FASTA searches a protein or DNA sequence data bank
 version 3.4t11 Apr 17, 2002
Please cite:
 W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

 ../query/mKIAA4013.ptfa, 308 aa
 vs ./tmplib.26680 library

1768709 residues in  2168 sequences
  Expectation_n fit: rho(ln(x))= 4.6435+/-0.00392; mu= 13.5863+/- 0.262
 mean_var=76.2265+/-17.804, 0's: 0 Z-trim: 1  B-trim: 0 in 0/36
 Lambda= 0.1469

FASTA (3.45 Mar 2002) function [optimized, BL50 matrix (15:-5)] ktup: 2
 join: 37, opt: 25, open/ext: -10/-2, width:  16
The best scores are:                                       opt bits E(2168)
mKIAA0116  ( 286 res)   mpk02408                   ( 286)  393   92 3.6e-20


>>mKIAA0116  ( 286 res)   mpk02408                        (286 aa)
 initn: 333 init1: 309 opt: 393  Z-score: 454.5  bits: 92.1 E(): 3.6e-20
Smith-Waterman score: 393;  30.943% identity (32.411% ungapped) in 265 aa overlap (50-308:13-271)

      20        30        40        50        60        70         
mKIAA4 GAEGCAGAERAGKMAAGFKTVEPLEYYRRFLKENCRPDGRELGEFRATTVNIGSISTADG
                                     ..:. : :::   ..: . :.   .:...:
mKIAA0                   LSEAEKVYIVHGVQEDLRVDGRGCEDYRCVEVETDVVSNTSG
                                 10        20        30        40  

      80        90       100       110       120       130         
mKIAA4 SALVKLGNTTVICGVKAEFAAPPVDAPDRGYVVPNVDLPPLCSSRFRTGPPGEE-AQVTS
       :: ::::.:  . :::::...: .. :..::.   ::     . .:. :  :.. .   .
mKIAA0 SARVKLGHTDFLVGVKAEMGTPKLEKPNEGYLEFFVDCSANATPEFE-GRGGDDLGTEIA
             50        60        70        80         90       100 

      140       150       160       170       180       190        
mKIAA4 QFIADVVDNSQVIKKEDLCISPGKLAWVLYCDLICLDYDGNILDACTFALLAALKNVQLP
       . .  . .:.. .  ..::::: .  :::: :.. :.  ::..:: ..:. ::: :...:
mKIAA0 NTLYRIFNNKSSVDLRSLCISPREHCWVLYVDVLLLECGGNLFDAISIAVKAALFNTRIP
             110       120       130       140       150       160 

      200        210           220       230       240       250   
mKIAA4 EVTINE-ETALAEVNLKKKSY----LNVRTNPVATSFAVFDDTLLIVDPTGEEEHLSTGT
       .: . : : .  ...:.   :    :.:.. :  ...  .     .:: : .::  : ..
mKIAA0 RVRVLEDEEGAKDIELSDDPYDCIRLSVENVPCIVTLCKIG-CRHVVDATLQEEACSLAS
             170       180       190       200        210       220

           260       270       280       290       300             
mKIAA4 LTVVTDEDGKLCCLHKPGGSGLTGAKLQDCMSRAVTRHKEVSKLLDEVIQSMRHK     
       : : .   : . :..: : ..:   .. . :  .    :.:.:.:   .::. ::     
mKIAA0 LLVSVTSKGVVTCMRKVGKGSLDPESIFEMMESS----KRVGKVLHVSLQSLLHKEESLG
              230       240       250           260       270      

mKIAA0 PKRPRVGFLG
        280      




308 residues in 1 query   sequences
1768709 residues in 2168 library sequences
 Scomplib [34t11]
 start: Mon Mar 27 10:59:14 2006 done: Mon Mar 27 10:59:14 2006
 Scan time:  0.540 Display time:  0.010

Function used was FASTA [version 3.4t11 Apr 17, 2002]