKDKPRSPFSKLKDRVKGKKKYDLESASAILPSSALEDPEL
.:::::::::::::::::::::::::::::.::..:::::::::::::::::::.:::.:
gi|109 EVTIQFTRNNLSASMFDLSMKDKPRSPFSKIKDKMKGKKKYDLESASAILPSSAIEDPDL
480 490 500 510 520 530
260 270 280 290 300 310
mKIAA0 GSLGKMGKAKGFFLRNKLRKSSLTQSNTSLGSDSTLSSTSGSLVYQGPGAELLTRSPSHS
::::::::::::::::::::::::::::::::::::::.::::.::::::::::::::.:
gi|109 GSLGKMGKAKGFFLRNKLRKSSLTQSNTSLGSDSTLSSASGSLAYQGPGAELLTRSPSRS
540 550 560 570 580 590
320 330 340 350 360 370
mKIAA0 SWLSTEGGRDSIQSPKLLTHKRTYSDEASQLRAAPPRALLELQGHLDGASRSSLCVNGSH
::::::::::: :::::.::::::::::::.:.:::::::.::::::.::::::::::::
gi|109 SWLSTEGGRDSAQSPKLFTHKRTYSDEASQMRVAPPRALLDLQGHLDAASRSSLCVNGSH
600 610 620 630 640 650
380 390 400 410 420 430
mKIAA0 VYNEEPQPPLRHRSSISGPFPPSSSLHSVPPRSSEEGSRSSDDSWGRGSHGTSSSEAVPG
.:::::: :.:::::::: .: :.::..: : :::: ::.:::: :::...:::::: :
gi|109 IYNEEPQGPVRHRSSISGSLPSSGSLQAVSSRLSEEGPRSTDDSWPRGSRSNSSSEAVLG
660 670 680 690 700 710
440 450 460 470 480
mKIAA0 QEELSKQAK----GASCSGEEEGARLPEGKPVQVATPMVASSEAVAAEK-----DRKPRM
::: : ::: ::: :::::::::::::::::::.:::::::: .. .:::::
gi|109 QEEPSAQAKVLAPGASHPGEEEGARLPEGKPVQVATPIVASSEAVAEKEGARKEERKPRM
720 730 740 750 760 770
490 500 510 520 530 540
mKIAA0 GLFHHHHHQGLSRSEQGRRGSVGEKGSPSLGASPHHSSTGEEKAKSSWFGLRESKEPTQK
::::::: ::::::: :::.:.::::.:.:::::::::.::::::::::::::.:.::::
gi|109 GLFHHHH-QGLSRSELGRRSSLGEKGGPTLGASPHHSSSGEEKAKSSWFGLREAKDPTQK
780 790 800 810 820 830
550 560 570 580 590 600
mKIAA0 PSLDVSPQVESDPAAPHPCSPQALAPPPAPAAAPMLSTNLFAVTSPAAATAAAATIVLEA
:: ::: .: . ::
gi|109 PS-------------PHPVKPLSAAPVEGSPDRKQSRSSLSIALSSGLEKLKTVTSGSIQ
840 850 860 870 880
>>gi|34223002|sp|Q9BXF6.1|RFIP5_HUMAN RecName: Full=Rab1 (653 aa)
initn: 3198 init1: 2376 opt: 2900 Z-score: 2215.8 bits: 421.3 E(): 1e-114
Smith-Waterman score: 2944; 82.847% identity (90.876% similar) in 548 aa overlap (36-574:1-534)
10 20 30 40 50 60
mKIAA0 AVGALQAARGSRLLTASRGCHVCHSVPGSAMALVRDPEPAAGSSRWLPTHVQVTVLRASG
::::: ::::: ::::::::::::::: :
gi|342 MALVRGAEPAAGPSRWLPTHVQVTVLRARG
10 20 30
70 80 90 100 110 120
mKIAA0 LRGKSSGAGSTSDAYTVIQVGREKYSTSVVEKTQGCPEWCEECSFELPPGALDGLLRAQE
:::::::::::::::::::::::::::::::::.::::: ::::::::::::::::::::
gi|342 LRGKSSGAGSTSDAYTVIQVGREKYSTSVVEKTHGCPEWREECSFELPPGALDGLLRAQE
40 50 60 70 80 90
130 140 150 160 170 180
mKIAA0 ADAGPAPWASGPNAACELVLTTMHRSLIGVDKFLGRATVALDEVFRAGRAQHTQWYRLHS
:::::::::.. ::::::::::::::::::::::.::::::::: ::::::::::.:::
gi|342 ADAGPAPWAASSAAACELVLTTMHRSLIGVDKFLGQATVALDEVFGAGRAQHTQWYKLHS
100 110 120 130 140 150
190 200 210 220 230 240
mKIAA0 KPGKKEKERGEIQVTIQFTRNNLSASMFDLSMKDKPRSPFSKLKDRVKGKKKYDLESASA
::::::::::::.:::::::::::::::::::::::::::::..:..:::::::::::::
gi|342 KPGKKEKERGEIEVTIQFTRNNLSASMFDLSMKDKPRSPFSKIRDKMKGKKKYDLESASA
160 170 180 190 200 210
250 260 270 280 290 300
mKIAA0 ILPSSALEDPELGSLGKMGKAKGFFLRNKLRKSSLTQSNTSLGSDSTLSSTSGSLVYQGP
::::::.:::.:::::::::::::::::::::::::::::::::::::::.::::.::::
gi|342 ILPSSAIEDPDLGSLGKMGKAKGFFLRNKLRKSSLTQSNTSLGSDSTLSSASGSLAYQGP
220 230 240 250 260 270
310 320 330 340 350 360
mKIAA0 GAELLTRSPSHSSWLSTEGGRDSIQSPKLLTHKRTYSDEASQLRAAPPRALLELQGHLDG
::::::::::.:::::::::::: :::::.::::::::::.:.:.:::::::.::::::.
gi|342 GAELLTRSPSRSSWLSTEGGRDSAQSPKLFTHKRTYSDEANQMRVAPPRALLDLQGHLDA
280 290 300 310 320 330
370 380 390 400 410 420
mKIAA0 ASRSSLCVNGSHVYNEEPQPPLRHRSSISGPFPPSSSLHSVPPRSSEEGSRSSDDSWGRG
::::::::::::.:::::: :.:::::::: .: :.::..: : :::: ::.::.: ::
gi|342 ASRSSLCVNGSHIYNEEPQGPVRHRSSISGSLPSSGSLQAVSSRFSEEGPRSTDDTWPRG
340 350 360 370 380 390
430 440 450 460 470 480
mKIAA0 SHGTSSSEAVPGQEELSKQAK----GASCSGEEEGARLPEGKPVQVATPMVASSEAVAAE
:...:::::: :::::: ::: ::: :::::::::::::::::::.:::::::: .
gi|342 SRSNSSSEAVLGQEELSAQAKVLAPGASHPGEEEGARLPEGKPVQVATPIVASSEAVAEK
400 410 420 430 440 450
490 500 510 520 530
mKIAA0 K-----DRKPRMGLFHHHHHQGLSRSEQGRRGSVGEKGSPSLGASPHHSSTGEEKAKSSW
. .:::::::::::: ::::::: :::.:.::::.: :::::::::.:::::::::
gi|342 EGARKEERKPRMGLFHHHH-QGLSRSELGRRSSLGEKGGPILGASPHHSSSGEEKAKSSW
460 470 480 490 500
540 550 560 570 580 590
mKIAA0 FGLRESKEPTQKPSLDVSPQVESDPAAPHPCSPQALAPPPAPAAAPMLSTNLFAVTSPAA
:::::.:.:::::: ::: .: . ::
gi|342 FGLREAKDPTQKPS-------------PHPVKPLSAAPVEGSPDRKQSRSSLSIALSSGL
510 520 530 540 550
600 610 620 630 640 650
mKIAA0 ATAAAATIVLEATPSGFLGVTNPFLNSLQSNPFFEDLKADIALNSPSPAPSLPSASRASL
gi|342 EKLKTVTSGSIQPVTQAPQAGQMVDTKRLKDSAVLDQSAKYYHLTHDELISLLLQREREL
560 570 580 590 600 610
>>gi|62630155|gb|AAX88900.1| unknown [Homo sapiens] (522 aa)
initn: 2886 init1: 2376 opt: 2880 Z-score: 2201.8 bits: 418.4 E(): 6.2e-114
Smith-Waterman score: 2924; 85.468% identity (93.499% similar) in 523 aa overlap (36-549:1-522)
10 20 30 40 50 60
mKIAA0 AVGALQAARGSRLLTASRGCHVCHSVPGSAMALVRDPEPAAGSSRWLPTHVQVTVLRASG
::::: ::::: ::::::::::::::: :
gi|626 MALVRGAEPAAGPSRWLPTHVQVTVLRARG
10 20 30
70 80 90 100 110 120
mKIAA0 LRGKSSGAGSTSDAYTVIQVGREKYSTSVVEKTQGCPEWCEECSFELPPGALDGLLRAQE
:::::::::::::::::::::::::::::::::.::::: ::::::::::::::::::::
gi|626 LRGKSSGAGSTSDAYTVIQVGREKYSTSVVEKTHGCPEWREECSFELPPGALDGLLRAQE
40 50 60 70 80 90
130 140 150 160 170 180
mKIAA0 ADAGPAPWASGPNAACELVLTTMHRSLIGVDKFLGRATVALDEVFRAGRAQHTQWYRLHS
:::::::::.. ::::::::::::::::::::::.::::::::: ::::::::::.:::
gi|626 ADAGPAPWAASSAAACELVLTTMHRSLIGVDKFLGQATVALDEVFGAGRAQHTQWYKLHS
100 110 120 130 140 150
190 200 210 220 230 240
mKIAA0 KPGKKEKERGEIQVTIQFTRNNLSASMFDLSMKDKPRSPFSKLKDRVKGKKKYDLESASA
::::::::::::.:::::::::::::::::::::::::::::..:..:::::::::::::
gi|626 KPGKKEKERGEIEVTIQFTRNNLSASMFDLSMKDKPRSPFSKIRDKMKGKKKYDLESASA
160 170 180 190 200 210
250 260 270 280 290 300
mKIAA0 ILPSSALEDPELGSLGKMGKAKGFFLRNKLRKSSLTQSNTSLGSDSTLSSTSGSLVYQGP
::::::.:::.:::::::::::::::::::::::::::::::::::::::.::::.::::
gi|626 ILPSSAIEDPDLGSLGKMGKAKGFFLRNKLRKSSLTQSNTSLGSDSTLSSASGSLAYQGP
220 230 240 250 260 270
310 320 330 340 350 360
mKIAA0 GAELLTRSPSHSSWLSTEGGRDSIQSPKLLTHKRTYSDEASQLRAAPPRALLELQGHLDG
::::::::::.:::::::::::: :::::.::::::::::.:.:.:::::::.::::::.
gi|626 GAELLTRSPSRSSWLSTEGGRDSAQSPKLFTHKRTYSDEANQMRVAPPRALLDLQGHLDA
280 290 300 310 320 330
370 380 390 400 410 420
mKIAA0 ASRSSLCVNGSHVYNEEPQPPLRHRSSISGPFPPSSSLHSVPPRSSEEGSRSSDDSWGRG
::::::::::::.:::::: :.:::::::: .: :.::..: : :::: ::.::.: ::
gi|626 ASRSSLCVNGSHIYNEEPQGPVRHRSSISGSLPSSGSLQAVSSRFSEEGPRSTDDTWPRG
340 350 360 370 380 390
430 440 450 460 470 480
mKIAA0 SHGTSSSEAVPGQEELSKQAK----GASCSGEEEGARLPEGKPVQVATPMVASSEAVAAE
:...:::::: :::::: ::: ::: :::::::::::::::::::.:::::::: .
gi|626 SRSNSSSEAVLGQEELSAQAKVLAPGASHPGEEEGARLPEGKPVQVATPIVASSEAVAEK
400 410 420 430 440 450
490 500 510 520 530
mKIAA0 K-----DRKPRMGLFHHHHHQGLSRSEQGRRGSVGEKGSPSLGASPHHSSTGEEKAKSSW
. .:::::::::::: ::::::: :::.:.::::.: :::::::::.:::::::::
gi|626 EGARKEERKPRMGLFHHHH-QGLSRSELGRRSSLGEKGGPILGASPHHSSSGEEKAKSSW
460 470 480 490 500
540 550 560 570 580 590
mKIAA0 FGLRESKEPTQKPSLDVSPQVESDPAAPHPCSPQALAPPPAPAAAPMLSTNLFAVTSPAA
:::::.:.:::::
gi|626 FGLREAKDPTQKP
510 520
>>gi|194220613|ref|XP_001917193.1| PREDICTED: RAB11 fami (651 aa)
initn: 3136 init1: 2289 opt: 2876 Z-score: 2197.6 bits: 418.0 E(): 1.1e-113
Smith-Waterman score: 2876; 79.038% identity (87.973% similar) in 582 aa overlap (36-605:1-574)
10 20 30 40 50 60
mKIAA0 AVGALQAARGSRLLTASRGCHVCHSVPGSAMALVRDPEPAAGSSRWLPTHVQVTVLRASG
:...: : :..: :::::::::: :::: :
gi|194 MGVARGP-PGGGCSRWLPTHVQVIVLRARG
10 20
70 80 90 100 110 120
mKIAA0 LRGKSSGAGSTSDAYTVIQVGREKYSTSVVEKTQGCPEWCEECSFELPPGALDGLLRAQE
::::::::::::::::::::::::::::::::: ::::: ::::::::::::::::::.:
gi|194 LRGKSSGAGSTSDAYTVIQVGREKYSTSVVEKTPGCPEWREECSFELPPGALDGLLRAHE
30 40 50 60 70 80
130 140 150 160 170 180
mKIAA0 ADAGPAPWASGPNAACELVLTTMHRSLIGVDKFLGRATVALDEVFRAGRAQHTQWYRLHS
::: :::::. ::::::::::::::: :::.: .::::: ::: : :. :::::.:::
gi|194 ADAIPAPWAALSAAACELVLTTMHRSLIFVDKILIQATVALYEVFVAHRGVHTQWYKLHS
90 100 110 120 130 140
190 200 210 220 230 240
mKIAA0 KPGKKEKERGEIQVTIQFTRNNLSASMFDLSMKDKPRSPFSKLKDRVKGKKKYDLESASA
: ::::::::::::::::::::::::::::::::::::::::.::..:::::.:::::::
gi|194 KSGKKEKERGEIQVTIQFTRNNLSASMFDLSMKDKPRSPFSKIKDKMKGKKKFDLESASA
150 160 170 180 190 200
250 260 270 280 290 300
mKIAA0 ILPSSALEDPELGSLGKMGKAKGFFLRNKLRKSSLTQSNTSLGSDSTLSSTSGSLVYQGP
::::::.:::::::::::::::::::::::::::::::::::::::::::.::::.::::
gi|194 ILPSSAVEDPELGSLGKMGKAKGFFLRNKLRKSSLTQSNTSLGSDSTLSSASGSLAYQGP
210 220 230 240 250 260
310 320 330 340 350 360
mKIAA0 GAELLTRSPSHSSWLSTEGGRDSIQSPKLLTHKRTYSDEASQLRAAPPRALLELQGHLDG
::::::::::.:::::::::::: ::::::::::::::::.:.:::::::::.::::.:
gi|194 GAELLTRSPSRSSWLSTEGGRDSTQSPKLLTHKRTYSDEANQMRAAPPRALLDLQGHVDT
270 280 290 300 310 320
370 380 390 400 410 420
mKIAA0 ASRSSLCVNGSHVYNEEPQPPLRHRSSISGPFPPSSSLHSVPPRSSEEGSRSSDDSWGRG
::::::::::::.:::::: ::::::::::::::::::::: : :::. ::.::::::.
gi|194 ASRSSLCVNGSHIYNEEPQGPLRHRSSISGPFPPSSSLHSVSSRPSEEAPRSADDSWGRS
330 340 350 360 370 380
430 440 450 460 470 480
mKIAA0 SHGTSSSEAVPGQEELSKQAK----GASCSGEEEGARLPEGKPVQVATPMVASSEAVAAE
...:::::..:::::::.::: ::: :::::::: ::::::::::::::: .: :
gi|194 NRSTSSSEVAPGQEELSSQAKVLAIGASHSGEEEGARPPEGKPVQVATPMVASEAVVEKE
390 400 410 420 430 440
490 500 510 520 530
mKIAA0 ----KDRKPRMGLFHHHHHQGLSRSEQGRRGSVGEKGSPSLGASPHHSSTGEEKAKSSWF
..:::::::::::: :::::::.:::::.::::.:.::::::::::::::::::::
gi|194 GARKEERKPRMGLFHHHH-QGLSRSEMGRRGSLGEKGGPTLGASPHHSSTGEEKAKSSWF
450 460 470 480 490 500
540 550 560 570 580 590
mKIAA0 GLRESKEPTQKPSLDVSPQ-VESDPAAPHPCSPQALAPPPAPAAAPMLSTNLF---AVTS
:::: :::::::: :. :. ::: ::. : . ..: ::..: .:::
gi|194 GLREPKEPTQKPS----PHPVKPLSAAPVEGSPDRKQPRSSLSTA--LSSGLEKLKTVTS
510 520 530 540 550 560
600 610 620 630 640 650
mKIAA0 PAAATAAAATIVLEATPSGFLGVTNPFLNSLQSNPFFEDLKADIALNSPSPAPSLPSASR
.. .: : :
gi|194 GSVQPVAPAPQVGQTVDTKRLKDSGVLDQSAKYYHLTHDELIGLLLQRERELSQRDEHVQ
570 580 590 600 610 620
1353 residues in 1 query sequences
2727779818 residues in 7921681 library sequences
Tcomplib [34.26] (2 proc)
start: Mon Mar 16 19:09:42 2009 done: Mon Mar 16 19:20:07 2009
Total Scan time: 1344.320 Total Display time: 0.520
Function used was FASTA [version 34.26.5 April 26, 2007]