FASTA searches a protein or DNA sequence data bank version 3.4t11 Apr 17, 2002 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 ../query/mKIAA4135.ptfa, 723 aa vs ./tmplib.26680 library 1768294 residues in 2168 sequences Expectation_n fit: rho(ln(x))= 15.6864+/-0.0104; mu= -36.6856+/- 0.687 mean_var=678.9632+/-165.808, 0's: 0 Z-trim: 12 B-trim: 0 in 0/36 Lambda= 0.0492 FASTA (3.45 Mar 2002) function [optimized, BL50 matrix (15:-5)] ktup: 2 join: 38, opt: 26, open/ext: -10/-2, width: 16 The best scores are: opt bits E(2168) mKIAA0733 ( 685 res) mpm06380 ( 685) 612 59 2.6e-09 mKIAA0458 ( 882 res) mbg00904 ( 882) 344 40 0.0017 >>mKIAA0733 ( 685 res) mpm06380 (685 aa) initn: 1161 init1: 406 opt: 612 Z-score: 259.6 bits: 58.5 E(): 2.6e-09 Smith-Waterman score: 1360; 38.825% identity (50.000% ungapped) in 783 aa overlap (16-722:1-684) 10 20 30 40 50 60 mKIAA4 LTNIDSGMAQNSPQLDIQVLHDLRQRFPEIPEGVVSQCMLQNNNNLEACCRALSQESSKY :.::::::::.:::.:: :::.:::::::::.::: .:::::..: mKIAA0 DFQVLHDLRQKFPEVPEVVVSRCMLQNNNNLDACCAVLSQESTRY 10 20 30 40 70 80 90 100 110 mKIAA4 LYME---YHSPEDNRMN-RNRLLHINLGIHSPSSYHPG-DGAHLNGGRTLVHSSSDGHID :: : : :.. . ::.. .:: ..: . :: : .:...::.:::.:: :::.. mKIAA0 LYGEGDLNFSDESGISGLRNHMTSLNLDLQSQNVYHHGREGSRVNGSRTLTHSVSDGQLH 50 60 70 80 90 100 120 130 140 150 160 170 mKIAA4 PQHTAGKQLICLVQEPHSAPAVVAATPNYNPFFMNEQNRSAATPPSQPPQQPSSMQTGMN .. .. . :::..::: : ..: : : :: . :. . :.. mKIAA0 GGQSNNELFQ---QEPQTAPAQVPQ--GFNVFGM----------PSTSGASNSTPHLGFH 110 120 130 140 150 180 190 200 210 220 230 mKIAA4 PSAMQGPSPPPPPPSYMHIPRYSTNPITVTVSQNLPSGQTVPRALQILPQIPSNLYGSP- .. .: : .. ::. ::: ::.. :. .:...: .:.: .: . .:: mKIAA0 LGS-KGTSNLS-----QQTPRF--NPIMVTLAPNIQTGRSTPTSLHI-HGVPPPVLNSPQ 160 170 180 190 200 240 250 260 270 280 290 mKIAA4 -GSIFIRQ--TSQSSSGRQTPQNAPWQSSPQGPVPHYSQRPLPVYPHQQNYQPSQYSPKQ .::.:: :. :...::: :.. : : ... :. : :: ::::: : mKIAA0 GNSIYIRPYITTPSGTARQTQQHSGW-------VSQFN----PMNP-QQAYQPSQ--PG- 210 220 230 240 300 310 320 330 340 350 mKIAA4 QQIPQSVYHSPPPSQCPSPFSSPQHQVQPPQLGHPSSHVFMPPSPSTTPPHLYQQGPPSY : ..: :.. : : .: : :: : :: .:::.:: : ::: ::. mKIAA0 ---PWTTY----PASNPLPHTSTQ---QPNQQGHQTSHVYMPISSPTTPQ------PPTI 250 260 270 280 290 360 370 380 390 400 mKIAA4 QKPGS-HSVAYLPYTASSLPKGSMK-KIEITVEPSQRPGTAITRSPSP--------ISNQ .. :: .: :. :. ... : : .::: .:: :: ... :: .: ...: mKIAA0 HSSGSSQSSAHSQYNIQNISTGPRKNQIEIKLEPPQRNSSSKLRSSGPRTASTSSLVNSQ 300 310 320 330 340 350 410 420 430 440 mKIAA4 PSPRNQHSLYTATTPPSSSP--SRGISSQPKPPFSVNPV----YITYTQPT-------GP ::: ..: :..::... :: :::: .:.: . .::: :: mKIAA0 TLNRNQPTVYIAASPPNTDEMISR---SQPKVYISANATAGDEQGMRNQPTLFISTNSGP 360 370 380 390 400 450 460 470 mKIAA4 SCA-----------PS-----P------------SPRVI---PNPTTVFKITV------- : : :. : ::::. :: .::::: mKIAA0 SAASRNMSGQVSMGPAFIHHHPPKSRVLGGNSATSPRVVVTQPNTKYTFKITVSPNKPPA 410 420 430 440 450 460 480 490 500 510 520 mKIAA4 ---GRAT-TENLLNLVDQEERSAAPEPIQPISVIPGSGGEKGNHKYQRSSSSGSDDYAYT : .. : .: ::... .. . : :: .. . .. .. :. : :::: ::: mKIAA0 VSPGVVSPTFELTNLLNHPDHYVETENIQHLTDPALAHVDRISEA--RKLSMGSDDAAYT 470 480 490 500 510 520 530 540 550 560 570 580 mKIAA4 QALLLHQRARMERLAKQLKLEKEELERLKAEVNSMEHDLMQRRLRRVSCTTAIPTPEEMT ::::.::.:::::: ..:...:..:..::.::: ::..: .:::.: . . ::. ::: mKIAA0 QALLVHQKARMERLQRELEMQKKKLDKLKSEVNEMENNLTRRRLKRSNSISQIPSLEEMQ 530 540 550 560 570 580 590 600 610 620 630 640 mKIAA4 RLRSTNRQLQINVDCTLKEVDLLQSRG-NFDPKAINNFYDHIE-PGPVVPPKPSKKDSSD .::: ::::::..:: ::.::.:.:: .:.:.::.::::.: ::: ::::. . : mKIAA0 QLRSCNRQLQIDIDCLTKEIDLFQARGPHFNPSAIHNFYDNIGFVGPV-PPKPKDQRS-- 590 600 610 620 630 640 650 660 670 680 690 700 mKIAA4 SCAIERKARRISVTSKAPVDIHDAQAAAADEHLSICKQSARTQPRDEDYEGAPWNCDSCT : ::: .:: :: ::: ::: .:: mKIAA0 -------------TIKAP-KTQDA----------------------EDEEGAQWNCTACT 650 660 710 720 mKIAA4 FLNHPALNRCEQCEMPRYT ::::::: :::::::::. mKIAA0 FLNHPALIRCEQCEMPRHF 670 680 >>mKIAA0458 ( 882 res) mbg00904 (882 aa) initn: 135 init1: 94 opt: 344 Z-score: 155.3 bits: 39.6 E(): 0.0017 Smith-Waterman score: 395; 24.575% identity (29.613% ungapped) in 529 aa overlap (85-568:21-504) 60 70 80 90 100 110 mKIAA4 QESSKYLYMEYHSPEDNRMNRNRLLHINLGIHSPSSYHPGDGAHLNGGRT-LVHSSSDGH ... .: : : . : . . . : .:.. mKIAA0 EISRPNSPSEGEGESSDSRSVNDEGSSDPKDIDQDNRSTSPSIPSPQDNE 10 20 30 40 50 120 130 140 150 160 mKIAA4 IDPQHTAGKQLICL----VQEPHSAPAVVAATPNYNPFFMNEQNRSAAT--PPSQPP--- : . .: .:.. .: : .: .. ...: .: . .. .:: ::. : mKIAA0 SDSDSSAQQQMLQAQPPALQAPSGAASAPSTAPPGTPQLPTQGPTPSATAVPPQGSPATS 60 70 80 90 100 110 170 180 190 200 210 mKIAA4 QQPSSMQTGMNPSA----MQGPSPPPPPPSYMHIP-RYSTNPITVTVSQNLPS------G : :.. :. . :.: .:.:. :: : : . : : . . .: :. : mKIAA0 QPPNQTQSTVAPAAHTHIQQAPTLHPPRLPSPHPPLQPMTAPPSQSSAQPHPQPSLHGQG 120 130 140 150 160 170 220 230 240 250 260 mKIAA4 QTVPRALQILPQI----PSNLYGSPGSIFIRQTSQSSSGRQTPQNAPWQSSPQGPVPHYS :..:: : . : . .: : :: :.:. .: :: . :: : mKIAA0 PPGPHSLQTGPLLQHPGPPQPFGLP--------SQPSQGQ-----GPLGPSPAAAHPH-S 180 190 200 210 270 280 290 300 310 320 mKIAA4 QRPLPVYPHQQNYQPSQYSPKQQQIPQS---VYHSPPPSQCPSP-FSSPQHQVQPPQLGH ::. :. ::.: :..: .: . . : :: : : . .:: . .::.:. mKIAA0 TIQLPA--SQSALQPQQ-PPREQPLPPAPLAMPHIKPPPTTPIPQLPAPQAHKHPPHLSG 220 230 240 250 260 270 330 340 350 360 370 mKIAA4 PSSHVF---MPPSPSTTP-PHLYQQGPPSYQKPGSHSVAY---LPYTASSLPKGSMKKIE :: . .:: :. : : . ::: . : . . :: .. . : : .. mKIAA0 PSPFSLNANLPPPPALKPLSSLSTHHPPSAHPPPLQLMPQSQPLP-SSPAQPPGLTQSQS 280 290 300 310 320 330 380 390 400 410 420 430 mKIAA4 ITVEPSQRPGTAITRSPS--PISNQP-SPRNQHSLYTATTPPSSSPSRGISSQPKPPFSV . ...: :.. . :: :. ..: : . . . ::.:.: : ::. .:: :. mKIAA0 LPPPAASHPTTGLHQVPSQSPFPQHPFVPGGPPPITPPSCPPTSTPPAGPSSSSQPPCSA 340 350 360 370 380 390 440 450 460 470 480 mKIAA4 NPVYITYTQPTGPSCAPSPSPRVIPNPTTVFKITVGRATTENLLNLVDQEE------RSA : . : .::: : :. .. :. :. ... : :: mKIAA0 A-VSSGGSVPGAPSC-PLPAVQI----------------KEEALDEAEEPESPPPPPRSP 400 410 420 430 490 500 510 520 530 540 mKIAA4 APEPIQPISVIPGSGGEKGNHKYQRSSSSGSDDYAYTQALLLHQRARMERLAKQLKLEKE .::: .:. . . . .. . . : .. : :. .. . .:::. ..: mKIAA0 SPEP----TVVDTPSHASQSARFYKHLDRGYNSCARTDLYFMPLAGS--KLAKK---REE 440 450 460 470 480 550 560 570 580 590 600 mKIAA4 ELERLKAEVNSMEHDLMQRRLRRVSCTTAIPTPEEMTRLRSTNRQLQINVDCTLKEVDLL .:. : :... .. .:. mKIAA0 AIEKAKREAEQKAREEREREKEKEKEREREREREREAERAAKASSSAHEGRLSDPQLSGP 490 500 510 520 530 540 723 residues in 1 query sequences 1768294 residues in 2168 library sequences Scomplib [34t11] start: Mon Mar 27 11:02:56 2006 done: Mon Mar 27 11:02:57 2006 Scan time: 0.880 Display time: 0.080 Function used was FASTA [version 3.4t11 Apr 17, 2002]